Wall clock time and date at job start Tue Mar 31 2020 20:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 119.99912 * 2 1 4 4 H 1.48504 * 109.47320 * 269.99766 * 3 2 1 5 5 H 1.48501 * 109.47615 * 30.00103 * 3 2 1 6 6 H 1.48510 * 109.46972 * 150.00237 * 3 2 1 7 7 C 1.38807 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00064 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99948 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47172 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46645 * 54.99999 * 11 10 9 13 13 C 1.53002 * 109.47154 * 295.00383 * 11 10 9 14 14 C 1.52996 * 109.47065 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47264 * 59.99917 * 14 13 11 16 16 C 1.53001 * 109.46876 * 299.99762 * 15 14 13 17 17 C 1.52999 * 109.46992 * 60.00448 * 16 15 14 18 18 H 1.08999 * 109.47091 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47341 * 59.99623 * 17 16 15 20 20 C 1.34777 * 119.99665 * 85.27876 * 19 17 16 21 21 O 1.21283 * 119.99990 * 359.71991 * 20 19 17 22 22 C 1.50698 * 119.99538 * 179.72653 * 20 19 17 23 23 C 1.52999 * 109.47004 * 179.97438 * 22 20 19 24 24 C 1.52998 * 109.47303 * 179.97438 * 23 22 20 25 25 C 1.53171 * 109.54738 * 294.82387 * 24 23 22 26 26 C 1.53101 * 109.16178 * 183.23907 * 25 24 23 27 27 O 1.42910 * 109.48774 * 57.47243 * 26 25 24 28 28 C 1.42903 * 114.09527 * 298.89451 * 27 26 25 29 29 C 1.53092 * 109.41756 * 61.15378 * 28 27 26 30 30 H 0.97002 * 120.00089 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99657 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47119 * 60.00448 * 10 9 7 33 33 H 1.09001 * 109.47642 * 299.99894 * 10 9 7 34 34 H 1.08998 * 109.46918 * 59.99149 * 13 11 10 35 35 H 1.09005 * 109.46734 * 299.99840 * 13 11 10 36 36 H 1.09005 * 109.46772 * 299.99640 * 14 13 11 37 37 H 1.08999 * 109.47079 * 179.97438 * 14 13 11 38 38 H 1.08995 * 109.47084 * 180.02562 * 15 14 13 39 39 H 1.08996 * 109.46985 * 59.99762 * 15 14 13 40 40 H 1.08996 * 109.47611 * 300.00258 * 16 15 14 41 41 H 1.09001 * 109.46951 * 179.97438 * 16 15 14 42 42 H 0.97001 * 119.99790 * 264.99588 * 19 17 16 43 43 H 1.09003 * 109.47112 * 299.99065 * 22 20 19 44 44 H 1.08993 * 109.47916 * 59.99687 * 22 20 19 45 45 H 1.09000 * 109.47527 * 299.99994 * 23 22 20 46 46 H 1.09007 * 109.47302 * 59.99534 * 23 22 20 47 47 H 1.08997 * 109.53988 * 55.00323 * 24 23 22 48 48 H 1.08996 * 109.52378 * 303.05862 * 25 24 23 49 49 H 1.08997 * 109.52465 * 63.24391 * 25 24 23 50 50 H 1.09003 * 109.40741 * 297.49476 * 26 25 24 51 51 H 1.08993 * 109.48801 * 177.50295 * 26 25 24 52 52 H 1.09001 * 109.48149 * 301.17141 * 28 27 26 53 53 H 1.09004 * 109.48545 * 181.14384 * 28 27 26 54 54 H 1.09002 * 109.52348 * 182.47804 * 29 28 27 55 55 H 1.09007 * 109.56977 * 62.32883 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2021 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0636 -4.8197 -0.0021 12 1 0.3792 -4.7122 -0.8436 13 6 0.2693 -4.8121 1.3056 14 6 -0.7253 -5.9746 1.3049 15 6 0.0349 -7.2962 1.1777 16 6 0.8292 -7.3039 -0.1299 17 6 1.8239 -6.1414 -0.1292 18 1 2.3901 -6.1471 -1.0606 19 7 2.7438 -6.2864 1.0018 20 6 3.8457 -7.0528 0.8801 21 8 4.0731 -7.6265 -0.1640 22 6 4.7951 -7.1970 2.0415 23 6 5.9533 -8.1138 1.6427 24 6 6.9175 -8.2597 2.8215 25 6 7.5651 -6.9051 3.1247 26 6 8.5872 -7.0776 4.2514 27 8 9.5587 -8.0532 3.8685 28 6 9.0154 -9.3513 3.6197 29 6 8.0122 -9.2705 2.4661 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3880 -0.0005 32 1 2.6852 -3.7149 0.8878 33 1 2.6839 -3.7142 -0.8922 34 1 -0.2726 -3.8706 1.3959 35 1 0.9538 -4.9195 2.1471 36 1 -1.4097 -5.8667 0.4634 37 1 -1.2909 -5.9694 2.2366 38 1 -0.6737 -8.1244 1.1768 39 1 0.7193 -7.4041 2.0192 40 1 0.1449 -7.1960 -0.9714 41 1 1.3712 -8.2453 -0.2203 42 1 2.5618 -5.8275 1.8368 43 1 5.1851 -6.2168 2.3158 44 1 4.2667 -7.6286 2.8915 45 1 5.5631 -9.0939 1.3685 46 1 6.4819 -7.6825 0.7925 47 1 6.3713 -8.6071 3.6984 48 1 8.0682 -6.5340 2.2319 49 1 6.7975 -6.1952 3.4329 50 1 8.0767 -7.4086 5.1559 51 1 9.0831 -6.1258 4.4413 52 1 8.5105 -9.7119 4.5159 53 1 9.8198 -10.0375 3.3545 54 1 7.5641 -10.2508 2.3037 55 1 8.5240 -8.9492 1.5589 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322359450.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:12 Heat of formation + Delta-G solvation = -134.941160 kcal Electronic energy + Delta-G solvation = -30408.562525 eV Core-core repulsion = 26442.893351 eV Total energy + Delta-G solvation = -3965.669173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.41681 -40.36492 -39.31880 -36.50565 -36.29493 -34.63590 -33.71526 -32.35858 -31.87477 -31.24164 -30.57643 -27.21323 -26.60226 -24.68748 -24.47441 -23.68632 -22.95573 -22.04287 -21.41846 -20.88323 -19.99470 -19.25111 -18.17375 -17.03494 -16.91953 -16.90006 -16.64608 -16.54839 -16.18387 -15.77348 -15.51323 -15.37701 -15.22024 -15.09047 -14.88249 -14.68540 -14.60730 -14.04410 -13.90642 -13.40944 -13.27299 -13.17248 -13.04977 -12.93267 -12.91838 -12.79566 -12.71027 -12.57554 -12.23863 -12.13177 -12.11577 -11.92121 -11.85182 -11.72644 -11.41320 -11.24142 -11.18116 -11.14071 -11.03518 -10.85596 -10.77601 -10.40167 -9.93583 -8.99580 -7.95961 -5.24240 1.46429 1.47913 1.56165 1.74262 2.30481 2.54880 3.02408 3.37461 3.58059 3.70992 3.74418 3.79507 3.83422 3.85470 4.06628 4.09125 4.11407 4.24329 4.27919 4.30907 4.42633 4.43583 4.48327 4.50012 4.53953 4.59131 4.63162 4.66420 4.71667 4.78176 4.82301 4.84384 4.91807 4.92429 4.96428 5.01940 5.09014 5.09556 5.18121 5.20279 5.22500 5.27829 5.31082 5.32970 5.37010 5.47065 5.49617 5.51799 5.53760 5.65681 6.26458 6.31832 6.64429 7.33364 7.34802 8.08840 8.33217 9.27299 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009214 B = 0.002655 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.213713 B =10544.165647 C =12938.637546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.740 5.740 10 C 0.163 3.837 11 C -0.088 4.088 12 H 0.072 0.928 13 C -0.104 4.104 14 C -0.114 4.114 15 C -0.107 4.107 16 C -0.121 4.121 17 C 0.162 3.838 18 H 0.061 0.939 19 N -0.710 5.710 20 C 0.508 3.492 21 O -0.588 6.588 22 C -0.136 4.136 23 C -0.089 4.089 24 C -0.084 4.084 25 C -0.154 4.154 26 C 0.056 3.944 27 O -0.410 6.410 28 C 0.057 3.943 29 C -0.151 4.151 30 H 0.252 0.748 31 H 0.376 0.624 32 H 0.027 0.973 33 H 0.000 1.000 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.409 0.591 43 H 0.106 0.894 44 H 0.121 0.879 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.090 0.910 48 H 0.055 0.945 49 H 0.089 0.911 50 H 0.064 0.936 51 H 0.096 0.904 52 H 0.063 0.937 53 H 0.099 0.901 54 H 0.084 0.916 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.466 -22.265 11.120 26.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.383 5.383 10 C 0.036 3.964 11 C -0.108 4.108 12 H 0.091 0.909 13 C -0.141 4.141 14 C -0.152 4.152 15 C -0.144 4.144 16 C -0.160 4.160 17 C 0.056 3.944 18 H 0.079 0.921 19 N -0.363 5.363 20 C 0.296 3.704 21 O -0.469 6.469 22 C -0.176 4.176 23 C -0.127 4.127 24 C -0.102 4.102 25 C -0.192 4.192 26 C -0.020 4.020 27 O -0.330 6.330 28 C -0.019 4.019 29 C -0.189 4.189 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.045 0.955 33 H 0.018 0.982 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.246 0.754 43 H 0.125 0.875 44 H 0.139 0.861 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.074 0.926 49 H 0.107 0.893 50 H 0.082 0.918 51 H 0.114 0.886 52 H 0.081 0.919 53 H 0.117 0.883 54 H 0.103 0.897 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.975 -22.521 10.375 26.728 hybrid contribution -0.383 1.544 -0.311 1.621 sum 9.592 -20.977 10.064 25.166 Atomic orbital electron populations 1.69800 1.06470 1.26065 1.59402 1.25511 0.96388 1.00907 1.03672 0.85186 0.77813 0.79700 0.77336 1.21725 1.21958 1.19440 1.19577 0.91317 0.85492 1.41317 0.91145 1.42535 1.05632 1.00900 1.89263 1.20733 0.93613 0.84982 0.97069 1.21450 0.96874 0.92666 0.99770 0.90923 1.21445 0.97996 0.98680 0.96023 1.21536 0.97455 0.93865 1.02340 1.21438 0.98735 0.97287 0.96938 1.21829 0.97505 0.97220 0.99437 1.20712 0.89990 0.94029 0.89639 0.92096 1.46111 1.23737 1.49684 1.16740 1.21326 0.81546 0.77530 0.89971 1.90669 1.75631 1.48648 1.31915 1.21777 0.95766 1.03521 0.96502 1.21256 0.94705 0.99356 0.97421 1.21193 0.95388 0.95208 0.98402 1.22325 0.99316 0.98016 0.99554 1.22706 0.90516 0.92513 0.96253 1.87905 1.35303 1.20568 1.89194 1.22707 0.97568 0.84382 0.97231 1.22232 0.97084 1.00430 0.99107 0.93966 0.79150 0.95547 0.98191 0.93402 0.91371 0.92296 0.90784 0.90772 0.91372 0.90912 0.92263 0.75352 0.87548 0.86113 0.91892 0.93486 0.89221 0.92593 0.89293 0.91813 0.88573 0.91901 0.88266 0.89710 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.25 -13.68 9.99 84.03 0.84 -12.84 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 9 N -0.74 -37.08 5.33 -343.45 -1.83 -38.91 16 10 C 0.16 6.41 5.42 86.38 0.47 6.88 16 11 C -0.09 -2.69 2.02 -10.79 -0.02 -2.72 16 12 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 13 C -0.10 -2.81 4.90 30.59 0.15 -2.66 16 14 C -0.11 -2.43 5.92 30.59 0.18 -2.25 16 15 C -0.11 -1.96 5.77 30.59 0.18 -1.79 16 16 C -0.12 -2.72 5.61 30.59 0.17 -2.55 16 17 C 0.16 4.31 2.23 44.99 0.10 4.41 16 18 H 0.06 1.95 7.57 -2.39 -0.02 1.93 16 19 N -0.71 -16.18 3.62 -442.54 -1.60 -17.78 16 20 C 0.51 12.27 7.80 87.66 0.68 12.95 16 21 O -0.59 -19.20 15.64 -3.04 -0.05 -19.24 16 22 C -0.14 -2.13 5.46 29.85 0.16 -1.97 16 23 C -0.09 -1.53 3.98 30.59 0.12 -1.41 16 24 C -0.08 -1.09 2.27 -10.68 -0.02 -1.11 16 25 C -0.15 -2.14 5.10 30.69 0.16 -1.99 16 26 C 0.06 0.78 6.84 72.02 0.49 1.27 16 27 O -0.41 -7.43 10.77 -148.98 -1.60 -9.04 16 28 C 0.06 0.75 6.84 72.01 0.49 1.24 16 29 C -0.15 -2.02 5.43 30.68 0.17 -1.86 16 30 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.38 19.86 6.85 -92.71 -0.64 19.23 16 32 H 0.03 1.01 7.61 -2.39 -0.02 0.99 16 33 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.05 1.62 7.18 -2.39 -0.02 1.60 16 35 H 0.07 1.64 6.51 -2.38 -0.02 1.63 16 36 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.16 7.60 -2.39 -0.02 1.14 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.41 7.88 6.67 -92.71 -0.62 7.26 16 43 H 0.11 1.47 6.65 -2.39 -0.02 1.45 16 44 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.17 8.10 -2.39 -0.02 1.16 16 46 H 0.05 1.03 8.10 -2.38 -0.02 1.01 16 47 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.09 1.01 6.74 -2.39 -0.02 1.00 16 50 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 53 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 54 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 55 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -70.63 416.36 1.62 -69.01 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -0.39 Total: 36.27 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 4.78 Total: -10.05 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -3.15 Total: -114.99 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -1.65 Total: -28.28 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -70.63 1.62 -69.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322359450.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.930 kcal (2) G-P(sol) polarization free energy of solvation -70.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds