Wall clock time and date at job start Tue Mar 31 2020 20:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99977 * 2 1 4 4 H 1.48504 * 109.46822 * 269.99800 * 3 2 1 5 5 H 1.48496 * 109.46884 * 29.99120 * 3 2 1 6 6 H 1.48492 * 109.47481 * 149.99729 * 3 2 1 7 7 C 1.38809 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00061 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00457 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47264 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46706 * 55.00301 * 11 10 9 13 13 C 1.52997 * 109.47140 * 295.00218 * 11 10 9 14 14 C 1.53001 * 109.47140 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46974 * 59.99759 * 14 13 11 16 16 C 1.52997 * 109.47383 * 300.00092 * 15 14 13 17 17 C 1.53002 * 109.46939 * 175.00362 * 11 10 9 18 18 H 1.08991 * 109.47341 * 60.00300 * 17 11 10 19 19 N 1.46504 * 109.46897 * 299.99710 * 17 11 10 20 20 C 1.34776 * 119.99735 * 154.99929 * 19 17 11 21 21 O 1.21282 * 119.99940 * 0.02562 * 20 19 17 22 22 C 1.50698 * 120.00035 * 179.97438 * 20 19 17 23 23 C 1.53006 * 109.47184 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47127 * 180.02562 * 23 22 20 25 25 C 1.53174 * 109.54519 * 294.82467 * 24 23 22 26 26 C 1.53106 * 109.15947 * 183.24099 * 25 24 23 27 27 O 1.42900 * 109.48492 * 57.47496 * 26 25 24 28 28 C 1.42910 * 114.09572 * 298.88909 * 27 26 25 29 29 C 1.53086 * 109.41447 * 61.15998 * 28 27 26 30 30 H 0.96995 * 120.00173 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99430 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.46856 * 60.00327 * 10 9 7 33 33 H 1.09000 * 109.47291 * 300.00414 * 10 9 7 34 34 H 1.08991 * 109.47366 * 299.99838 * 13 11 10 35 35 H 1.08999 * 109.47103 * 60.00157 * 13 11 10 36 36 H 1.09000 * 109.47297 * 179.97438 * 14 13 11 37 37 H 1.09007 * 109.47219 * 300.00033 * 14 13 11 38 38 H 1.08998 * 109.46741 * 60.00707 * 15 14 13 39 39 H 1.09005 * 109.46920 * 180.02562 * 15 14 13 40 40 H 1.08999 * 109.46774 * 300.00032 * 16 15 14 41 41 H 1.08999 * 109.47103 * 179.97438 * 16 15 14 42 42 H 0.96998 * 120.00303 * 335.00103 * 19 17 11 43 43 H 1.09001 * 109.46665 * 60.00498 * 22 20 19 44 44 H 1.08993 * 109.47304 * 300.00054 * 22 20 19 45 45 H 1.09001 * 109.46801 * 300.00442 * 23 22 20 46 46 H 1.09001 * 109.46998 * 60.00038 * 23 22 20 47 47 H 1.09000 * 109.53863 * 55.00162 * 24 23 22 48 48 H 1.08998 * 109.52197 * 303.06184 * 25 24 23 49 49 H 1.09000 * 109.52368 * 63.24497 * 25 24 23 50 50 H 1.09002 * 109.40489 * 297.49346 * 26 25 24 51 51 H 1.08996 * 109.49444 * 177.51389 * 26 25 24 52 52 H 1.09000 * 109.47920 * 301.17269 * 28 27 26 53 53 H 1.09003 * 109.48585 * 181.14958 * 28 27 26 54 54 H 1.09002 * 109.52142 * 182.48458 * 29 28 27 55 55 H 1.09004 * 109.57350 * 62.32923 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6998 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6568 0.0016 11 6 1.0640 -4.8197 0.0022 12 1 0.3795 -4.7130 -0.8394 13 6 0.2697 -4.8109 1.3098 14 6 -0.7241 -5.9742 1.3108 15 6 0.0372 -7.2954 1.1853 16 6 0.8315 -7.3042 -0.1223 17 6 1.8248 -6.1412 -0.1234 18 1 2.5092 -6.2478 0.7182 19 7 2.5854 -6.1496 -1.3755 20 6 3.6850 -6.9203 -1.4908 21 8 4.0446 -7.6072 -0.5582 22 6 4.4670 -6.9295 -2.7790 23 6 5.6581 -7.8805 -2.6458 24 6 6.4525 -7.8893 -3.9534 25 6 5.5904 -8.4813 -5.0726 26 6 6.4199 -8.5608 -6.3571 27 8 7.5902 -9.3461 -6.1209 28 6 8.4574 -8.8135 -5.1175 29 6 7.7106 -8.7462 -3.7829 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0016 32 1 2.6855 -3.7141 0.8912 33 1 2.6842 -3.7149 -0.8888 34 1 0.9540 -4.9176 2.1514 35 1 -0.2724 -3.8695 1.3994 36 1 -1.2897 -5.9682 2.2425 37 1 -1.4086 -5.8680 0.4691 38 1 0.7216 -7.4016 2.0270 39 1 -0.6708 -8.1242 1.1855 40 1 0.1470 -7.1980 -0.9638 41 1 1.3743 -8.2453 -0.2114 42 1 2.2976 -5.6005 -2.1215 43 1 4.8273 -5.9231 -2.9924 44 1 3.8237 -7.2652 -3.5922 45 1 6.3016 -7.5452 -1.8324 46 1 5.2975 -8.8868 -2.4325 47 1 6.7380 -6.8700 -4.2133 48 1 5.2626 -9.4815 -4.7896 49 1 4.7208 -7.8452 -5.2378 50 1 6.7118 -7.5560 -6.6625 51 1 5.8257 -9.0221 -7.1458 52 1 8.7761 -7.8121 -5.4068 53 1 9.3311 -9.4570 -5.0132 54 1 8.3559 -8.2994 -3.0265 55 1 7.4271 -9.7518 -3.4720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322359452.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:21 Heat of formation + Delta-G solvation = -138.257321 kcal Electronic energy + Delta-G solvation = -30097.818247 eV Core-core repulsion = 26132.005274 eV Total energy + Delta-G solvation = -3965.812973 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.26836 -40.34390 -39.36495 -36.47736 -36.31034 -35.15742 -33.68966 -32.36929 -31.86683 -31.22834 -30.30267 -27.20958 -26.59804 -24.73352 -24.47698 -23.77384 -22.55715 -21.99317 -21.34498 -20.89980 -20.62809 -19.25403 -17.99082 -17.29182 -16.98609 -16.88087 -16.75277 -16.58964 -15.85245 -15.68333 -15.57874 -15.42508 -15.19431 -15.07366 -14.90736 -14.62124 -14.54436 -14.17619 -13.94348 -13.62370 -13.33733 -13.18068 -13.10778 -12.92764 -12.88051 -12.75388 -12.66998 -12.25891 -12.20900 -12.13970 -12.08908 -11.93334 -11.86361 -11.73329 -11.52461 -11.35136 -11.24201 -11.14732 -11.13395 -10.94966 -10.70435 -10.40382 -9.95068 -8.99043 -7.95542 -5.23710 1.46874 1.47983 1.56498 1.71428 2.26202 2.55141 3.01809 3.37824 3.55180 3.67932 3.72522 3.78830 3.82797 3.93544 4.05258 4.09366 4.11502 4.23898 4.27253 4.30976 4.38283 4.43876 4.45970 4.49833 4.51674 4.53494 4.56912 4.63644 4.71998 4.82565 4.83584 4.85735 4.87696 4.91765 4.96291 5.03969 5.08846 5.11765 5.16851 5.19028 5.21498 5.24183 5.29231 5.30564 5.33504 5.43189 5.47760 5.49901 5.52942 5.63803 6.26828 6.30853 6.62254 7.32179 7.33865 8.09104 8.33871 9.27660 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009344 B = 0.002485 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.920367 B =11265.551775 C =13629.269128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.970 3.030 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.739 5.739 10 C 0.161 3.839 11 C -0.084 4.084 12 H 0.079 0.921 13 C -0.106 4.106 14 C -0.113 4.113 15 C -0.111 4.111 16 C -0.117 4.117 17 C 0.161 3.839 18 H 0.062 0.938 19 N -0.718 5.718 20 C 0.508 3.492 21 O -0.587 6.587 22 C -0.136 4.136 23 C -0.089 4.089 24 C -0.087 4.087 25 C -0.151 4.151 26 C 0.055 3.945 27 O -0.408 6.408 28 C 0.058 3.942 29 C -0.151 4.151 30 H 0.252 0.748 31 H 0.376 0.624 32 H 0.002 0.998 33 H 0.026 0.974 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.411 0.589 43 H 0.108 0.892 44 H 0.118 0.882 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.091 0.909 50 H 0.058 0.942 51 H 0.101 0.899 52 H 0.058 0.942 53 H 0.100 0.900 54 H 0.079 0.921 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.471 -20.236 -10.214 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.382 5.382 10 C 0.034 3.966 11 C -0.104 4.104 12 H 0.098 0.902 13 C -0.144 4.144 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.156 4.156 17 C 0.056 3.944 18 H 0.080 0.920 19 N -0.368 5.368 20 C 0.297 3.703 21 O -0.467 6.467 22 C -0.176 4.176 23 C -0.127 4.127 24 C -0.105 4.105 25 C -0.188 4.188 26 C -0.022 4.022 27 O -0.328 6.328 28 C -0.018 4.018 29 C -0.188 4.188 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.020 0.980 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.247 0.753 43 H 0.126 0.874 44 H 0.136 0.864 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.099 0.901 48 H 0.082 0.918 49 H 0.110 0.890 50 H 0.076 0.924 51 H 0.120 0.880 52 H 0.076 0.924 53 H 0.118 0.882 54 H 0.097 0.903 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.930 -20.785 -9.648 24.593 hybrid contribution -0.145 1.726 0.251 1.750 sum 8.785 -19.058 -9.397 22.993 Atomic orbital electron populations 1.69798 1.06441 1.26061 1.59395 1.25504 0.96381 1.00868 1.03682 0.85189 0.77621 0.79711 0.77535 1.21130 1.22189 1.19862 1.19565 0.91291 0.85489 1.41324 0.91206 1.42519 1.05622 1.00834 1.89266 1.20756 0.93657 0.85020 0.97144 1.21421 0.96832 0.92627 0.99482 0.90239 1.21440 0.97968 0.98897 0.96118 1.21538 0.97397 0.93562 1.02588 1.21477 0.98897 0.97738 0.96809 1.21803 0.97468 0.97123 0.99162 1.20772 0.92505 0.94315 0.86811 0.91970 1.46132 1.27723 1.46155 1.16821 1.21325 0.80242 0.78210 0.90535 1.90667 1.69683 1.43750 1.42619 1.21779 0.97842 1.03395 0.94540 1.21251 0.95427 0.98988 0.97026 1.21206 0.94964 0.99926 0.94428 1.22303 0.99270 1.02052 0.95186 1.22733 0.86179 0.95995 0.97246 1.87898 1.34784 1.51743 1.58329 1.22683 0.92677 0.99668 0.86821 1.22223 0.97445 1.00756 0.98416 0.93965 0.79112 0.98025 0.95640 0.92923 0.93077 0.91063 0.91320 0.92474 0.89972 0.90636 0.92385 0.75274 0.87362 0.86378 0.92731 0.92533 0.90060 0.91830 0.89049 0.92363 0.88046 0.92366 0.88179 0.90257 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.16 13.06 21.65 0.28 -57.88 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.24 -13.57 9.99 84.03 0.84 -12.74 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 9 N -0.74 -36.74 5.33 -343.45 -1.83 -38.57 16 10 C 0.16 6.33 5.57 86.38 0.48 6.81 16 11 C -0.08 -2.57 1.80 -10.79 -0.02 -2.59 16 12 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 13 C -0.11 -3.24 5.08 30.59 0.16 -3.08 16 14 C -0.11 -2.65 5.92 30.60 0.18 -2.47 16 15 C -0.11 -2.35 5.92 30.59 0.18 -2.16 16 16 C -0.12 -2.65 5.49 30.58 0.17 -2.48 16 17 C 0.16 4.32 1.90 44.97 0.09 4.41 16 18 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 19 N -0.72 -16.86 4.30 -442.61 -1.91 -18.77 16 20 C 0.51 12.57 7.79 87.66 0.68 13.25 16 21 O -0.59 -19.31 15.64 -3.04 -0.05 -19.36 16 22 C -0.14 -2.22 5.46 29.85 0.16 -2.06 16 23 C -0.09 -1.56 3.98 30.60 0.12 -1.44 16 24 C -0.09 -1.18 2.27 -10.68 -0.02 -1.20 16 25 C -0.15 -1.83 5.10 30.69 0.16 -1.67 16 26 C 0.05 0.70 6.84 72.02 0.49 1.19 16 27 O -0.41 -7.11 10.77 -148.98 -1.60 -8.71 16 28 C 0.06 0.78 6.84 72.01 0.49 1.27 16 29 C -0.15 -2.10 5.42 30.68 0.17 -1.94 16 30 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.38 19.69 6.85 -92.70 -0.64 19.05 16 32 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.03 0.98 7.30 -2.39 -0.02 0.96 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.85 7.18 -2.39 -0.02 1.83 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.41 8.12 8.39 -92.71 -0.78 7.35 16 43 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.12 1.34 6.65 -2.39 -0.02 1.33 16 45 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 46 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 47 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.09 0.83 6.74 -2.39 -0.02 0.81 16 50 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 53 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 54 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 55 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -69.84 420.46 1.15 -68.69 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.56 Total: 37.34 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 4.79 Total: -10.51 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -3.45 Total: -115.21 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -1.65 Total: -28.07 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -69.84 1.15 -68.69 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322359452.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.570 kcal (2) G-P(sol) polarization free energy of solvation -69.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds