Wall clock time and date at job start Tue Mar 31 2020 21:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47165 * 2 1 4 4 C 1.52996 * 109.47401 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46809 * 299.99845 * 4 3 2 6 6 O 1.42904 * 109.46818 * 179.97438 * 5 4 3 7 7 C 1.42901 * 113.99727 * 150.00161 * 6 5 4 8 8 C 1.50700 * 109.47410 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99584 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00302 * 179.97438 * 8 7 6 11 11 C 1.48150 * 127.83762 * 0.02604 * 10 8 7 12 12 C 1.54383 * 104.61731 * 140.41480 * 11 10 8 13 13 C 1.54286 * 104.95971 * 23.86565 * 12 11 10 14 14 C 1.53002 * 110.34382 * 118.87294 * 13 12 11 15 15 C 1.53004 * 110.34436 * 241.12970 * 13 12 11 16 16 N 1.46497 * 109.47144 * 180.02562 * 15 13 12 17 17 C 1.36943 * 119.99653 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00065 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99599 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99692 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 119.99974 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47294 * 90.00387 * 21 19 17 23 23 H 1.48507 * 109.47191 * 209.99981 * 21 19 17 24 24 H 1.48499 * 109.47605 * 330.00119 * 21 19 17 25 25 C 1.48141 * 127.83857 * 180.02562 * 10 8 7 26 26 C 1.53005 * 109.47336 * 60.00011 * 5 4 3 27 27 C 1.52999 * 109.47132 * 119.99898 * 2 1 3 28 28 H 1.08998 * 109.47386 * 59.99670 * 1 2 3 29 29 H 1.09006 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46760 * 299.99671 * 1 2 3 31 31 H 1.09000 * 109.47024 * 239.99849 * 2 1 3 32 32 H 1.09000 * 109.47273 * 60.00002 * 3 2 1 33 33 H 1.09000 * 109.46731 * 300.00310 * 3 2 1 34 34 H 1.08998 * 109.47126 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.47110 * 59.99651 * 4 3 2 36 36 H 1.09001 * 109.47651 * 299.99794 * 5 4 3 37 37 H 1.09003 * 109.47304 * 59.99985 * 7 6 5 38 38 H 1.09005 * 109.47193 * 300.00173 * 7 6 5 39 39 H 1.09001 * 110.40703 * 21.63048 * 11 10 8 40 40 H 1.08996 * 110.40508 * 259.19762 * 11 10 8 41 41 H 1.08997 * 110.34173 * 264.99537 * 12 11 10 42 42 H 1.09000 * 110.43586 * 142.78329 * 12 11 10 43 43 H 1.09004 * 109.46776 * 59.99639 * 14 13 12 44 44 H 1.08991 * 109.47640 * 179.97438 * 14 13 12 45 45 H 1.09000 * 109.47101 * 300.00109 * 14 13 12 46 46 H 1.09000 * 109.46849 * 300.00069 * 15 13 12 47 47 H 1.08995 * 109.46926 * 59.99962 * 15 13 12 48 48 H 0.96995 * 120.00510 * 0.02562 * 16 15 13 49 49 H 0.97005 * 120.00004 * 179.97438 * 20 19 17 50 50 H 1.09006 * 110.41042 * 100.80325 * 25 10 8 51 51 H 1.09007 * 110.40752 * 338.37282 * 25 10 8 52 52 H 1.09001 * 109.46927 * 59.99341 * 26 5 4 53 53 H 1.09000 * 109.47055 * 179.97438 * 26 5 4 54 54 H 1.09000 * 109.47126 * 299.99888 * 27 2 1 55 55 H 1.08998 * 109.46970 * 60.00371 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0805 0.7212 1.2483 6 8 5.5095 0.7207 1.2474 7 6 6.0915 0.7205 2.5525 8 6 7.5937 0.7207 2.4327 9 8 8.1147 0.7214 1.3375 10 7 8.3583 0.7211 3.5426 11 6 7.9103 0.7208 4.9548 12 6 8.8904 -0.2306 5.6743 13 6 10.1609 -0.2300 4.7990 14 6 11.3561 0.2956 5.5966 15 6 10.4473 -1.6391 4.2760 16 7 11.6563 -1.6167 3.4490 17 6 12.1110 -2.7712 2.8697 18 1 11.5781 -3.6981 3.0222 19 6 13.2563 -2.7499 2.0855 20 7 13.6930 -3.8594 1.5284 21 14 14.1775 -1.1465 1.8212 22 1 15.2020 -0.9833 2.8837 23 1 14.8413 -1.1702 0.4930 24 1 13.2216 -0.0114 1.8767 25 6 9.8373 0.7218 3.6273 26 6 3.5705 -0.7214 1.2484 27 6 2.0400 -0.7212 1.2492 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9333 2.4702 -0.0002 35 1 3.9330 0.9288 -0.8908 36 1 3.7175 1.2349 2.1386 37 1 5.7699 -0.1694 3.0937 38 1 5.7704 1.6106 3.0937 39 1 6.8904 0.3438 5.0299 40 1 7.9774 1.7243 5.3749 41 1 8.4703 -1.2347 5.7317 42 1 9.1181 0.1418 6.6730 43 1 11.5226 -0.3425 6.4645 44 1 12.2449 0.2896 4.9659 45 1 11.1523 1.3138 5.9281 46 1 10.5957 -2.3157 5.1176 47 1 9.6037 -1.9830 3.6777 48 1 12.1351 -0.7843 3.3123 49 1 14.4932 -3.8445 0.9801 50 1 10.2054 1.7255 3.8402 51 1 10.2712 0.3454 2.7008 52 1 3.9334 -1.2351 0.3581 53 1 3.9346 -1.2354 2.1379 54 1 1.6767 -0.2074 2.1392 55 1 1.6767 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324831207.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:36 Heat of formation + Delta-G solvation = -109.369606 kcal Electronic energy + Delta-G solvation = -30414.843353 eV Core-core repulsion = 26450.283045 eV Total energy + Delta-G solvation = -3964.560308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.35117 -40.32711 -39.27213 -37.62183 -36.60340 -34.46484 -32.87869 -32.64423 -31.76031 -30.39852 -29.71988 -27.84313 -26.98445 -26.09084 -24.90815 -23.65180 -23.30703 -22.19013 -20.92061 -20.51752 -20.32607 -19.49454 -18.38968 -17.41738 -17.34940 -16.86730 -16.64625 -16.44989 -16.07060 -15.74190 -15.26907 -15.17071 -15.14579 -14.97461 -14.81484 -14.44689 -14.13405 -14.05934 -13.89665 -13.78115 -13.47299 -13.31609 -13.19043 -13.12062 -12.99912 -12.93587 -12.81167 -12.58377 -12.46867 -12.18125 -12.07127 -11.97197 -11.87362 -11.74669 -11.56336 -11.51682 -11.37018 -11.30751 -11.19227 -11.03978 -10.86758 -10.44153 -9.77665 -9.33415 -8.08257 -5.40484 1.29334 1.35090 1.40800 1.51198 1.64113 2.42372 2.82210 3.22502 3.36217 3.57209 3.67005 3.72271 3.73962 3.80397 3.95089 3.96565 4.07612 4.12645 4.19321 4.26766 4.30306 4.31825 4.35900 4.40485 4.48906 4.54287 4.58882 4.67570 4.72384 4.78019 4.81247 4.85056 4.90767 4.92485 4.95944 4.99172 5.02288 5.05917 5.10302 5.14427 5.16645 5.23091 5.25627 5.32429 5.35784 5.39999 5.43169 5.52196 5.57226 5.69666 6.16203 6.16914 6.53883 7.02905 7.10822 7.79652 7.98003 9.13701 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.002367 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.002416 B =11826.218993 C =12666.236375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.103 4.103 4 C -0.118 4.118 5 C 0.087 3.913 6 O -0.396 6.396 7 C 0.060 3.940 8 C 0.518 3.482 9 O -0.587 6.587 10 N -0.621 5.621 11 C 0.098 3.902 12 C -0.116 4.116 13 C -0.078 4.078 14 C -0.131 4.131 15 C 0.169 3.831 16 N -0.754 5.754 17 C -0.233 4.233 18 H 0.053 0.947 19 C -0.065 4.065 20 N -0.983 5.983 21 Si 0.951 3.049 22 H -0.265 1.265 23 H -0.296 1.296 24 H -0.262 1.262 25 C 0.108 3.892 26 C -0.144 4.144 27 C -0.105 4.105 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.071 0.929 44 H 0.033 0.967 45 H 0.089 0.911 46 H 0.034 0.966 47 H 0.001 0.999 48 H 0.365 0.635 49 H 0.258 0.742 50 H 0.091 0.909 51 H 0.038 0.962 52 H 0.047 0.953 53 H 0.067 0.933 54 H 0.080 0.920 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.059 16.557 11.008 35.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.140 4.140 4 C -0.156 4.156 5 C 0.030 3.970 6 O -0.316 6.316 7 C -0.019 4.019 8 C 0.307 3.693 9 O -0.466 6.466 10 N -0.356 5.356 11 C -0.023 4.023 12 C -0.155 4.155 13 C -0.080 4.080 14 C -0.188 4.188 15 C 0.043 3.957 16 N -0.401 5.401 17 C -0.365 4.365 18 H 0.071 0.929 19 C -0.256 4.256 20 N -0.634 5.634 21 Si 0.778 3.222 22 H -0.190 1.190 23 H -0.223 1.223 24 H -0.187 1.187 25 C -0.015 4.015 26 C -0.182 4.182 27 C -0.142 4.142 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.137 0.863 43 H 0.090 0.910 44 H 0.053 0.947 45 H 0.107 0.893 46 H 0.052 0.948 47 H 0.019 0.981 48 H 0.200 0.800 49 H 0.067 0.933 50 H 0.109 0.891 51 H 0.057 0.943 52 H 0.066 0.934 53 H 0.086 0.914 54 H 0.098 0.902 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.788 16.339 10.126 34.615 hybrid contribution 1.348 -0.089 -1.031 1.700 sum -27.440 16.250 9.094 33.162 Atomic orbital electron populations 1.21791 0.93936 1.02026 1.02335 1.21206 0.96409 0.95963 0.98138 1.21531 0.92483 0.96686 1.03300 1.21609 0.96817 1.00341 0.96821 1.22391 0.78469 0.96160 0.99952 1.88050 1.21478 1.95366 1.26675 1.22268 0.87895 1.04944 0.86843 1.20798 0.90175 0.75656 0.82626 1.90740 1.75927 1.51481 1.28497 1.49014 1.07089 1.72296 1.07201 1.22834 0.99957 1.01777 0.77722 1.22657 0.92385 1.00932 0.99488 1.21681 0.98057 0.93214 0.95004 1.21804 0.95462 1.02204 0.99341 1.20825 0.86870 0.95601 0.92386 1.42759 1.30288 1.06772 1.60241 1.19029 1.06268 0.88403 1.22753 0.92885 1.25503 0.99709 1.00333 1.00070 1.69880 1.26321 1.28206 1.38963 0.85464 0.79018 0.80273 0.77424 1.19026 1.22275 1.18680 1.22488 0.80571 0.99867 0.98572 1.22070 0.97320 0.96689 1.02079 1.21535 0.92890 1.01191 0.98593 0.92439 0.92587 0.91751 0.92469 0.90223 0.90840 0.91426 0.93191 0.89350 0.88080 0.86558 0.87466 0.87575 0.90690 0.86344 0.90966 0.94742 0.89270 0.94807 0.98131 0.80044 0.93306 0.89102 0.94277 0.93430 0.91416 0.90187 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.19 71.98 0.66 -0.62 16 2 C -0.10 -1.18 2.72 -10.79 -0.03 -1.21 16 3 C -0.10 -1.19 5.20 30.59 0.16 -1.03 16 4 C -0.12 -2.06 5.57 30.59 0.17 -1.89 16 5 C 0.09 1.56 2.61 30.60 0.08 1.64 16 6 O -0.40 -10.75 9.52 -129.94 -1.24 -11.99 16 7 C 0.06 1.26 5.21 71.24 0.37 1.63 16 8 C 0.52 16.71 7.99 87.66 0.70 17.41 16 9 O -0.59 -27.02 16.77 15.99 0.27 -26.75 16 10 N -0.62 -16.45 3.32 -807.96 -2.68 -19.13 16 11 C 0.10 1.34 6.92 86.53 0.60 1.94 16 12 C -0.12 -1.90 6.30 31.50 0.20 -1.70 16 13 C -0.08 -2.12 0.73 -51.27 -0.04 -2.16 16 14 C -0.13 -3.07 8.09 71.98 0.58 -2.48 16 15 C 0.17 6.69 4.95 86.38 0.43 7.12 16 16 N -0.75 -37.57 4.59 -343.45 -1.58 -39.15 16 17 C -0.23 -14.26 10.47 84.03 0.88 -13.38 16 18 H 0.05 3.54 8.06 -2.91 -0.02 3.51 16 19 C -0.06 -4.06 5.50 84.86 0.47 -3.60 16 20 N -0.98 -66.31 13.97 21.65 0.30 -66.01 16 21 Si 0.95 48.64 27.73 68.60 1.90 50.55 16 22 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.30 -15.35 7.11 99.48 0.71 -14.65 16 24 H -0.26 -12.57 6.52 99.48 0.65 -11.92 16 25 C 0.11 3.34 5.91 86.53 0.51 3.86 16 26 C -0.14 -2.46 5.54 30.61 0.17 -2.29 16 27 C -0.10 -1.24 5.21 30.61 0.16 -1.08 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.06 7.79 -2.39 -0.02 1.04 16 37 H 0.10 1.62 7.68 -2.39 -0.02 1.60 16 38 H 0.12 1.48 8.09 -2.38 -0.02 1.46 16 39 H 0.11 0.86 7.30 -2.39 -0.02 0.84 16 40 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 1.30 7.71 -2.39 -0.02 1.28 16 42 H 0.12 1.16 7.71 -2.39 -0.02 1.15 16 43 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.03 1.00 6.74 -2.39 -0.02 0.99 16 45 H 0.09 1.45 8.10 -2.39 -0.02 1.43 16 46 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.37 17.48 3.85 -92.71 -0.36 17.12 16 49 H 0.26 16.53 8.31 -92.70 -0.77 15.76 16 50 H 0.09 2.35 7.83 -2.38 -0.02 2.33 16 51 H 0.04 1.66 6.94 -2.38 -0.02 1.64 16 52 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.07 1.09 7.87 -2.39 -0.02 1.07 16 54 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 55 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -89.05 420.86 3.47 -85.58 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.42 Total: 24.75 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 6.07 Total: 2.16 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -3.95 Total: -124.29 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.97 Total: -38.74 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.90 Total: 50.55 kcal Total: -89.05 3.47 -85.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324831207.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.791 kcal (2) G-P(sol) polarization free energy of solvation -89.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds