Wall clock time and date at job start Tue Mar 31 2020 21:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.36571 * 2 1 4 4 C 1.50884 * 109.36419 * 240.38231 * 2 1 3 5 5 C 1.52562 * 109.35807 * 331.69368 * 4 2 1 6 6 H 1.09004 * 108.39230 * 36.14998 * 5 4 2 7 7 N 1.46502 * 108.51332 * 153.73884 * 5 4 2 8 8 C 1.34776 * 119.99928 * 209.76406 * 7 5 4 9 9 O 1.21288 * 120.00181 * 359.72369 * 8 7 5 10 10 C 1.50697 * 120.00220 * 179.97438 * 8 7 5 11 11 C 1.52994 * 109.47357 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47251 * 180.02562 * 11 10 8 13 13 H 1.09010 * 109.87046 * 54.30066 * 12 11 10 14 14 C 1.54100 * 109.88306 * 175.30785 * 12 11 10 15 15 C 1.54804 * 104.19044 * 121.45480 * 14 12 11 16 16 C 1.54994 * 102.09226 * 20.87856 * 15 14 12 17 17 O 1.43749 * 109.87989 * 293.29674 * 12 11 10 18 18 C 1.47098 * 114.32696 * 274.99033 * 5 4 2 19 19 C 1.54864 * 110.32273 * 62.79928 * 18 5 4 20 20 N 1.44571 * 109.60187 * 288.73591 * 19 18 5 21 21 C 1.36939 * 118.64498 * 270.75151 * 20 19 18 22 22 H 1.07994 * 119.99891 * 140.40570 * 21 20 19 23 23 C 1.38814 * 119.99871 * 320.39442 * 21 20 19 24 24 N 1.31617 * 119.99931 * 156.09455 * 23 21 20 25 25 Si 1.86802 * 120.00064 * 336.09876 * 23 21 20 26 26 H 1.48504 * 109.46876 * 95.20754 * 25 23 21 27 27 H 1.48491 * 109.47010 * 215.20820 * 25 23 21 28 28 H 1.48493 * 109.47002 * 335.20962 * 25 23 21 29 29 C 1.47610 * 122.71411 * 90.72766 * 20 19 18 30 30 H 1.08996 * 109.46710 * 298.86236 * 1 2 3 31 31 H 1.08996 * 109.46798 * 58.86239 * 1 2 3 32 32 H 1.08997 * 109.47098 * 178.86639 * 1 2 3 33 33 H 1.09001 * 109.47296 * 179.74747 * 3 2 1 34 34 H 1.09007 * 109.47089 * 299.74978 * 3 2 1 35 35 H 1.08999 * 109.47395 * 59.74223 * 3 2 1 36 36 H 1.08993 * 109.48427 * 211.72846 * 4 2 1 37 37 H 1.08994 * 109.48913 * 91.65849 * 4 2 1 38 38 H 0.96990 * 120.00069 * 29.76180 * 7 5 4 39 39 H 1.09001 * 109.47443 * 300.00889 * 10 8 7 40 40 H 1.09009 * 109.46380 * 60.00390 * 10 8 7 41 41 H 1.09001 * 109.47613 * 300.00005 * 11 10 8 42 42 H 1.09001 * 109.47403 * 60.00661 * 11 10 8 43 43 H 1.09005 * 110.48907 * 240.13268 * 14 12 11 44 44 H 1.09004 * 110.48400 * 2.77228 * 14 12 11 45 45 H 1.09000 * 110.90737 * 139.07997 * 15 14 12 46 46 H 1.09007 * 110.90773 * 262.65076 * 15 14 12 47 47 H 1.09014 * 110.61580 * 81.47706 * 16 15 14 48 48 H 1.08999 * 110.62274 * 204.31297 * 16 15 14 49 49 H 1.08994 * 109.32911 * 183.06743 * 18 5 4 50 50 H 1.09007 * 109.32653 * 302.54243 * 18 5 4 51 51 H 1.09004 * 109.44702 * 48.77858 * 19 18 5 52 52 H 1.09003 * 109.44641 * 168.71990 * 19 18 5 53 53 H 0.96995 * 120.00183 * 180.02562 * 24 23 21 54 54 H 1.08994 * 108.94562 * 78.54859 * 29 20 19 55 55 H 1.08990 * 108.95066 * 197.18225 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0374 1.4434 0.0000 4 6 2.0304 -0.7035 -1.2375 5 6 1.0025 -1.7403 -1.6802 6 1 0.0066 -1.3411 -1.4880 7 7 1.1468 -1.9519 -3.1227 8 6 0.0766 -2.3036 -3.8626 9 8 -1.0049 -2.4497 -3.3335 10 6 0.2249 -2.5208 -5.3464 11 6 -1.1296 -2.9082 -5.9431 12 6 -0.9789 -3.1293 -7.4495 13 1 -0.1894 -3.8564 -7.6401 14 6 -2.3095 -3.6336 -8.0409 15 6 -2.6738 -2.5766 -9.1116 16 6 -1.3012 -1.9148 -9.3946 17 8 -0.6643 -1.8851 -8.0971 18 6 1.1230 -3.0406 -1.0031 19 6 0.8754 -2.8803 0.5172 20 7 1.9928 -2.1891 1.1203 21 6 3.0508 -2.9273 1.5797 22 1 4.0602 -2.5707 1.4375 23 6 2.8258 -4.1337 2.2283 24 7 3.7674 -5.0530 2.2535 25 14 1.1865 -4.4527 3.0652 26 1 0.2942 -5.1955 2.1391 27 1 1.4061 -5.2580 4.2933 28 1 0.5559 -3.1583 3.4282 29 6 2.0406 -0.7205 1.2610 30 1 -0.3632 0.4961 0.9000 31 1 -0.3633 0.5314 -0.8796 32 1 -0.3633 -1.0274 -0.0203 33 1 3.1274 1.4455 0.0045 34 1 1.6768 1.9553 -0.8923 35 1 1.6694 1.9579 0.8876 36 1 2.9754 -1.1996 -1.0167 37 1 2.1790 0.0247 -2.0348 38 1 2.0125 -1.8390 -3.5452 39 1 0.5784 -1.6021 -5.8146 40 1 0.9437 -3.3202 -5.5265 41 1 -1.4835 -3.8268 -5.4750 42 1 -1.8481 -2.1086 -5.7630 43 1 -2.1758 -4.6126 -8.5013 44 1 -3.0783 -3.6758 -7.2692 45 1 -3.0688 -3.0523 -10.0092 46 1 -3.3824 -1.8493 -8.7150 47 1 -0.7201 -2.5191 -10.0915 48 1 -1.4346 -0.9051 -9.7830 49 1 0.3895 -3.7323 -1.4172 50 1 2.1240 -3.4404 -1.1654 51 1 -0.0366 -2.3052 0.6777 52 1 0.7689 -3.8645 0.9733 53 1 3.6101 -5.8961 2.7064 54 1 1.4246 -0.4262 2.1106 55 1 3.0700 -0.4164 1.4501 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479742525.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:32 Heat of formation + Delta-G solvation = -82.386762 kcal Electronic energy + Delta-G solvation = -31230.367128 eV Core-core repulsion = 27266.976885 eV Total energy + Delta-G solvation = -3963.390244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 4.42 seconds Orbital eigenvalues (eV) -41.58021 -40.47500 -39.79117 -36.50988 -35.97467 -34.54027 -33.64806 -32.98449 -32.38823 -29.71051 -28.79907 -28.24488 -27.51555 -25.94269 -25.09286 -23.52567 -22.77620 -21.84041 -21.54115 -21.24393 -19.37727 -18.70691 -18.00478 -17.82697 -17.31798 -16.85431 -16.84087 -16.53057 -16.21629 -15.97608 -15.63391 -15.25985 -15.02999 -14.84220 -14.49054 -14.28866 -14.21672 -14.12425 -13.90906 -13.77564 -13.64610 -13.22721 -13.00873 -12.90474 -12.85014 -12.62198 -12.61111 -12.40657 -12.26669 -12.15697 -12.03597 -11.87644 -11.84995 -11.80570 -11.68067 -11.51389 -11.44919 -11.22744 -10.85911 -10.72402 -10.60158 -10.57502 -9.97066 -8.68081 -8.21355 -5.56772 1.28618 1.37488 1.48546 1.73213 2.29596 2.41066 2.96952 3.03546 3.38402 3.63937 3.69575 3.73251 3.91102 3.93914 4.03721 4.06250 4.11535 4.12285 4.19625 4.33091 4.37105 4.42215 4.49618 4.60739 4.62505 4.65339 4.70614 4.76314 4.79705 4.80627 4.83154 4.84941 4.94200 4.96464 4.97115 5.04909 5.07671 5.11297 5.13225 5.15019 5.19850 5.21483 5.28259 5.31089 5.37921 5.45518 5.52574 5.62218 5.67401 5.97650 6.01156 6.19130 6.66571 7.05398 7.35523 7.68339 8.06245 8.98266 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015577 B = 0.002625 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.147531 B =10665.365805 C =11626.433640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.073 4.073 3 C -0.128 4.128 4 C -0.094 4.094 5 C 0.145 3.855 6 H 0.091 0.909 7 N -0.720 5.720 8 C 0.506 3.494 9 O -0.588 6.588 10 C -0.129 4.129 11 C -0.097 4.097 12 C 0.076 3.924 13 H 0.079 0.921 14 C -0.155 4.155 15 C -0.153 4.153 16 C 0.039 3.961 17 O -0.396 6.396 18 C -0.134 4.134 19 C 0.140 3.860 20 N -0.606 5.606 21 C -0.253 4.253 22 H 0.045 0.955 23 C -0.013 4.013 24 N -0.943 5.943 25 Si 0.930 3.070 26 H -0.283 1.283 27 H -0.307 1.307 28 H -0.261 1.261 29 C 0.155 3.845 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.409 0.591 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.100 0.900 49 H 0.043 0.957 50 H 0.045 0.955 51 H 0.063 0.937 52 H 0.026 0.974 53 H 0.261 0.739 54 H 0.020 0.980 55 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 9.748 -23.238 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.132 4.132 5 C 0.041 3.959 6 H 0.109 0.891 7 N -0.371 5.371 8 C 0.294 3.706 9 O -0.469 6.469 10 C -0.168 4.168 11 C -0.135 4.135 12 C 0.019 3.981 13 H 0.097 0.903 14 C -0.192 4.192 15 C -0.190 4.190 16 C -0.037 4.037 17 O -0.316 6.316 18 C -0.175 4.175 19 C 0.014 3.986 20 N -0.329 5.329 21 C -0.383 4.383 22 H 0.063 0.937 23 C -0.210 4.210 24 N -0.587 5.587 25 Si 0.760 3.240 26 H -0.211 1.211 27 H -0.235 1.235 28 H -0.186 1.186 29 C 0.031 3.969 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.245 0.755 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.116 0.884 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.118 0.882 49 H 0.062 0.938 50 H 0.064 0.936 51 H 0.081 0.919 52 H 0.044 0.956 53 H 0.070 0.930 54 H 0.038 0.962 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.654 9.718 -22.703 26.896 hybrid contribution -0.087 -1.107 0.750 1.340 sum -10.741 8.611 -21.953 25.912 Atomic orbital electron populations 1.22327 0.94962 1.01730 1.01970 1.20628 0.95757 0.96393 0.94652 1.21789 1.01049 0.93108 1.02592 1.21223 0.97953 0.96681 0.97376 1.20115 1.01850 0.94726 0.79184 0.89124 1.46343 1.12216 1.69916 1.08612 1.21339 0.83511 0.75149 0.90594 1.90661 1.28271 1.52942 1.74985 1.21639 1.00463 1.05400 0.89319 1.21468 0.96240 1.02329 0.93446 1.22833 0.97120 0.86310 0.91883 0.90302 1.23033 0.96841 1.00260 0.99107 1.23129 0.97917 0.98279 0.99719 1.23758 0.92118 1.02438 0.85404 1.88902 1.74497 1.37919 1.30305 1.21529 1.00478 0.97757 0.97696 1.21208 0.90602 0.95373 0.91436 1.43916 1.19038 1.02135 1.67840 1.18687 0.87115 1.02021 1.30466 0.93746 1.26000 0.99373 0.96881 0.98773 1.69995 1.36724 1.06282 1.45745 0.86054 0.82116 0.77960 0.77895 1.21063 1.23507 1.18564 1.21497 0.99061 0.81546 0.94831 0.92167 0.91735 0.92628 0.92451 0.91136 0.91973 0.92632 0.89558 0.75481 0.87220 0.87196 0.90824 0.92304 0.89162 0.90698 0.88436 0.91005 0.91072 0.88228 0.93845 0.93633 0.91864 0.95579 0.92956 0.96158 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 6.76 71.98 0.49 -3.84 16 2 C -0.07 -2.11 0.75 -52.55 -0.04 -2.15 16 3 C -0.13 -2.87 8.15 71.98 0.59 -2.28 16 4 C -0.09 -2.77 4.38 29.76 0.13 -2.64 16 5 C 0.14 4.67 1.79 43.01 0.08 4.75 16 6 H 0.09 3.09 3.95 -2.39 -0.01 3.09 16 7 N -0.72 -19.20 4.88 -452.04 -2.21 -21.41 16 8 C 0.51 14.17 7.67 87.66 0.67 14.84 16 9 O -0.59 -21.36 15.47 -3.05 -0.05 -21.41 16 10 C -0.13 -2.54 5.61 29.85 0.17 -2.38 16 11 C -0.10 -1.96 3.99 30.59 0.12 -1.84 16 12 C 0.08 1.22 3.40 30.97 0.11 1.33 16 13 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 14 C -0.15 -1.97 6.64 31.58 0.21 -1.76 16 15 C -0.15 -1.63 7.16 31.89 0.23 -1.40 16 16 C 0.04 0.47 7.72 72.66 0.56 1.03 16 17 O -0.40 -7.27 10.84 -148.98 -1.61 -8.89 16 18 C -0.13 -5.35 5.20 29.40 0.15 -5.20 16 19 C 0.14 6.23 4.44 87.38 0.39 6.62 16 20 N -0.61 -28.09 1.82 -698.39 -1.27 -29.36 16 21 C -0.25 -14.14 9.67 84.03 0.81 -13.33 16 22 H 0.04 2.72 8.06 -2.91 -0.02 2.70 16 23 C -0.01 -0.79 5.22 84.86 0.44 -0.35 16 24 N -0.94 -59.09 13.97 21.65 0.30 -58.78 16 25 Si 0.93 47.52 25.25 68.60 1.73 49.25 16 26 H -0.28 -14.19 6.67 99.48 0.66 -13.53 16 27 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 28 H -0.26 -12.85 7.11 99.48 0.71 -12.15 16 29 C 0.15 5.86 5.14 86.49 0.44 6.31 16 30 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 31 H 0.06 1.62 7.96 -2.39 -0.02 1.60 16 32 H 0.06 1.82 3.12 -2.39 -0.01 1.82 16 33 H 0.06 1.28 8.12 -2.39 -0.02 1.26 16 34 H 0.07 1.33 8.08 -2.38 -0.02 1.31 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.94 7.48 -2.39 -0.02 1.92 16 37 H 0.09 2.04 7.63 -2.39 -0.02 2.02 16 38 H 0.41 8.57 8.61 -92.72 -0.80 7.77 16 39 H 0.11 1.93 7.89 -2.39 -0.02 1.91 16 40 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 42 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 43 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.07 1.05 7.70 -2.38 -0.02 1.03 16 45 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.04 1.79 7.94 -2.39 -0.02 1.77 16 50 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 51 H 0.06 2.59 5.25 -2.38 -0.01 2.58 16 52 H 0.03 1.31 3.44 -2.39 -0.01 1.30 16 53 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 54 H 0.02 0.77 7.96 -2.39 -0.02 0.75 16 55 H 0.05 1.99 7.71 -2.39 -0.02 1.98 16 Total: -1.00 -71.84 403.60 2.47 -69.36 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.03 Total: 23.52 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 5.55 Total: -2.29 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -3.17 Total: -109.55 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -1.66 Total: -30.30 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.73 Total: 49.25 kcal Total: -71.84 2.47 -69.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479742525.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.023 kcal (2) G-P(sol) polarization free energy of solvation -71.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.42 seconds