Wall clock time and date at job start Tue Mar 31 2020 21:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47146 * 54.99480 * 11 10 9 13 13 N 1.46901 * 109.46958 * 295.00177 * 11 10 9 14 14 C 1.50697 * 109.47301 * 175.00426 * 11 10 9 15 15 O 1.21279 * 120.00334 * 99.99842 * 14 11 10 16 16 N 1.34779 * 119.99775 * 279.99751 * 14 11 10 17 17 C 1.47610 * 118.64436 * 0.02562 * 16 14 11 18 18 C 1.53946 * 112.14280 * 137.86287 * 17 16 14 19 19 C 1.50876 * 110.09750 * 319.44032 * 18 17 16 20 20 C 1.52567 * 109.35565 * 91.88415 * 19 18 17 21 21 C 1.47092 * 114.32931 * 274.98117 * 20 19 18 22 22 H 1.08996 * 109.32894 * 302.71830 * 21 20 19 23 23 C 1.52996 * 109.33097 * 183.06303 * 21 20 19 24 24 C 1.53176 * 109.54700 * 179.55702 * 23 21 20 25 25 C 1.53087 * 109.16650 * 183.15465 * 24 23 21 26 26 O 1.42905 * 109.41523 * 57.60901 * 25 24 23 27 27 C 1.42906 * 114.09606 * 298.84180 * 26 25 24 28 28 C 1.53093 * 109.41540 * 61.16014 * 27 26 25 29 29 C 1.44570 * 118.64385 * 179.73401 * 16 14 11 30 30 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 32 32 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 33 33 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 34 34 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 35 35 H 1.00900 * 111.00110 * 300.00150 * 13 11 10 36 36 H 1.00905 * 111.00268 * 63.95266 * 13 11 10 37 37 H 1.09000 * 108.94649 * 258.55587 * 17 16 14 38 38 H 1.09007 * 108.94317 * 17.27163 * 17 16 14 39 39 H 1.09001 * 109.36031 * 79.63489 * 18 17 16 40 40 H 1.09003 * 109.36642 * 199.24427 * 18 17 16 41 41 H 1.09001 * 109.49079 * 211.84895 * 19 18 17 42 42 H 1.09004 * 109.49256 * 331.91975 * 19 18 17 43 43 H 1.09000 * 108.51041 * 36.23229 * 20 19 18 44 44 H 1.08996 * 108.51648 * 153.72655 * 20 19 18 45 45 H 1.09002 * 109.54420 * 299.82298 * 23 21 20 46 46 H 1.09010 * 109.52037 * 303.06123 * 24 23 21 47 47 H 1.09001 * 109.52375 * 63.24657 * 24 23 21 48 48 H 1.08997 * 109.48248 * 297.62538 * 25 24 23 49 49 H 1.09005 * 109.49202 * 177.59239 * 25 24 23 50 50 H 1.08999 * 109.47964 * 301.17901 * 27 26 25 51 51 H 1.08994 * 109.49205 * 181.14583 * 27 26 25 52 52 H 1.08997 * 109.52384 * 182.48872 * 28 27 26 53 53 H 1.08998 * 109.52386 * 62.29286 * 28 27 26 54 54 H 1.09000 * 109.45108 * 30.76395 * 29 16 14 55 55 H 1.08998 * 109.44915 * 150.68388 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0046 12 1 0.7884 -5.0060 -0.8466 13 7 0.7281 -5.1200 1.2502 14 6 2.4549 -6.1297 -0.1293 15 8 2.7864 -6.7544 0.8560 16 7 2.9583 -6.4574 -1.3359 17 6 2.5348 -5.6767 -2.5150 18 6 3.7117 -5.3631 -3.4565 19 6 4.9362 -5.0010 -2.6528 20 6 5.7622 -6.2577 -2.3957 21 6 5.3341 -7.0346 -1.2223 22 1 5.3651 -6.3987 -0.3377 23 6 6.2811 -8.2204 -1.0271 24 6 5.8462 -9.0268 0.2004 25 6 6.8441 -10.1640 0.4340 26 8 8.1548 -9.6193 0.5998 27 6 8.6333 -8.8946 -0.5351 28 6 7.7073 -7.7063 -0.8076 29 6 3.8955 -7.5548 -1.4210 30 1 -0.4849 0.8400 0.0004 31 1 0.6240 -2.5575 0.8880 32 1 0.6247 -2.5562 -0.8920 33 1 2.8720 -3.6035 -0.8927 34 1 2.8719 -3.6051 0.8873 35 1 1.3476 -5.1051 2.0465 36 1 0.0233 -4.4020 1.3271 37 1 1.7837 -6.2445 -3.0641 38 1 2.0929 -4.7388 -2.1783 39 1 3.9273 -6.2384 -4.0693 40 1 3.4441 -4.5280 -4.1038 41 1 5.5353 -4.2793 -3.2082 42 1 4.6311 -4.5653 -1.7014 43 1 5.7012 -6.8979 -3.2757 44 1 6.8029 -5.9653 -2.2562 45 1 6.2550 -8.8572 -1.9113 46 1 5.8243 -8.3761 1.0747 47 1 4.8533 -9.4428 0.0299 48 1 6.8359 -10.8367 -0.4236 49 1 6.5636 -10.7155 1.3314 50 1 8.6484 -9.5507 -1.4054 51 1 9.6416 -8.5315 -0.3361 52 1 8.0453 -7.1781 -1.6991 53 1 7.7230 -7.0290 0.0462 54 1 3.6693 -8.2864 -0.6453 55 1 3.8133 -8.0272 -2.3999 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349895146.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:07 Heat of formation + Delta-G solvation = -128.948102 kcal Electronic energy + Delta-G solvation = -31854.450107 eV Core-core repulsion = 27889.040812 eV Total energy + Delta-G solvation = -3965.409295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.83290 -40.44982 -38.74767 -37.19297 -36.15600 -34.85374 -34.44994 -32.13656 -32.06664 -31.71515 -28.95984 -27.79122 -26.89524 -25.49616 -24.72715 -24.09492 -22.66389 -21.88350 -21.24335 -20.98245 -19.72931 -18.89253 -18.25366 -17.50944 -17.11698 -16.89662 -16.59494 -16.50813 -16.12572 -15.78096 -15.71409 -15.44831 -15.21524 -14.91747 -14.76536 -14.74019 -14.43582 -14.22746 -14.08968 -13.89164 -13.48837 -13.44198 -13.22651 -13.08940 -12.96862 -12.71404 -12.52089 -12.42120 -12.26208 -12.15917 -11.96301 -11.85048 -11.74081 -11.69702 -11.47046 -11.36764 -11.29039 -11.18966 -10.98799 -10.65784 -10.57246 -10.40006 -9.69376 -9.52484 -8.22889 -6.33091 1.36858 1.38824 1.50243 1.60189 2.02737 2.38399 2.99491 3.10811 3.43497 3.55499 3.63485 3.72633 3.84732 3.91242 4.01458 4.06293 4.08166 4.12786 4.20807 4.21938 4.31479 4.36278 4.39601 4.49282 4.53921 4.58443 4.61576 4.71961 4.73242 4.79667 4.81176 4.85224 4.88084 4.91403 4.95204 5.05096 5.06320 5.14031 5.18562 5.20049 5.25981 5.30282 5.41965 5.45873 5.46973 5.53882 5.62280 5.76045 5.79736 6.03296 6.19485 6.29635 6.35241 6.43813 6.81790 7.21169 7.36062 8.88086 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014054 B = 0.002865 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.817931 B = 9770.548087 C =10205.368118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.052 0.948 9 C 0.034 3.966 10 C -0.118 4.118 11 C 0.078 3.922 12 H 0.106 0.894 13 N -0.830 5.830 14 C 0.519 3.481 15 O -0.569 6.569 16 N -0.596 5.596 17 C 0.091 3.909 18 C -0.122 4.122 19 C -0.121 4.121 20 C -0.110 4.110 21 C -0.085 4.085 22 H 0.032 0.968 23 C -0.073 4.073 24 C -0.149 4.149 25 C 0.061 3.939 26 O -0.410 6.410 27 C 0.058 3.942 28 C -0.149 4.149 29 C 0.117 3.883 30 H 0.264 0.736 31 H 0.000 1.000 32 H 0.004 0.996 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.342 0.658 36 H 0.352 0.648 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.040 0.960 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.093 0.907 50 H 0.068 0.932 51 H 0.099 0.901 52 H 0.093 0.907 53 H 0.046 0.954 54 H 0.070 0.930 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.355 -19.011 -10.399 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.070 0.930 9 C -0.004 4.004 10 C -0.158 4.158 11 C -0.037 4.037 12 H 0.123 0.877 13 N -0.361 5.361 14 C 0.307 3.693 15 O -0.447 6.447 16 N -0.327 5.327 17 C -0.030 4.030 18 C -0.160 4.160 19 C -0.159 4.159 20 C -0.147 4.147 21 C -0.105 4.105 22 H 0.051 0.949 23 C -0.091 4.091 24 C -0.186 4.186 25 C -0.015 4.015 26 O -0.330 6.330 27 C -0.018 4.018 28 C -0.187 4.187 29 C -0.005 4.005 30 H 0.073 0.927 31 H 0.018 0.982 32 H 0.022 0.978 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.155 0.845 36 H 0.166 0.834 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.114 0.886 46 H 0.059 0.941 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.111 0.889 50 H 0.087 0.913 51 H 0.117 0.883 52 H 0.112 0.888 53 H 0.065 0.935 54 H 0.088 0.912 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.256 -19.989 -10.039 26.001 hybrid contribution 0.165 2.451 0.626 2.536 sum 13.421 -17.538 -9.413 24.006 Atomic orbital electron populations 1.70062 1.07433 1.27703 1.51344 1.25829 0.95701 1.02842 0.94726 0.85522 0.79010 0.79408 0.77872 1.19105 1.20035 1.20645 1.21594 0.93188 0.92393 1.50825 0.92971 1.18937 0.93874 0.91883 0.95662 1.22150 0.98752 0.93852 1.01001 1.21465 0.94917 0.91759 0.95558 0.87662 1.58782 1.18367 1.55551 1.03389 1.20762 0.81151 0.84181 0.83166 1.90604 1.61833 1.54273 1.38034 1.47667 1.44385 1.33594 1.07102 1.22351 0.98168 0.96138 0.86364 1.21731 0.93693 1.03269 0.97296 1.21090 0.97144 0.98037 0.99625 1.20538 0.99787 0.96242 0.98171 1.20567 0.94790 0.96782 0.98326 0.94920 1.21134 0.93864 0.95838 0.98303 1.22237 0.99902 0.98232 0.98260 1.22668 0.81613 0.94483 1.02745 1.87902 1.32656 1.71634 1.40789 1.22729 0.97720 0.92465 0.88912 1.22289 0.95275 0.98620 1.02499 1.21529 0.87357 0.88341 1.03294 0.92699 0.98171 0.97800 0.91472 0.94491 0.84523 0.83369 0.89561 0.90672 0.89167 0.89702 0.91106 0.94652 0.89853 0.91702 0.88588 0.94071 0.90353 0.91225 0.88854 0.91349 0.88262 0.88819 0.93485 0.91182 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 13.29 21.45 0.28 -53.76 16 2 C 0.01 0.42 5.46 84.66 0.46 0.89 16 3 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 9 C 0.03 1.65 4.74 29.85 0.14 1.80 16 10 C -0.12 -4.72 4.38 30.60 0.13 -4.59 16 11 C 0.08 2.74 2.34 44.17 0.10 2.84 16 12 H 0.11 3.46 6.90 -2.39 -0.02 3.45 16 13 N -0.83 -29.98 8.94 -171.80 -1.54 -31.52 16 14 C 0.52 17.56 6.87 87.66 0.60 18.16 16 15 O -0.57 -22.65 15.68 -3.03 -0.05 -22.70 16 16 N -0.60 -15.27 2.25 -819.40 -1.85 -17.11 16 17 C 0.09 1.95 5.47 86.49 0.47 2.42 16 18 C -0.12 -2.05 5.71 30.22 0.17 -1.88 16 19 C -0.12 -2.45 5.51 29.76 0.16 -2.29 16 20 C -0.11 -1.84 4.23 28.61 0.12 -1.71 16 21 C -0.08 -1.73 1.68 -12.20 -0.02 -1.75 16 22 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 23 C -0.07 -1.20 1.84 -10.67 -0.02 -1.22 16 24 C -0.15 -2.96 4.99 30.68 0.15 -2.81 16 25 C 0.06 1.06 6.84 72.01 0.49 1.55 16 26 O -0.41 -8.62 10.77 -148.98 -1.60 -10.22 16 27 C 0.06 0.88 6.84 72.01 0.49 1.37 16 28 C -0.15 -2.42 4.92 30.69 0.15 -2.27 16 29 C 0.12 2.50 4.55 87.17 0.40 2.90 16 30 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.00 0.00 6.87 -2.39 -0.02 -0.02 16 32 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.07 2.57 5.77 -2.39 -0.01 2.55 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.34 12.72 8.58 -89.69 -0.77 11.95 16 36 H 0.35 12.76 7.55 -89.69 -0.68 12.09 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.95 4.40 -2.38 -0.01 1.94 16 39 H 0.09 1.08 7.32 -2.39 -0.02 1.07 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.03 0.97 6.58 -2.39 -0.02 0.95 16 43 H 0.08 1.00 7.36 -2.39 -0.02 0.98 16 44 H 0.06 1.04 6.07 -2.39 -0.01 1.02 16 45 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.08 1.52 6.36 -2.39 -0.02 1.50 16 48 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 50 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 51 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.09 1.18 6.51 -2.39 -0.02 1.16 16 53 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 54 H 0.07 1.75 5.10 -2.39 -0.01 1.73 16 55 H 0.10 1.53 8.06 -2.39 -0.02 1.51 16 Total: -1.00 -68.39 402.58 0.98 -67.41 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: -0.56 Total: 38.72 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 4.25 Total: -16.17 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -3.10 Total: -102.39 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.65 Total: -32.92 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -68.39 0.98 -67.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349895146.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.538 kcal (2) G-P(sol) polarization free energy of solvation -68.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds