Wall clock time and date at job start Tue Mar 31 2020 21:00:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86800 * 119.99733 * 2 1
4 4 H 1.48496 * 109.47062 * 269.99985 * 3 2 1
5 5 H 1.48501 * 109.47147 * 30.00138 * 3 2 1
6 6 H 1.48507 * 109.46921 * 150.00034 * 3 2 1
7 7 C 1.37874 * 120.00125 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00080 * 180.02562 * 7 2 1
9 9 C 1.50705 * 120.00056 * 359.97438 * 7 2 1
10 10 C 1.53005 * 109.47256 * 179.97438 * 9 7 2
11 11 C 1.52994 * 109.46990 * 180.02562 * 10 9 7
12 12 C 1.52999 * 109.47003 * 180.02562 * 11 10 9
13 13 H 1.09001 * 109.47124 * 54.99909 * 12 11 10
14 14 N 1.46902 * 109.47167 * 295.00154 * 12 11 10
15 15 C 1.50705 * 109.47381 * 175.00198 * 12 11 10
16 16 O 1.21271 * 119.99939 * 99.99956 * 15 12 11
17 17 N 1.34780 * 119.99400 * 279.99720 * 15 12 11
18 18 C 1.46926 * 120.63278 * 0.02562 * 17 15 12
19 19 C 1.53191 * 108.89109 * 126.46534 * 18 17 15
20 20 C 1.53044 * 109.31440 * 54.56430 * 19 18 17
21 21 C 1.53040 * 109.53662 * 298.63203 * 20 19 18
22 22 H 1.08996 * 109.49892 * 301.41776 * 21 20 19
23 23 C 1.52995 * 109.49694 * 181.31470 * 21 20 19
24 24 C 1.53182 * 109.54183 * 179.82422 * 23 21 20
25 25 C 1.53110 * 109.15618 * 183.24323 * 24 23 21
26 26 O 1.42909 * 109.48405 * 57.47560 * 25 24 23
27 27 C 1.42908 * 114.09710 * 298.88299 * 26 25 24
28 28 C 1.53095 * 109.41238 * 61.16386 * 27 26 25
29 29 C 1.46957 * 120.64915 * 179.81885 * 17 15 12
30 30 H 0.96992 * 119.99866 * 0.02562 * 1 2 3
31 31 H 1.09007 * 109.46812 * 60.00508 * 9 7 2
32 32 H 1.08994 * 109.47466 * 300.00318 * 9 7 2
33 33 H 1.09007 * 109.46540 * 60.00011 * 10 9 7
34 34 H 1.08994 * 109.47161 * 300.00527 * 10 9 7
35 35 H 1.08993 * 109.47173 * 60.00223 * 11 10 9
36 36 H 1.09003 * 109.47012 * 299.99653 * 11 10 9
37 37 H 1.00900 * 111.00262 * 176.05122 * 14 12 11
38 38 H 1.00909 * 110.99389 * 299.99823 * 14 12 11
39 39 H 1.09002 * 109.58861 * 6.60537 * 18 17 15
40 40 H 1.08996 * 109.58519 * 246.32428 * 18 17 15
41 41 H 1.09003 * 109.49294 * 174.51508 * 19 18 17
42 42 H 1.08997 * 109.50161 * 294.61021 * 19 18 17
43 43 H 1.08994 * 109.45986 * 58.65006 * 20 19 18
44 44 H 1.09001 * 109.45959 * 178.62334 * 20 19 18
45 45 H 1.08994 * 109.54486 * 300.00156 * 23 21 20
46 46 H 1.09001 * 109.52004 * 303.05879 * 24 23 21
47 47 H 1.08999 * 109.52445 * 63.24968 * 24 23 21
48 48 H 1.08994 * 109.40623 * 297.49633 * 25 24 23
49 49 H 1.08993 * 109.48380 * 177.50016 * 25 24 23
50 50 H 1.09001 * 109.48155 * 301.18252 * 27 26 25
51 51 H 1.08997 * 109.48637 * 181.14843 * 27 26 25
52 52 H 1.08995 * 109.52403 * 182.48145 * 28 27 26
53 53 H 1.09001 * 109.52467 * 62.29220 * 28 27 26
54 54 H 1.09001 * 109.46843 * 113.75181 * 29 17 15
55 55 H 1.08997 * 109.71602 * 353.46674 * 29 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0464 -1.4000
5 1 1.4465 2.6527 0.7001
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0001
9 6 1.2511 -2.4992 -0.0005
10 6 2.2454 -3.6621 -0.0018
11 6 1.4804 -4.9871 -0.0025
12 6 2.4746 -6.1500 -0.0031
13 1 3.1588 -6.0435 0.8387
14 7 3.2377 -6.1412 -1.2584
15 6 1.7253 -7.4517 0.1200
16 8 1.5130 -8.1248 -0.8662
17 7 1.2911 -7.8677 1.3263
18 6 1.5403 -7.0629 2.5300
19 6 0.2087 -6.8166 3.2463
20 6 -0.4757 -8.1583 3.5179
21 6 -0.7645 -8.8635 2.1908
22 1 -1.3982 -8.2285 1.5717
23 6 -1.4780 -10.1894 2.4618
24 6 -1.7715 -10.8941 1.1337
25 6 -2.5565 -12.1794 1.4097
26 8 -3.7579 -11.8619 2.1155
27 6 -3.5423 -11.2449 3.3863
28 6 -2.7988 -9.9211 3.1897
29 6 0.5556 -9.1327 1.4624
30 1 -0.4849 0.8400 -0.0004
31 1 0.6242 -2.5567 -0.8904
32 1 0.6248 -2.5572 0.8896
33 1 2.8727 -3.6047 0.8878
34 1 2.8714 -3.6039 -0.8922
35 1 0.8534 -5.0442 -0.8922
36 1 0.8542 -5.0455 0.8878
37 1 3.9454 -6.8604 -1.2565
38 1 2.6253 -6.2386 -2.0544
39 1 1.9845 -6.1089 2.2462
40 1 2.2187 -7.5988 3.1938
41 1 0.3930 -6.3044 4.1907
42 1 -0.4343 -6.2009 2.6174
43 1 0.1783 -8.7829 4.1263
44 1 -1.4119 -7.9873 4.0494
45 1 -0.8439 -10.8252 3.0795
46 1 -2.3630 -10.2374 0.4958
47 1 -0.8331 -11.1386 0.6359
48 1 -1.9479 -12.8531 2.0127
49 1 -2.8067 -12.6624 0.4652
50 1 -2.9464 -11.9065 4.0152
51 1 -4.5025 -11.0548 3.8658
52 1 -2.5945 -9.4703 4.1608
53 1 -3.4117 -9.2441 2.5945
54 1 1.1526 -9.8399 2.0381
55 1 0.3503 -9.5467 0.4752
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001341370039.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:00:24
Heat of formation + Delta-G solvation = -141.362623 kcal
Electronic energy + Delta-G solvation = -30747.693034 eV
Core-core repulsion = 26781.745405 eV
Total energy + Delta-G solvation = -3965.947629 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.25 seconds
Orbital eigenvalues (eV)
-41.69063 -40.48296 -38.68613 -37.21787 -35.83321 -35.23266 -33.35041 -33.13858
-32.05954 -31.34961 -29.58591 -27.49004 -26.32972 -25.81561 -24.49170 -23.64452
-23.14922 -21.73933 -21.50870 -20.96256 -19.84661 -18.54770 -18.42591 -17.34792
-17.17473 -16.96130 -16.79316 -16.48035 -16.25957 -16.05275 -15.67894 -15.44417
-15.17408 -14.95804 -14.80434 -14.59022 -14.35362 -14.28918 -14.11551 -13.95738
-13.59090 -13.29799 -13.17987 -13.07452 -12.83665 -12.64220 -12.50595 -12.36536
-12.30093 -12.18005 -12.07113 -11.96725 -11.73502 -11.63083 -11.42931 -11.35528
-11.24011 -11.18229 -11.07341 -10.94945 -10.52235 -10.43377 -9.70810 -9.66808
-8.17000 -6.27478 1.41260 1.42912 1.43782 1.54044 1.96393 2.43440
2.98146 3.16122 3.36027 3.52303 3.58166 3.65656 3.76757 3.93273
3.99839 4.04887 4.05723 4.06342 4.12988 4.20955 4.30256 4.34287
4.44810 4.47923 4.51215 4.59038 4.62159 4.64556 4.74422 4.78247
4.81171 4.85396 4.88706 4.89896 4.92850 5.00467 5.09267 5.11493
5.13361 5.15348 5.24474 5.31747 5.33220 5.36170 5.49204 5.51968
5.60436 5.83102 5.93003 6.00500 6.28094 6.30040 6.30377 6.44658
6.90247 7.03048 7.41623 8.94871
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.015245 B = 0.002278 C = 0.002123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1836.275288 B =12286.417248 C =13183.601948
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.003 4.003
3 Si 0.963 3.037
4 H -0.275 1.275
5 H -0.282 1.282
6 H -0.260 1.260
7 C -0.537 4.537
8 H 0.061 0.939
9 C 0.023 3.977
10 C -0.082 4.082
11 C -0.092 4.092
12 C 0.086 3.914
13 H 0.122 0.878
14 N -0.817 5.817
15 C 0.482 3.518
16 O -0.586 6.586
17 N -0.604 5.604
18 C 0.096 3.904
19 C -0.138 4.138
20 C -0.110 4.110
21 C -0.088 4.088
22 H 0.047 0.953
23 C -0.073 4.073
24 C -0.154 4.154
25 C 0.060 3.940
26 O -0.410 6.410
27 C 0.056 3.944
28 C -0.148 4.148
29 C 0.112 3.888
30 H 0.262 0.738
31 H -0.019 1.019
32 H -0.007 1.007
33 H 0.058 0.942
34 H 0.056 0.944
35 H 0.041 0.959
36 H 0.070 0.930
37 H 0.349 0.651
38 H 0.344 0.656
39 H 0.088 0.912
40 H 0.097 0.903
41 H 0.096 0.904
42 H 0.046 0.954
43 H 0.085 0.915
44 H 0.077 0.923
45 H 0.092 0.908
46 H 0.049 0.951
47 H 0.078 0.922
48 H 0.065 0.935
49 H 0.095 0.905
50 H 0.065 0.935
51 H 0.100 0.900
52 H 0.094 0.906
53 H 0.053 0.947
54 H 0.085 0.915
55 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.388 -26.222 11.994 28.837
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.577 5.577
2 C -0.201 4.201
3 Si 0.788 3.212
4 H -0.201 1.201
5 H -0.208 1.208
6 H -0.184 1.184
7 C -0.575 4.575
8 H 0.079 0.921
9 C -0.014 4.014
10 C -0.120 4.120
11 C -0.131 4.131
12 C -0.029 4.029
13 H 0.139 0.861
14 N -0.346 5.346
15 C 0.269 3.731
16 O -0.467 6.467
17 N -0.336 5.336
18 C -0.026 4.026
19 C -0.176 4.176
20 C -0.147 4.147
21 C -0.107 4.107
22 H 0.065 0.935
23 C -0.092 4.092
24 C -0.191 4.191
25 C -0.016 4.016
26 O -0.329 6.329
27 C -0.020 4.020
28 C -0.186 4.186
29 C -0.010 4.010
30 H 0.071 0.929
31 H -0.001 1.001
32 H 0.011 0.989
33 H 0.076 0.924
34 H 0.074 0.926
35 H 0.060 0.940
36 H 0.088 0.912
37 H 0.162 0.838
38 H 0.158 0.842
39 H 0.107 0.893
40 H 0.115 0.885
41 H 0.115 0.885
42 H 0.064 0.936
43 H 0.103 0.897
44 H 0.095 0.905
45 H 0.110 0.890
46 H 0.068 0.932
47 H 0.096 0.904
48 H 0.084 0.916
49 H 0.113 0.887
50 H 0.083 0.917
51 H 0.118 0.882
52 H 0.112 0.888
53 H 0.072 0.928
54 H 0.103 0.897
55 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -0.574 -25.756 11.623 28.263
hybrid contribution -0.336 0.302 -0.610 0.759
sum -0.910 -25.454 11.013 27.749
Atomic orbital electron populations
1.70106 1.07830 1.27626 1.52100 1.25995 0.95750 1.03383 0.94929
0.85470 0.78810 0.78533 0.78384 1.20098 1.20772 1.18446 1.21720
0.93580 0.92357 1.49886 0.92103 1.19037 0.94507 0.93492 0.94343
1.21274 0.97497 0.91863 1.01330 1.21460 0.96691 0.93534 1.01381
1.21632 0.95480 0.89831 0.95973 0.86068 1.59068 1.17558 1.54851
1.03138 1.22452 0.79279 0.88634 0.82686 1.90632 1.59538 1.58558
1.37952 1.48311 1.54868 1.22882 1.07512 1.22092 0.98413 0.96294
0.85826 1.21941 0.95989 0.98255 1.01392 1.21613 1.01608 0.95525
0.95939 1.21446 0.95100 0.96810 0.97372 0.93462 1.21129 0.96434
0.95384 0.96271 1.22286 1.00911 0.97932 0.98009 1.22656 0.86166
0.95535 0.97263 1.87912 1.31524 1.80371 1.33120 1.22740 1.01566
0.92999 0.84687 1.22265 0.96061 0.98291 1.01977 1.21741 0.92568
0.85327 1.01353 0.92908 1.00074 0.98902 0.92355 0.92553 0.94034
0.91186 0.83760 0.84214 0.89334 0.88518 0.88526 0.93552 0.89683
0.90456 0.89006 0.93164 0.90375 0.91630 0.88698 0.91673 0.88234
0.88755 0.92814 0.89677 0.91174
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.78 13.29 21.45 0.28 -57.49 16
2 C 0.00 -0.20 5.46 84.65 0.46 0.27 16
3 Si 0.96 44.66 29.54 68.60 2.03 46.68 16
4 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16
5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16
6 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16
7 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16
8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16
9 C 0.02 1.24 4.97 29.85 0.15 1.39 16
10 C -0.08 -3.33 5.04 30.59 0.15 -3.18 16
11 C -0.09 -3.11 4.51 30.59 0.14 -2.97 16
12 C 0.09 2.34 2.29 44.17 0.10 2.44 16
13 H 0.12 2.77 6.80 -2.39 -0.02 2.76 16
14 N -0.82 -22.45 8.44 -171.79 -1.45 -23.90 16
15 C 0.48 13.38 6.94 87.66 0.61 13.99 16
16 O -0.59 -20.03 15.67 -3.00 -0.05 -20.07 16
17 N -0.60 -13.00 2.98 -818.90 -2.44 -15.44 16
18 C 0.10 1.59 5.75 86.36 0.50 2.08 16
19 C -0.14 -2.19 6.08 30.67 0.19 -2.00 16
20 C -0.11 -1.37 4.86 30.62 0.15 -1.23 16
21 C -0.09 -1.41 1.93 -10.73 -0.02 -1.43 16
22 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16
23 C -0.07 -0.94 1.86 -10.67 -0.02 -0.96 16
24 C -0.15 -2.38 4.99 30.69 0.15 -2.22 16
25 C 0.06 0.86 6.84 72.02 0.49 1.35 16
26 O -0.41 -7.46 10.77 -148.98 -1.60 -9.06 16
27 C 0.06 0.71 6.84 72.01 0.49 1.20 16
28 C -0.15 -1.86 4.98 30.69 0.15 -1.71 16
29 C 0.11 2.10 5.19 86.34 0.45 2.55 16
30 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16
31 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16
32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16
33 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16
34 H 0.06 2.37 7.75 -2.39 -0.02 2.35 16
35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16
36 H 0.07 2.25 6.96 -2.39 -0.02 2.23 16
37 H 0.35 8.14 9.06 -89.69 -0.81 7.33 16
38 H 0.34 10.20 8.58 -89.69 -0.77 9.43 16
39 H 0.09 1.62 4.83 -2.39 -0.01 1.61 16
40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16
41 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16
42 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16
43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16
44 H 0.08 0.89 6.45 -2.39 -0.02 0.87 16
45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16
46 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
47 H 0.08 1.16 6.76 -2.39 -0.02 1.15 16
48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16
49 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16
50 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
51 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16
52 H 0.09 0.86 6.60 -2.39 -0.02 0.85 16
53 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16
54 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16
55 H 0.07 1.64 5.71 -2.39 -0.01 1.63 16
Total: -1.00 -72.69 413.62 0.44 -72.25
By element:
Atomic # 1 Polarization: 28.85 SS G_CDS: -0.71 Total: 28.14 kcal
Atomic # 6 Polarization: -25.49 SS G_CDS: 4.38 Total: -21.11 kcal
Atomic # 7 Polarization: -93.23 SS G_CDS: -3.61 Total: -96.84 kcal
Atomic # 8 Polarization: -27.48 SS G_CDS: -1.65 Total: -29.13 kcal
Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal
Total: -72.69 0.44 -72.25 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001341370039.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.111 kcal
(2) G-P(sol) polarization free energy of solvation -72.689 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.800 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.251 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.363 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.25 seconds