Wall clock time and date at job start Tue Mar 31 2020 21:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47341 * 2 1 4 4 C 1.52990 * 109.47130 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47347 * 299.99755 * 4 3 2 6 6 O 1.42897 * 109.47271 * 180.02562 * 5 4 3 7 7 C 1.42900 * 114.00008 * 149.99813 * 6 5 4 8 8 C 1.50703 * 109.47069 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00003 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99795 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99796 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.78197 * 323.21491 * 11 10 8 13 13 C 1.54326 * 110.71771 * 86.45509 * 11 10 8 14 14 N 1.47027 * 107.27141 * 96.16995 * 13 11 10 15 15 C 1.36941 * 125.64662 * 178.97408 * 14 13 11 16 16 H 1.07994 * 119.99846 * 174.78554 * 15 14 13 17 17 C 1.38814 * 119.99779 * 354.78984 * 15 14 13 18 18 N 1.31616 * 120.00398 * 7.05427 * 17 15 14 19 19 Si 1.86803 * 119.99710 * 187.05125 * 17 15 14 20 20 H 1.48507 * 109.46882 * 94.98652 * 19 17 15 21 21 H 1.48497 * 109.47180 * 214.98837 * 19 17 15 22 22 H 1.48501 * 109.46955 * 334.99154 * 19 17 15 23 23 C 1.47420 * 108.70274 * 358.94077 * 14 13 11 24 24 C 1.54911 * 104.83517 * 24.12701 * 23 14 13 25 25 C 1.52997 * 111.00500 * 204.91935 * 24 23 14 26 26 C 1.53004 * 111.00210 * 81.06553 * 24 23 14 27 27 C 1.52999 * 109.46805 * 60.00046 * 5 4 3 28 28 C 1.52998 * 109.46995 * 299.99871 * 27 5 4 29 29 H 1.09001 * 109.47007 * 60.00722 * 1 2 3 30 30 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47504 * 300.00462 * 1 2 3 32 32 H 1.08999 * 109.47256 * 239.99064 * 2 1 3 33 33 H 1.08997 * 109.47198 * 59.99351 * 3 2 1 34 34 H 1.09001 * 109.46480 * 299.99600 * 3 2 1 35 35 H 1.09000 * 109.47391 * 179.97438 * 4 3 2 36 36 H 1.08997 * 109.47400 * 59.99731 * 4 3 2 37 37 H 1.08999 * 109.46588 * 299.99847 * 5 4 3 38 38 H 1.09003 * 109.46848 * 60.00141 * 7 6 5 39 39 H 1.08994 * 109.47203 * 299.99859 * 7 6 5 40 40 H 0.96998 * 120.00234 * 0.02562 * 10 8 7 41 41 H 1.09004 * 109.87906 * 215.58694 * 13 11 10 42 42 H 1.08994 * 109.88446 * 336.59631 * 13 11 10 43 43 H 0.96997 * 120.00021 * 179.97438 * 18 17 15 44 44 H 1.08999 * 110.36469 * 142.96736 * 23 14 13 45 45 H 1.09008 * 110.36573 * 265.17995 * 23 14 13 46 46 H 1.09002 * 109.46928 * 172.19881 * 25 24 23 47 47 H 1.09004 * 109.47148 * 292.19559 * 25 24 23 48 48 H 1.08992 * 109.47603 * 52.19463 * 25 24 23 49 49 H 1.08998 * 109.47042 * 307.80616 * 26 24 23 50 50 H 1.08994 * 109.46767 * 67.80576 * 26 24 23 51 51 H 1.08995 * 109.46941 * 187.80610 * 26 24 23 52 52 H 1.08997 * 109.47198 * 60.00479 * 27 5 4 53 53 H 1.09001 * 109.46480 * 180.02562 * 27 5 4 54 54 H 1.08997 * 109.47644 * 300.00336 * 28 27 5 55 55 H 1.09000 * 109.46817 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0795 0.7214 1.2503 6 8 5.5085 0.7218 1.2512 7 6 6.0889 0.7221 2.5570 8 6 7.5913 0.7220 2.4389 9 8 8.1135 0.7212 1.3444 10 7 8.3545 0.7217 3.5497 11 6 9.8150 0.7210 3.4349 12 1 10.1363 0.1105 2.5910 13 6 10.3530 2.1614 3.3031 14 7 10.7553 2.6019 4.6469 15 6 11.3035 3.8177 4.9575 16 1 11.4881 4.0792 5.9889 17 6 11.6218 4.7141 3.9465 18 7 11.2714 4.4566 2.7042 19 14 12.5475 6.2859 4.3492 20 1 14.0014 6.0731 4.1338 21 1 12.0713 7.3808 3.4663 22 1 12.3058 6.6530 5.7676 23 6 10.4700 1.5181 5.6047 24 6 10.4689 0.2250 4.7517 25 6 9.6198 -0.8649 5.4090 26 6 11.8954 -0.2693 4.5033 27 6 3.5694 -0.7211 1.2503 28 6 2.0395 -0.7210 1.2497 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5140 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 3.9334 2.4700 0.0002 36 1 3.9337 0.9284 -0.8890 37 1 3.7158 1.2354 2.1400 38 1 5.7672 -0.1680 3.0977 39 1 5.7667 1.6120 3.0976 40 1 7.9368 0.7212 4.4252 41 1 11.2141 2.1758 2.6350 42 1 9.5718 2.8148 2.9147 43 1 11.4936 5.0832 1.9978 44 1 11.2487 1.4698 6.3658 45 1 9.4954 1.6690 6.0691 46 1 9.5222 -1.7099 4.7274 47 1 10.1010 -1.1945 6.3298 48 1 8.6314 -0.4668 5.6381 49 1 12.4970 0.5450 4.0996 50 1 12.3301 -0.6111 5.4426 51 1 11.8753 -1.0940 3.7909 52 1 3.9332 -1.2351 0.3606 53 1 3.9321 -1.2346 2.1408 54 1 1.6757 -0.2070 2.1394 55 1 1.6761 -1.7487 1.2492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330263027.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:53 Heat of formation + Delta-G solvation = -102.765531 kcal Electronic energy + Delta-G solvation = -30702.445507 eV Core-core repulsion = 26738.171574 eV Total energy + Delta-G solvation = -3964.273933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.30488 -40.31760 -39.35130 -37.59520 -35.69727 -34.50285 -32.72397 -32.61757 -31.74128 -30.38574 -28.77563 -27.86727 -27.34409 -26.43127 -24.99356 -23.63694 -22.39933 -22.15904 -21.45872 -20.73333 -20.14970 -18.69281 -18.29581 -17.90316 -17.03481 -16.97543 -16.58216 -16.30668 -15.70800 -15.43318 -15.30391 -15.18380 -15.11701 -15.00963 -14.70096 -14.13521 -13.93236 -13.80152 -13.75146 -13.51227 -13.40130 -13.17350 -13.13443 -12.96193 -12.86682 -12.81931 -12.71731 -12.57573 -12.44560 -12.10430 -12.04634 -11.86288 -11.75838 -11.71860 -11.54008 -11.51145 -11.30560 -11.29789 -11.16920 -10.84369 -10.69295 -10.40664 -9.99372 -8.89194 -7.84930 -5.20668 1.42885 1.45445 1.54305 1.62308 1.87016 2.48470 2.97440 3.33302 3.49485 3.68453 3.74222 3.74382 3.84814 3.96679 3.98829 4.08708 4.12468 4.17934 4.23027 4.32134 4.33091 4.40613 4.50791 4.53640 4.56348 4.61766 4.70483 4.82726 4.86552 4.90043 4.92359 4.95326 4.96738 5.00617 5.06162 5.13016 5.14447 5.17508 5.17747 5.24306 5.27950 5.31640 5.37658 5.41186 5.44604 5.46765 5.57968 5.58843 5.71564 5.74740 6.17407 6.18663 6.62659 7.07373 7.31587 7.77855 8.42545 9.24769 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014119 B = 0.002462 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.653254 B =11372.390183 C =12753.600177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.104 4.104 4 C -0.120 4.120 5 C 0.083 3.917 6 O -0.392 6.392 7 C 0.053 3.947 8 C 0.504 3.496 9 O -0.578 6.578 10 N -0.696 5.696 11 C 0.139 3.861 12 H 0.073 0.927 13 C 0.193 3.807 14 N -0.620 5.620 15 C -0.235 4.235 16 H 0.089 0.911 17 C -0.072 4.072 18 N -0.953 5.953 19 Si 0.976 3.024 20 H -0.289 1.289 21 H -0.301 1.301 22 H -0.261 1.261 23 C 0.138 3.862 24 C -0.073 4.073 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.138 4.138 28 C -0.106 4.106 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.413 0.587 41 H 0.003 0.997 42 H -0.004 1.004 43 H 0.243 0.757 44 H 0.049 0.951 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.079 0.921 48 H 0.067 0.933 49 H 0.027 0.973 50 H 0.080 0.920 51 H 0.064 0.936 52 H 0.056 0.944 53 H 0.073 0.927 54 H 0.073 0.927 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.919 -14.779 3.740 25.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.142 4.142 4 C -0.157 4.157 5 C 0.026 3.974 6 O -0.311 6.311 7 C -0.026 4.026 8 C 0.291 3.709 9 O -0.457 6.457 10 N -0.350 5.350 11 C 0.033 3.967 12 H 0.091 0.909 13 C 0.066 3.934 14 N -0.347 5.347 15 C -0.364 4.364 16 H 0.106 0.894 17 C -0.264 4.264 18 N -0.603 5.603 19 Si 0.805 3.195 20 H -0.216 1.216 21 H -0.228 1.228 22 H -0.186 1.186 23 C 0.013 3.987 24 C -0.075 4.075 25 C -0.181 4.181 26 C -0.182 4.182 27 C -0.176 4.176 28 C -0.143 4.143 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.134 0.866 39 H 0.115 0.885 40 H 0.251 0.749 41 H 0.022 0.978 42 H 0.014 0.986 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.047 0.953 50 H 0.099 0.901 51 H 0.083 0.917 52 H 0.074 0.926 53 H 0.091 0.909 54 H 0.092 0.908 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.394 -14.597 2.720 25.227 hybrid contribution 0.789 1.516 -0.118 1.713 sum -19.605 -13.081 2.601 23.712 Atomic orbital electron populations 1.21795 0.94025 1.02158 1.02145 1.21196 0.96322 0.95509 0.98466 1.21538 0.92476 0.97189 1.02975 1.21610 0.96864 1.00056 0.97201 1.22400 0.78734 0.96777 0.99447 1.88039 1.21278 1.95394 1.26432 1.22292 0.88564 1.04833 0.86924 1.21035 0.90368 0.75467 0.84066 1.90705 1.75873 1.50411 1.28735 1.45701 1.06018 1.74350 1.08927 1.22045 0.79645 0.96310 0.98742 0.90927 1.21065 0.95047 0.90511 0.86732 1.44698 1.73013 1.13243 1.03701 1.19479 1.32131 0.91799 0.92998 0.89352 1.25722 1.02682 1.02626 0.95388 1.70261 1.51851 1.37818 1.00336 0.85084 0.78135 0.78663 0.77641 1.21598 1.22780 1.18573 1.21917 0.98342 0.86319 0.92089 1.21987 0.96677 0.95721 0.93082 1.21658 0.99078 0.96447 1.00929 1.21600 0.94154 0.99976 1.02486 1.22017 0.97039 0.95912 1.02596 1.21540 0.93171 1.01340 0.98269 0.92549 0.92158 0.92146 0.91851 0.90898 0.90954 0.92482 0.92524 0.90426 0.86596 0.88543 0.74930 0.97837 0.98627 0.94818 0.93257 0.94780 0.91660 0.90249 0.91393 0.95333 0.90133 0.91713 0.92553 0.90878 0.90812 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.19 71.98 0.66 -0.75 16 2 C -0.10 -1.23 2.72 -10.79 -0.03 -1.25 16 3 C -0.10 -1.51 5.20 30.59 0.16 -1.35 16 4 C -0.12 -2.48 5.57 30.59 0.17 -2.31 16 5 C 0.08 1.73 2.61 30.60 0.08 1.81 16 6 O -0.39 -11.72 9.52 -129.94 -1.24 -12.95 16 7 C 0.05 1.33 6.23 71.24 0.44 1.78 16 8 C 0.50 18.04 7.90 87.66 0.69 18.74 16 9 O -0.58 -27.69 16.23 16.02 0.26 -27.43 16 10 N -0.70 -22.50 4.57 -436.91 -2.00 -24.49 16 11 C 0.14 5.42 2.51 46.18 0.12 5.54 16 12 H 0.07 3.07 7.61 -2.39 -0.02 3.05 16 13 C 0.19 10.19 4.80 86.73 0.42 10.60 16 14 N -0.62 -31.65 3.38 -691.97 -2.34 -33.99 16 15 C -0.24 -13.23 10.27 84.03 0.86 -12.36 16 16 H 0.09 4.66 7.84 -2.91 -0.02 4.64 16 17 C -0.07 -4.22 5.48 84.86 0.46 -3.75 16 18 N -0.95 -61.22 10.36 21.65 0.22 -61.00 16 19 Si 0.98 47.23 29.56 68.60 2.03 49.25 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 21 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.14 5.16 6.14 86.86 0.53 5.69 16 24 C -0.07 -2.27 0.83 -50.79 -0.04 -2.31 16 25 C -0.12 -2.52 8.22 71.98 0.59 -1.93 16 26 C -0.12 -3.82 8.57 71.98 0.62 -3.20 16 27 C -0.14 -2.30 5.54 30.59 0.17 -2.13 16 28 C -0.11 -1.28 5.20 30.60 0.16 -1.12 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.32 7.79 -2.39 -0.02 1.30 16 38 H 0.12 1.90 7.87 -2.39 -0.02 1.88 16 39 H 0.10 2.05 8.08 -2.39 -0.02 2.03 16 40 H 0.41 10.14 6.90 -92.71 -0.64 9.50 16 41 H 0.00 0.21 7.30 -2.38 -0.02 0.20 16 42 H 0.00 -0.28 7.51 -2.39 -0.02 -0.30 16 43 H 0.24 15.34 8.31 -92.71 -0.77 14.57 16 44 H 0.05 1.78 8.05 -2.39 -0.02 1.77 16 45 H 0.03 1.18 7.99 -2.38 -0.02 1.16 16 46 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 48 H 0.07 1.17 6.38 -2.39 -0.02 1.16 16 49 H 0.03 1.09 7.91 -2.39 -0.02 1.07 16 50 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 53 H 0.07 1.07 7.87 -2.39 -0.02 1.05 16 54 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 55 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -81.47 421.45 3.20 -78.27 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.19 Total: 20.66 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 6.07 Total: 11.68 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -4.11 Total: -119.48 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.98 Total: -40.39 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -81.47 3.20 -78.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330263027.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.499 kcal (2) G-P(sol) polarization free energy of solvation -81.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds