Wall clock time and date at job start Tue Mar 31 2020 20:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00010 * 2 1 4 4 H 1.48494 * 109.47217 * 269.99916 * 3 2 1 5 5 H 1.48497 * 109.47211 * 29.99791 * 3 2 1 6 6 H 1.48503 * 109.47225 * 149.99550 * 3 2 1 7 7 C 1.38817 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99769 * 194.64269 * 7 2 1 9 9 N 1.36929 * 120.00198 * 14.64809 * 7 2 1 10 10 C 1.47608 * 118.64497 * 27.71223 * 9 7 2 11 11 C 1.53950 * 112.14315 * 137.86926 * 10 9 7 12 12 C 1.50879 * 110.09343 * 319.43775 * 11 10 9 13 13 C 1.52575 * 109.35570 * 91.88787 * 12 11 10 14 14 C 1.47090 * 114.32663 * 274.98174 * 13 12 11 15 15 C 1.44658 * 118.81821 * 207.72575 * 9 7 2 16 16 H 1.09000 * 109.61865 * 150.82705 * 15 9 7 17 17 C 1.53004 * 109.32016 * 30.88569 * 15 9 7 18 18 N 1.46500 * 109.47440 * 54.99468 * 17 15 9 19 19 C 1.34780 * 119.99875 * 179.97438 * 18 17 15 20 20 O 1.21280 * 119.99939 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.99473 * 179.97438 * 19 18 17 22 22 O 1.42904 * 109.46454 * 180.02562 * 21 19 18 23 23 C 1.42906 * 113.99781 * 180.02562 * 22 21 19 24 24 C 1.52998 * 109.47190 * 269.99931 * 23 22 21 25 25 C 1.52995 * 109.47307 * 179.97438 * 24 23 22 26 26 C 1.53004 * 109.47150 * 60.00004 * 25 24 23 27 27 C 1.53005 * 109.47206 * 300.00375 * 26 25 24 28 28 C 1.52998 * 109.47314 * 149.99595 * 23 22 21 29 29 H 0.96996 * 120.00022 * 0.02562 * 1 2 3 30 30 H 1.08999 * 108.94695 * 17.18777 * 10 9 7 31 31 H 1.08996 * 108.95045 * 258.56037 * 10 9 7 32 32 H 1.08997 * 109.36823 * 199.24738 * 11 10 9 33 33 H 1.08996 * 109.36676 * 79.62680 * 11 10 9 34 34 H 1.09001 * 109.49362 * 331.92613 * 12 11 10 35 35 H 1.08994 * 109.49205 * 211.85283 * 12 11 10 36 36 H 1.08996 * 108.50932 * 153.72774 * 13 12 11 37 37 H 1.09001 * 108.38492 * 36.15000 * 13 12 11 38 38 H 1.09007 * 109.32754 * 183.05712 * 14 13 12 39 39 H 1.08996 * 109.33416 * 302.71101 * 14 13 12 40 40 H 1.09007 * 109.46730 * 174.99811 * 17 15 9 41 41 H 1.09008 * 109.46721 * 294.99157 * 17 15 9 42 42 H 0.96996 * 119.99669 * 359.97438 * 18 17 15 43 43 H 1.08997 * 109.47626 * 299.99849 * 21 19 18 44 44 H 1.08998 * 109.47466 * 60.00417 * 21 19 18 45 45 H 1.08998 * 109.46965 * 29.99764 * 23 22 21 46 46 H 1.08996 * 109.46852 * 300.00292 * 24 23 22 47 47 H 1.09007 * 109.47199 * 59.99940 * 24 23 22 48 48 H 1.08998 * 109.47239 * 300.00073 * 25 24 23 49 49 H 1.08998 * 109.47499 * 180.02562 * 25 24 23 50 50 H 1.08990 * 109.47582 * 179.97438 * 26 25 24 51 51 H 1.09004 * 109.46409 * 59.99549 * 26 25 24 52 52 H 1.08998 * 109.46771 * 299.99680 * 27 26 25 53 53 H 1.08993 * 109.47497 * 179.97438 * 27 26 25 54 54 H 1.08998 * 109.47196 * 300.00482 * 28 23 22 55 55 H 1.09007 * 109.46700 * 60.00213 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0640 -1.2172 0.2370 9 7 1.3590 -2.3689 -0.2988 10 6 0.1774 -2.3133 -1.1816 11 6 0.1666 -3.4592 -2.2097 12 6 1.5582 -3.6873 -2.7462 13 6 2.2592 -4.7460 -1.9003 14 6 2.9104 -4.2212 -0.6903 15 6 1.8541 -3.6073 0.2614 16 1 1.0285 -4.3078 0.3876 17 6 2.4958 -3.3268 1.6217 18 7 1.5322 -2.6375 2.4835 19 6 1.8795 -2.2881 3.7380 20 8 2.9899 -2.5438 4.1533 21 6 0.8884 -1.5786 4.6242 22 8 1.4878 -1.3167 5.8947 23 6 0.6272 -0.6434 6.8156 24 6 0.7950 0.8692 6.6580 25 6 -0.1268 1.5901 7.6435 26 6 0.2364 1.1829 9.0729 27 6 0.0687 -0.3297 9.2306 28 6 0.9910 -1.0507 8.2448 29 1 -0.4850 0.8400 -0.0004 30 1 0.1769 -1.3615 -1.7127 31 1 -0.7236 -2.3767 -0.5715 32 1 -0.5001 -3.2006 -3.0323 33 1 -0.1900 -4.3711 -1.7308 34 1 2.1220 -2.7554 -2.7029 35 1 1.4981 -4.0287 -3.7796 36 1 3.0143 -5.2359 -2.5150 37 1 1.5216 -5.4907 -1.6011 38 1 3.4287 -5.0324 -0.1789 39 1 3.6312 -3.4538 -0.9724 40 1 2.7899 -4.2682 2.0858 41 1 3.3760 -2.6983 1.4855 42 1 0.6442 -2.4327 2.1511 43 1 0.5951 -0.6369 4.1602 44 1 0.0078 -2.2065 4.7600 45 1 -0.4080 -0.9172 6.6122 46 1 1.8302 1.1430 6.8614 47 1 0.5358 1.1594 5.6397 48 1 -1.1620 1.3162 7.4397 49 1 -0.0076 2.6677 7.5309 50 1 -0.4199 1.6968 9.7751 51 1 1.2717 1.4568 9.2767 52 1 -0.9665 -0.6036 9.0268 53 1 0.3278 -0.6199 10.2488 54 1 0.8714 -2.1283 8.3571 55 1 2.0263 -0.7768 8.4483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329923769.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:06 Heat of formation + Delta-G solvation = -103.394908 kcal Electronic energy + Delta-G solvation = -31338.123688 eV Core-core repulsion = 27373.822463 eV Total energy + Delta-G solvation = -3964.301225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.90349 -40.05919 -39.41164 -37.25246 -35.96047 -35.21744 -33.31027 -32.46455 -31.74871 -31.07098 -29.38351 -28.02740 -26.80096 -25.19242 -23.68888 -23.47983 -23.07447 -21.63475 -21.07337 -20.78224 -20.69367 -18.53320 -18.10581 -17.51298 -17.27084 -16.85895 -16.70863 -16.16594 -16.00559 -15.88534 -15.38199 -15.25619 -15.19961 -14.85992 -14.77189 -14.47602 -14.26591 -13.90284 -13.70876 -13.54675 -13.38976 -13.24254 -13.15010 -13.04133 -12.86248 -12.82072 -12.71260 -12.37892 -12.09347 -12.01287 -12.00129 -11.53606 -11.52152 -11.48007 -11.39219 -11.31655 -11.27592 -11.19921 -11.03286 -10.69243 -10.44891 -10.35038 -9.81845 -8.55181 -7.79826 -5.22493 1.39206 1.44891 1.49347 1.67585 2.00223 2.51984 3.04713 3.34814 3.60821 3.72724 3.76757 3.90321 4.03891 4.05448 4.09980 4.16076 4.20117 4.26349 4.28651 4.33133 4.34496 4.44276 4.51324 4.53389 4.55815 4.62427 4.65924 4.68298 4.82714 4.92649 5.01935 5.02456 5.08731 5.10056 5.14834 5.20141 5.21824 5.26631 5.28025 5.28948 5.36841 5.39595 5.44174 5.48921 5.56565 5.65187 5.69699 5.77291 5.80670 5.92892 6.16045 6.47546 6.74182 7.27156 7.36606 8.01011 8.39174 9.23405 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.003055 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.520969 B = 9164.020670 C =10277.692484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.023 4.023 3 Si 0.926 3.074 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.046 0.954 9 N -0.588 5.588 10 C 0.188 3.812 11 C -0.132 4.132 12 C -0.104 4.104 13 C -0.100 4.100 14 C -0.129 4.129 15 C 0.174 3.826 16 H 0.061 0.939 17 C 0.134 3.866 18 N -0.686 5.686 19 C 0.506 3.494 20 O -0.586 6.586 21 C 0.053 3.947 22 O -0.386 6.386 23 C 0.082 3.918 24 C -0.145 4.145 25 C -0.113 4.113 26 C -0.121 4.121 27 C -0.110 4.110 28 C -0.114 4.114 29 H 0.246 0.754 30 H 0.038 0.962 31 H 0.005 0.995 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.038 0.962 42 H 0.411 0.589 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.081 0.919 51 H 0.058 0.942 52 H 0.073 0.927 53 H 0.081 0.919 54 H 0.069 0.931 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 -4.931 9.947 12.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.219 4.219 3 Si 0.758 3.242 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.216 1.216 7 C -0.363 4.363 8 H 0.063 0.937 9 N -0.310 5.310 10 C 0.064 3.936 11 C -0.171 4.171 12 C -0.142 4.142 13 C -0.137 4.137 14 C -0.169 4.169 15 C 0.066 3.934 16 H 0.079 0.921 17 C 0.009 3.991 18 N -0.336 5.336 19 C 0.292 3.708 20 O -0.468 6.468 21 C -0.026 4.026 22 O -0.305 6.305 23 C 0.025 3.975 24 C -0.183 4.183 25 C -0.150 4.150 26 C -0.158 4.158 27 C -0.147 4.147 28 C -0.151 4.151 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.024 0.976 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.247 0.753 43 H 0.096 0.904 44 H 0.122 0.878 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.087 0.913 50 H 0.100 0.900 51 H 0.077 0.923 52 H 0.092 0.908 53 H 0.100 0.900 54 H 0.087 0.913 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.059 -5.048 10.275 12.147 hybrid contribution 0.185 1.723 -0.632 1.844 sum -3.874 -3.325 9.643 10.911 Atomic orbital electron populations 1.70096 1.05195 1.24960 1.56039 1.25186 0.95605 0.99123 1.01992 0.85911 0.78230 0.82948 0.77125 1.21757 1.22224 1.21646 1.18968 0.91329 0.85702 1.40260 0.93667 1.43790 1.32421 1.01810 1.52986 1.20804 0.87208 0.95653 0.89955 1.21940 0.97126 0.99320 0.98731 1.20912 0.96059 0.98871 0.98311 1.20274 0.99719 0.97700 0.96052 1.21295 0.98552 0.99730 0.97368 1.20701 0.94884 0.88366 0.89430 0.92089 1.21466 0.91805 0.95132 0.90653 1.45594 1.18153 1.58153 1.11704 1.20643 0.88267 0.78998 0.82847 1.90621 1.23837 1.56939 1.75357 1.22178 0.94925 1.00438 0.85067 1.87998 1.41164 1.78616 1.22699 1.22418 0.93903 0.91431 0.89742 1.22064 1.00782 0.95561 0.99894 1.21490 0.99134 0.99910 0.94516 1.21588 1.01963 0.96066 0.96201 1.21508 0.99573 0.94800 0.98838 1.21605 1.00592 1.00938 0.91997 0.94390 0.94300 0.97642 0.92132 0.92078 0.94062 0.91885 0.92035 0.91871 0.90907 0.94087 0.91615 0.94375 0.75329 0.90362 0.87769 0.90639 0.92590 0.93078 0.90979 0.91291 0.90030 0.92342 0.90797 0.89992 0.91261 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.09 11.03 21.65 0.24 -47.85 16 2 C -0.02 -1.16 4.89 84.86 0.41 -0.75 16 3 Si 0.93 44.40 29.58 68.60 2.03 46.43 16 4 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 6 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 7 C -0.23 -11.49 7.66 84.04 0.64 -10.85 16 8 H 0.05 2.41 6.73 -2.91 -0.02 2.39 16 9 N -0.59 -25.05 1.77 -674.05 -1.19 -26.24 16 10 C 0.19 7.95 4.66 86.49 0.40 8.36 16 11 C -0.13 -4.32 5.70 30.23 0.17 -4.15 16 12 C -0.10 -3.23 5.51 29.76 0.16 -3.06 16 13 C -0.10 -2.76 5.16 28.62 0.15 -2.61 16 14 C -0.13 -4.05 5.07 29.39 0.15 -3.90 16 15 C 0.17 6.22 2.19 45.97 0.10 6.32 16 16 H 0.06 2.04 8.05 -2.39 -0.02 2.02 16 17 C 0.13 5.13 4.52 86.38 0.39 5.52 16 18 N -0.69 -26.73 4.72 -463.04 -2.19 -28.92 16 19 C 0.51 20.60 7.91 87.66 0.69 21.29 16 20 O -0.59 -28.31 16.50 16.01 0.26 -28.05 16 21 C 0.05 1.78 6.23 71.24 0.44 2.22 16 22 O -0.39 -13.33 9.52 -129.94 -1.24 -14.57 16 23 C 0.08 2.10 2.61 30.59 0.08 2.18 16 24 C -0.15 -3.64 5.54 30.59 0.17 -3.47 16 25 C -0.11 -2.07 5.92 30.59 0.18 -1.89 16 26 C -0.12 -1.86 5.92 30.60 0.18 -1.68 16 27 C -0.11 -1.67 5.93 30.61 0.18 -1.49 16 28 C -0.11 -2.45 5.58 30.61 0.17 -2.28 16 29 H 0.25 12.93 8.31 -92.71 -0.77 12.16 16 30 H 0.04 1.91 6.39 -2.39 -0.02 1.90 16 31 H 0.01 0.25 8.02 -2.39 -0.02 0.23 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.81 7.31 -2.39 -0.02 1.79 16 34 H 0.04 1.56 7.48 -2.39 -0.02 1.54 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.58 7.34 -2.39 -0.02 1.56 16 38 H 0.07 1.96 8.11 -2.38 -0.02 1.94 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.04 1.69 6.84 -2.38 -0.02 1.67 16 42 H 0.41 16.08 8.08 -92.71 -0.75 15.33 16 43 H 0.08 2.63 7.87 -2.39 -0.02 2.61 16 44 H 0.10 2.74 8.08 -2.39 -0.02 2.72 16 45 H 0.08 1.67 7.79 -2.39 -0.02 1.65 16 46 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.05 1.41 7.87 -2.38 -0.02 1.39 16 48 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.06 0.96 8.14 -2.38 -0.02 0.95 16 52 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 54 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 55 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -62.26 413.68 2.69 -59.56 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.09 Total: 29.86 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 4.69 Total: 9.77 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -3.14 Total: -103.01 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.97 Total: -42.62 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -62.26 2.69 -59.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329923769.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.834 kcal (2) G-P(sol) polarization free energy of solvation -62.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds