Wall clock time and date at job start Tue Mar 31 2020 21:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99733 * 2 1 4 4 H 1.48496 * 109.47062 * 269.99985 * 3 2 1 5 5 H 1.48501 * 109.47147 * 30.00138 * 3 2 1 6 6 H 1.48507 * 109.46921 * 150.00034 * 3 2 1 7 7 C 1.37874 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00080 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47256 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46990 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47003 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47124 * 54.99909 * 12 11 10 14 14 N 1.46902 * 109.47167 * 295.00154 * 12 11 10 15 15 C 1.50705 * 109.47381 * 175.00198 * 12 11 10 16 16 O 1.21271 * 119.99939 * 99.99956 * 15 12 11 17 17 N 1.34780 * 119.99400 * 279.99720 * 15 12 11 18 18 C 1.46926 * 120.63278 * 0.02562 * 17 15 12 19 19 C 1.53191 * 108.89109 * 126.46534 * 18 17 15 20 20 C 1.53044 * 109.31440 * 54.56430 * 19 18 17 21 21 C 1.53040 * 109.53662 * 298.63203 * 20 19 18 22 22 H 1.08996 * 109.49892 * 301.41776 * 21 20 19 23 23 C 1.52995 * 109.49694 * 181.31470 * 21 20 19 24 24 C 1.53182 * 109.54183 * 179.82422 * 23 21 20 25 25 C 1.53110 * 109.15618 * 183.24323 * 24 23 21 26 26 O 1.42909 * 109.48405 * 57.47560 * 25 24 23 27 27 C 1.42908 * 114.09710 * 298.88299 * 26 25 24 28 28 C 1.53095 * 109.41238 * 61.16386 * 27 26 25 29 29 C 1.46957 * 120.64915 * 179.81885 * 17 15 12 30 30 H 0.96992 * 119.99866 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46812 * 60.00508 * 9 7 2 32 32 H 1.08994 * 109.47466 * 300.00318 * 9 7 2 33 33 H 1.09007 * 109.46540 * 60.00011 * 10 9 7 34 34 H 1.08994 * 109.47161 * 300.00527 * 10 9 7 35 35 H 1.08993 * 109.47173 * 60.00223 * 11 10 9 36 36 H 1.09003 * 109.47012 * 299.99653 * 11 10 9 37 37 H 1.00900 * 111.00262 * 176.05122 * 14 12 11 38 38 H 1.00909 * 110.99389 * 299.99823 * 14 12 11 39 39 H 1.09002 * 109.58861 * 6.60537 * 18 17 15 40 40 H 1.08996 * 109.58519 * 246.32428 * 18 17 15 41 41 H 1.09003 * 109.49294 * 174.51508 * 19 18 17 42 42 H 1.08997 * 109.50161 * 294.61021 * 19 18 17 43 43 H 1.08994 * 109.45986 * 58.65006 * 20 19 18 44 44 H 1.09001 * 109.45959 * 178.62334 * 20 19 18 45 45 H 1.08994 * 109.54486 * 300.00156 * 23 21 20 46 46 H 1.09001 * 109.52004 * 303.05879 * 24 23 21 47 47 H 1.08999 * 109.52445 * 63.24968 * 24 23 21 48 48 H 1.08994 * 109.40623 * 297.49633 * 25 24 23 49 49 H 1.08993 * 109.48380 * 177.50016 * 25 24 23 50 50 H 1.09001 * 109.48155 * 301.18252 * 27 26 25 51 51 H 1.08997 * 109.48637 * 181.14843 * 27 26 25 52 52 H 1.08995 * 109.52403 * 182.48145 * 28 27 26 53 53 H 1.09001 * 109.52467 * 62.29220 * 28 27 26 54 54 H 1.09001 * 109.46843 * 113.75181 * 29 17 15 55 55 H 1.08997 * 109.71602 * 353.46674 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 2.4746 -6.1500 -0.0031 13 1 3.1588 -6.0435 0.8387 14 7 3.2377 -6.1412 -1.2584 15 6 1.7253 -7.4517 0.1200 16 8 1.5130 -8.1248 -0.8662 17 7 1.2911 -7.8677 1.3263 18 6 1.5403 -7.0629 2.5300 19 6 0.2087 -6.8166 3.2463 20 6 -0.4757 -8.1583 3.5179 21 6 -0.7645 -8.8635 2.1908 22 1 -1.3982 -8.2285 1.5717 23 6 -1.4780 -10.1894 2.4618 24 6 -1.7715 -10.8941 1.1337 25 6 -2.5565 -12.1794 1.4097 26 8 -3.7579 -11.8619 2.1155 27 6 -3.5423 -11.2449 3.3863 28 6 -2.7988 -9.9211 3.1897 29 6 0.5556 -9.1327 1.4624 30 1 -0.4849 0.8400 -0.0004 31 1 0.6242 -2.5567 -0.8904 32 1 0.6248 -2.5572 0.8896 33 1 2.8727 -3.6047 0.8878 34 1 2.8714 -3.6039 -0.8922 35 1 0.8534 -5.0442 -0.8922 36 1 0.8542 -5.0455 0.8878 37 1 3.9454 -6.8604 -1.2565 38 1 2.6253 -6.2386 -2.0544 39 1 1.9845 -6.1089 2.2462 40 1 2.2187 -7.5988 3.1938 41 1 0.3930 -6.3044 4.1907 42 1 -0.4343 -6.2009 2.6174 43 1 0.1783 -8.7829 4.1263 44 1 -1.4119 -7.9873 4.0494 45 1 -0.8439 -10.8252 3.0795 46 1 -2.3630 -10.2374 0.4958 47 1 -0.8331 -11.1386 0.6359 48 1 -1.9479 -12.8531 2.0127 49 1 -2.8067 -12.6624 0.4652 50 1 -2.9464 -11.9065 4.0152 51 1 -4.5025 -11.0548 3.8658 52 1 -2.5945 -9.4703 4.1608 53 1 -3.4117 -9.2441 2.5945 54 1 1.1526 -9.8399 2.0381 55 1 0.3503 -9.5467 0.4752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341370039.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:24 Heat of formation + Delta-G solvation = -141.362623 kcal Electronic energy + Delta-G solvation = -30747.693034 eV Core-core repulsion = 26781.745405 eV Total energy + Delta-G solvation = -3965.947629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.69063 -40.48296 -38.68613 -37.21787 -35.83321 -35.23266 -33.35041 -33.13858 -32.05954 -31.34961 -29.58591 -27.49004 -26.32972 -25.81561 -24.49170 -23.64452 -23.14922 -21.73933 -21.50870 -20.96256 -19.84661 -18.54770 -18.42591 -17.34792 -17.17473 -16.96130 -16.79316 -16.48035 -16.25957 -16.05275 -15.67894 -15.44417 -15.17408 -14.95804 -14.80434 -14.59022 -14.35362 -14.28918 -14.11551 -13.95738 -13.59090 -13.29799 -13.17987 -13.07452 -12.83665 -12.64220 -12.50595 -12.36536 -12.30093 -12.18005 -12.07113 -11.96725 -11.73502 -11.63083 -11.42931 -11.35528 -11.24011 -11.18229 -11.07341 -10.94945 -10.52235 -10.43377 -9.70810 -9.66808 -8.17000 -6.27478 1.41260 1.42912 1.43782 1.54044 1.96393 2.43440 2.98146 3.16122 3.36027 3.52303 3.58166 3.65656 3.76757 3.93273 3.99839 4.04887 4.05723 4.06342 4.12988 4.20955 4.30256 4.34287 4.44810 4.47923 4.51215 4.59038 4.62159 4.64556 4.74422 4.78247 4.81171 4.85396 4.88706 4.89896 4.92850 5.00467 5.09267 5.11493 5.13361 5.15348 5.24474 5.31747 5.33220 5.36170 5.49204 5.51968 5.60436 5.83102 5.93003 6.00500 6.28094 6.30040 6.30377 6.44658 6.90247 7.03048 7.41623 8.94871 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.002278 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.275288 B =12286.417248 C =13183.601948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.023 3.977 10 C -0.082 4.082 11 C -0.092 4.092 12 C 0.086 3.914 13 H 0.122 0.878 14 N -0.817 5.817 15 C 0.482 3.518 16 O -0.586 6.586 17 N -0.604 5.604 18 C 0.096 3.904 19 C -0.138 4.138 20 C -0.110 4.110 21 C -0.088 4.088 22 H 0.047 0.953 23 C -0.073 4.073 24 C -0.154 4.154 25 C 0.060 3.940 26 O -0.410 6.410 27 C 0.056 3.944 28 C -0.148 4.148 29 C 0.112 3.888 30 H 0.262 0.738 31 H -0.019 1.019 32 H -0.007 1.007 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.349 0.651 38 H 0.344 0.656 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.046 0.954 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.049 0.951 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.065 0.935 51 H 0.100 0.900 52 H 0.094 0.906 53 H 0.053 0.947 54 H 0.085 0.915 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.388 -26.222 11.994 28.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.575 4.575 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.120 4.120 11 C -0.131 4.131 12 C -0.029 4.029 13 H 0.139 0.861 14 N -0.346 5.346 15 C 0.269 3.731 16 O -0.467 6.467 17 N -0.336 5.336 18 C -0.026 4.026 19 C -0.176 4.176 20 C -0.147 4.147 21 C -0.107 4.107 22 H 0.065 0.935 23 C -0.092 4.092 24 C -0.191 4.191 25 C -0.016 4.016 26 O -0.329 6.329 27 C -0.020 4.020 28 C -0.186 4.186 29 C -0.010 4.010 30 H 0.071 0.929 31 H -0.001 1.001 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.068 0.932 47 H 0.096 0.904 48 H 0.084 0.916 49 H 0.113 0.887 50 H 0.083 0.917 51 H 0.118 0.882 52 H 0.112 0.888 53 H 0.072 0.928 54 H 0.103 0.897 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.574 -25.756 11.623 28.263 hybrid contribution -0.336 0.302 -0.610 0.759 sum -0.910 -25.454 11.013 27.749 Atomic orbital electron populations 1.70106 1.07830 1.27626 1.52100 1.25995 0.95750 1.03383 0.94929 0.85470 0.78810 0.78533 0.78384 1.20098 1.20772 1.18446 1.21720 0.93580 0.92357 1.49886 0.92103 1.19037 0.94507 0.93492 0.94343 1.21274 0.97497 0.91863 1.01330 1.21460 0.96691 0.93534 1.01381 1.21632 0.95480 0.89831 0.95973 0.86068 1.59068 1.17558 1.54851 1.03138 1.22452 0.79279 0.88634 0.82686 1.90632 1.59538 1.58558 1.37952 1.48311 1.54868 1.22882 1.07512 1.22092 0.98413 0.96294 0.85826 1.21941 0.95989 0.98255 1.01392 1.21613 1.01608 0.95525 0.95939 1.21446 0.95100 0.96810 0.97372 0.93462 1.21129 0.96434 0.95384 0.96271 1.22286 1.00911 0.97932 0.98009 1.22656 0.86166 0.95535 0.97263 1.87912 1.31524 1.80371 1.33120 1.22740 1.01566 0.92999 0.84687 1.22265 0.96061 0.98291 1.01977 1.21741 0.92568 0.85327 1.01353 0.92908 1.00074 0.98902 0.92355 0.92553 0.94034 0.91186 0.83760 0.84214 0.89334 0.88518 0.88526 0.93552 0.89683 0.90456 0.89006 0.93164 0.90375 0.91630 0.88698 0.91673 0.88234 0.88755 0.92814 0.89677 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.78 13.29 21.45 0.28 -57.49 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 3 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.08 -3.33 5.04 30.59 0.15 -3.18 16 11 C -0.09 -3.11 4.51 30.59 0.14 -2.97 16 12 C 0.09 2.34 2.29 44.17 0.10 2.44 16 13 H 0.12 2.77 6.80 -2.39 -0.02 2.76 16 14 N -0.82 -22.45 8.44 -171.79 -1.45 -23.90 16 15 C 0.48 13.38 6.94 87.66 0.61 13.99 16 16 O -0.59 -20.03 15.67 -3.00 -0.05 -20.07 16 17 N -0.60 -13.00 2.98 -818.90 -2.44 -15.44 16 18 C 0.10 1.59 5.75 86.36 0.50 2.08 16 19 C -0.14 -2.19 6.08 30.67 0.19 -2.00 16 20 C -0.11 -1.37 4.86 30.62 0.15 -1.23 16 21 C -0.09 -1.41 1.93 -10.73 -0.02 -1.43 16 22 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 23 C -0.07 -0.94 1.86 -10.67 -0.02 -0.96 16 24 C -0.15 -2.38 4.99 30.69 0.15 -2.22 16 25 C 0.06 0.86 6.84 72.02 0.49 1.35 16 26 O -0.41 -7.46 10.77 -148.98 -1.60 -9.06 16 27 C 0.06 0.71 6.84 72.01 0.49 1.20 16 28 C -0.15 -1.86 4.98 30.69 0.15 -1.71 16 29 C 0.11 2.10 5.19 86.34 0.45 2.55 16 30 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 31 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.06 2.37 7.75 -2.39 -0.02 2.35 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 2.25 6.96 -2.39 -0.02 2.23 16 37 H 0.35 8.14 9.06 -89.69 -0.81 7.33 16 38 H 0.34 10.20 8.58 -89.69 -0.77 9.43 16 39 H 0.09 1.62 4.83 -2.39 -0.01 1.61 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.89 6.45 -2.39 -0.02 0.87 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.08 1.16 6.76 -2.39 -0.02 1.15 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.09 0.86 6.60 -2.39 -0.02 0.85 16 53 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 54 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 55 H 0.07 1.64 5.71 -2.39 -0.01 1.63 16 Total: -1.00 -72.69 413.62 0.44 -72.25 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -0.71 Total: 28.14 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 4.38 Total: -21.11 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -3.61 Total: -96.84 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.65 Total: -29.13 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -72.69 0.44 -72.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341370039.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.111 kcal (2) G-P(sol) polarization free energy of solvation -72.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds