Wall clock time and date at job start Tue Mar 31 2020 21:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99819 * 2 1 4 4 H 1.48503 * 109.47567 * 269.99955 * 3 2 1 5 5 H 1.48500 * 109.47327 * 30.00579 * 3 2 1 6 6 H 1.48503 * 109.47122 * 150.00181 * 3 2 1 7 7 C 1.37877 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00410 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99562 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47034 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47413 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47244 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99847 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99885 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99888 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47247 * 179.97438 * 15 14 12 17 17 C 1.53119 * 109.52436 * 184.99684 * 16 15 14 18 18 C 1.53039 * 109.27944 * 182.44119 * 17 16 15 19 19 N 1.46841 * 109.52503 * 59.17681 * 18 17 16 20 20 C 1.46900 * 111.00387 * 174.16027 * 19 18 17 21 21 C 1.53177 * 109.54112 * 60.43363 * 20 19 18 22 22 C 1.53092 * 109.16443 * 176.83653 * 21 20 19 23 23 O 1.42905 * 109.42428 * 302.41109 * 22 21 20 24 24 C 1.42901 * 114.09770 * 61.14988 * 23 22 21 25 25 C 1.53095 * 109.41489 * 298.84274 * 24 23 22 26 26 C 1.46849 * 111.19938 * 298.26297 * 19 18 17 27 27 C 1.53035 * 109.52398 * 61.73863 * 26 19 18 28 28 H 0.96996 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47696 * 60.00234 * 9 7 2 30 30 H 1.09007 * 109.47225 * 300.00133 * 9 7 2 31 31 H 1.09004 * 109.47202 * 59.99425 * 10 9 7 32 32 H 1.08997 * 109.47467 * 299.99877 * 10 9 7 33 33 H 1.08996 * 109.47018 * 59.99559 * 11 10 9 34 34 H 1.08997 * 109.47100 * 299.99944 * 11 10 9 35 35 H 0.96997 * 120.00409 * 359.97438 * 14 12 11 36 36 H 1.09004 * 109.47425 * 59.99457 * 15 14 12 37 37 H 1.09007 * 109.46899 * 299.99900 * 15 14 12 38 38 H 1.08997 * 109.57067 * 305.15648 * 16 15 14 39 39 H 1.08996 * 109.50207 * 62.49955 * 17 16 15 40 40 H 1.08998 * 109.53461 * 302.40183 * 17 16 15 41 41 H 1.09006 * 109.46094 * 299.16299 * 18 17 16 42 42 H 1.09001 * 109.45272 * 179.19248 * 18 17 16 43 43 H 1.08999 * 109.54362 * 300.18469 * 20 19 18 44 44 H 1.09004 * 109.51365 * 56.93970 * 21 20 19 45 45 H 1.08998 * 109.53811 * 296.75414 * 21 20 19 46 46 H 1.09002 * 109.48343 * 182.42096 * 22 21 20 47 47 H 1.08999 * 109.47546 * 62.39689 * 22 21 20 48 48 H 1.09002 * 109.48282 * 58.82206 * 24 23 22 49 49 H 1.08997 * 109.48587 * 178.84728 * 24 23 22 50 50 H 1.09001 * 109.52141 * 177.51212 * 25 24 23 51 51 H 1.09003 * 109.52166 * 297.70284 * 25 24 23 52 52 H 1.09005 * 109.46282 * 181.75513 * 26 19 18 53 53 H 1.08999 * 109.45980 * 301.71887 * 26 19 18 54 54 H 1.09002 * 109.50409 * 180.87827 * 27 26 19 55 55 H 1.09001 * 109.50449 * 60.76118 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4596 -6.1325 -0.0005 13 8 3.6520 -5.9108 -0.0009 14 7 2.0104 -7.4032 -0.0006 15 6 2.9624 -8.5167 -0.0007 16 6 2.1974 -9.8417 -0.0002 17 6 3.1867 -11.0037 0.1255 18 6 2.4215 -12.3276 0.0642 19 7 1.6944 -12.4158 -1.2085 20 6 1.0602 -13.7318 -1.3625 21 6 0.0628 -13.9566 -0.2219 22 6 -0.6500 -15.2947 -0.4339 23 8 -1.2988 -15.2910 -1.7072 24 6 -0.4097 -15.1321 -2.8146 25 6 0.3126 -13.7872 -2.6983 26 6 0.7053 -11.3373 -1.3308 27 6 1.4192 -9.9839 -1.3111 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6044 -0.8905 33 1 0.8533 -5.0451 -0.8896 34 1 0.8540 -5.0446 0.8903 35 1 1.0567 -7.5805 0.0001 36 1 3.5891 -8.4590 0.8893 37 1 3.5891 -8.4589 -0.8907 38 1 1.5030 -9.8621 0.8397 39 1 3.7137 -10.9317 1.0769 40 1 3.9054 -10.9605 -0.6928 41 1 1.7132 -12.3763 0.8913 42 1 3.1247 -13.1571 0.1390 43 1 1.8236 -14.5095 -1.3394 44 1 -0.6706 -13.1502 -0.2153 45 1 0.5948 -13.9739 0.7293 46 1 -1.3917 -15.4400 0.3516 47 1 0.0791 -16.1043 -0.3997 48 1 0.3227 -15.9394 -2.8116 49 1 -0.9781 -15.1604 -3.7442 50 1 1.0234 -13.6835 -3.5181 51 1 -0.4159 -12.9775 -2.7419 52 1 0.1617 -11.4476 -2.2692 53 1 0.0049 -11.3907 -0.4973 54 1 0.6834 -9.1831 -1.3862 55 1 2.1097 -9.9244 -2.1525 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351058795.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:33 Heat of formation + Delta-G solvation = -134.724507 kcal Electronic energy + Delta-G solvation = -29313.250932 eV Core-core repulsion = 25347.591153 eV Total energy + Delta-G solvation = -3965.659779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.29167 -40.69753 -39.28184 -36.90765 -36.08046 -34.68225 -33.99652 -32.34323 -31.92222 -31.63140 -29.91163 -27.88897 -25.81174 -24.90766 -24.72018 -23.99859 -22.95080 -22.13539 -21.46631 -20.92950 -20.04109 -18.62115 -17.87655 -17.56648 -17.05132 -16.92513 -16.83386 -16.49408 -16.38134 -16.08509 -15.73330 -15.48624 -15.24502 -15.02096 -14.93416 -14.69380 -14.35596 -14.22644 -14.11028 -13.72077 -13.66628 -13.40632 -13.17460 -13.03610 -12.84244 -12.59856 -12.51124 -12.48609 -12.39934 -12.24099 -12.02884 -11.84604 -11.62943 -11.55347 -11.47116 -11.46222 -11.37976 -11.25826 -10.98647 -10.72432 -10.57664 -10.54084 -10.06469 -9.17501 -8.20057 -6.30020 1.39690 1.40814 1.52391 1.67771 2.24653 2.42495 2.85092 2.99623 3.12790 3.63342 3.69290 3.78328 3.83055 3.89014 3.95720 4.02178 4.17341 4.23125 4.23835 4.27354 4.30832 4.31793 4.39812 4.47789 4.53246 4.59520 4.64072 4.69660 4.74300 4.78372 4.80913 4.85946 4.89221 4.91721 4.92326 4.98111 5.03393 5.08399 5.11634 5.11900 5.19597 5.22496 5.24191 5.30629 5.42039 5.51482 5.55921 5.75853 5.87184 6.14583 6.17469 6.26400 6.27853 6.57764 6.85297 7.29928 7.38612 8.91352 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025963 B = 0.001510 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.180154 B =18544.735011 C =19157.274292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.025 3.975 10 C -0.083 4.083 11 C -0.131 4.131 12 C 0.514 3.486 13 O -0.587 6.587 14 N -0.717 5.717 15 C 0.127 3.873 16 C -0.087 4.087 17 C -0.107 4.107 18 C 0.058 3.942 19 N -0.537 5.537 20 C 0.086 3.914 21 C -0.184 4.184 22 C 0.062 3.938 23 O -0.407 6.407 24 C 0.059 3.941 25 C -0.148 4.148 26 C 0.053 3.947 27 C -0.110 4.110 28 H 0.264 0.736 29 H 0.002 0.998 30 H 0.002 0.998 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.415 0.585 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.102 0.898 50 H 0.084 0.916 51 H 0.067 0.933 52 H 0.079 0.921 53 H 0.037 0.963 54 H 0.073 0.927 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 -37.652 -1.799 37.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.012 4.012 10 C -0.121 4.121 11 C -0.171 4.171 12 C 0.302 3.698 13 O -0.467 6.467 14 N -0.370 5.370 15 C 0.003 3.997 16 C -0.106 4.106 17 C -0.145 4.145 18 C -0.069 4.069 19 N -0.260 5.260 20 C -0.023 4.023 21 C -0.223 4.223 22 C -0.015 4.015 23 O -0.326 6.326 24 C -0.018 4.018 25 C -0.186 4.186 26 C -0.074 4.074 27 C -0.148 4.148 28 H 0.073 0.927 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.252 0.748 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.121 0.879 50 H 0.103 0.897 51 H 0.086 0.914 52 H 0.098 0.902 53 H 0.055 0.945 54 H 0.092 0.908 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.446 -37.358 -2.199 37.425 hybrid contribution -0.334 1.075 0.671 1.310 sum -0.781 -36.283 -1.528 36.324 Atomic orbital electron populations 1.70065 1.07466 1.27769 1.51556 1.25905 0.95842 1.03050 0.94675 0.85494 0.78614 0.78689 0.78540 1.19717 1.20257 1.19326 1.21699 0.93342 0.92858 1.50772 0.93109 1.19034 0.94228 0.92388 0.95582 1.21158 0.97625 0.93097 1.00203 1.21679 0.97942 0.91727 1.05711 1.21054 0.89315 0.84958 0.74439 1.90663 1.19154 1.85582 1.51340 1.45927 1.11246 1.04710 1.75159 1.21378 0.91862 0.85178 1.01279 1.21355 0.97673 0.92572 0.98997 1.21540 0.97501 0.92716 1.02751 1.22068 0.97041 0.98041 0.89786 1.62173 1.27333 1.02205 1.34317 1.21765 0.94852 0.91387 0.94267 1.22837 0.99794 0.99158 1.00547 1.22610 0.97475 0.96015 0.85399 1.87923 1.35582 1.93844 1.15259 1.22697 0.93453 0.95907 0.89699 1.22307 0.99837 0.98653 0.97796 1.22148 0.93353 0.90610 1.01336 1.21642 0.99453 0.96581 0.97111 0.92671 0.98002 0.98002 0.94206 0.94197 0.87398 0.87389 0.74836 0.92539 0.92855 0.89866 0.90393 0.91489 0.94125 0.89930 0.89424 0.91821 0.89984 0.88433 0.92084 0.92080 0.87949 0.89743 0.91398 0.90231 0.94485 0.90819 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.55 -32.63 9.11 25.60 0.23 -32.39 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.02 1.33 4.97 29.85 0.15 1.47 16 10 C -0.08 -3.69 4.44 30.59 0.14 -3.55 16 11 C -0.13 -4.25 5.70 29.85 0.17 -4.08 16 12 C 0.51 16.32 7.83 87.66 0.69 17.01 16 13 O -0.59 -24.23 15.98 -3.03 -0.05 -24.28 16 14 N -0.72 -15.54 5.31 -463.05 -2.46 -18.00 16 15 C 0.13 2.49 5.07 86.38 0.44 2.92 16 16 C -0.09 -1.13 2.29 -10.71 -0.02 -1.15 16 17 C -0.11 -1.25 5.38 30.65 0.16 -1.08 16 18 C 0.06 0.59 4.91 86.33 0.42 1.01 16 19 N -0.54 -6.12 4.68 -870.43 -4.08 -10.19 16 20 C 0.09 0.83 2.38 45.03 0.11 0.94 16 21 C -0.18 -1.69 4.71 30.68 0.14 -1.55 16 22 C 0.06 0.59 6.84 72.01 0.49 1.08 16 23 O -0.41 -5.68 10.77 -148.98 -1.60 -7.28 16 24 C 0.06 0.56 6.84 72.01 0.49 1.06 16 25 C -0.15 -1.45 5.16 30.68 0.16 -1.29 16 26 C 0.05 0.63 4.68 86.32 0.40 1.03 16 27 C -0.11 -1.42 5.22 30.64 0.16 -1.26 16 28 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 31 H 0.04 1.86 8.10 -2.38 -0.02 1.84 16 32 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 33 H 0.11 3.08 8.14 -2.39 -0.02 3.07 16 34 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.41 6.34 7.69 -92.71 -0.71 5.63 16 36 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.04 0.39 6.72 -2.38 -0.02 0.37 16 42 H 0.08 0.73 8.12 -2.39 -0.02 0.71 16 43 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 0.75 6.48 -2.38 -0.02 0.73 16 45 H 0.08 0.64 6.74 -2.39 -0.02 0.62 16 46 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.07 0.79 6.06 -2.39 -0.01 0.77 16 52 H 0.08 0.96 5.84 -2.38 -0.01 0.95 16 53 H 0.04 0.44 6.64 -2.39 -0.02 0.42 16 54 H 0.07 0.88 7.27 -2.39 -0.02 0.86 16 55 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -73.78 415.97 -0.94 -74.72 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.14 Total: 12.99 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 4.80 Total: -19.19 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -6.25 Total: -84.49 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.65 Total: -31.56 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -73.78 -0.94 -74.72 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351058795.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.002 kcal (2) G-P(sol) polarization free energy of solvation -73.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds