Wall clock time and date at job start Tue Mar 31 2020 21:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42892 * 109.47242 * 2 1 4 4 C 1.53000 * 109.46891 * 240.00294 * 2 1 3 5 5 C 1.50697 * 109.47158 * 59.99733 * 4 2 1 6 6 O 1.21277 * 120.00377 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99876 * 179.97438 * 5 4 2 8 8 C 1.46498 * 119.99648 * 180.02562 * 7 5 4 9 9 H 1.09001 * 110.21492 * 35.00462 * 8 7 5 10 10 C 1.52524 * 110.24978 * 273.06095 * 8 7 5 11 11 C 1.46242 * 114.27548 * 151.47969 * 10 8 7 12 12 N 1.50168 * 107.53529 * 58.41363 * 11 10 8 13 13 C 1.36929 * 120.53853 * 109.60524 * 12 11 10 14 14 H 1.08001 * 120.00400 * 320.02051 * 13 12 11 15 15 C 1.38810 * 119.99937 * 140.01830 * 13 12 11 16 16 N 1.31615 * 120.00278 * 156.55510 * 15 13 12 17 17 Si 1.86805 * 120.00125 * 336.55454 * 15 13 12 18 18 H 1.48497 * 109.47018 * 95.56331 * 17 15 13 19 19 H 1.48497 * 109.47568 * 215.56663 * 17 15 13 20 20 H 1.48498 * 109.46984 * 335.56828 * 17 15 13 21 21 C 1.43436 * 118.92352 * 289.59292 * 12 11 10 22 22 C 1.54902 * 116.08126 * 91.56181 * 21 12 11 23 23 C 1.53001 * 109.35832 * 78.84710 * 22 21 12 24 24 C 1.53002 * 109.35834 * 198.43479 * 22 21 12 25 25 C 1.50132 * 110.24674 * 156.93505 * 8 7 5 26 26 C 1.53001 * 109.47113 * 120.00485 * 2 1 3 27 27 C 1.52996 * 117.49929 * 13.61631 * 26 2 1 28 28 C 1.52998 * 60.00147 * 252.51053 * 27 26 2 29 29 H 1.09002 * 109.47340 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46820 * 299.99755 * 1 2 3 31 31 H 1.08996 * 109.47053 * 59.99404 * 1 2 3 32 32 H 0.96698 * 114.00132 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46820 * 299.99940 * 4 2 1 34 34 H 1.08997 * 109.47019 * 180.02562 * 4 2 1 35 35 H 0.96998 * 120.00086 * 359.97438 * 7 5 4 36 36 H 1.08995 * 108.52849 * 272.72211 * 10 8 7 37 37 H 1.09007 * 108.52036 * 30.40103 * 10 8 7 38 38 H 1.09004 * 109.84583 * 177.91992 * 11 10 8 39 39 H 1.08999 * 109.84442 * 298.83949 * 11 10 8 40 40 H 0.97009 * 120.00244 * 180.02562 * 16 15 13 41 41 H 1.09004 * 108.15711 * 213.28160 * 21 12 11 42 42 H 1.09000 * 108.16040 * 330.05363 * 21 12 11 43 43 H 1.09004 * 109.47113 * 59.99414 * 23 22 21 44 44 H 1.08997 * 109.47137 * 180.02562 * 23 22 21 45 45 H 1.09004 * 109.47001 * 300.00117 * 23 22 21 46 46 H 1.08997 * 109.47136 * 59.99988 * 24 22 21 47 47 H 1.08996 * 109.46946 * 180.02562 * 24 22 21 48 48 H 1.09003 * 109.46693 * 300.00126 * 24 22 21 49 49 H 1.09003 * 109.20754 * 337.14323 * 25 8 7 50 50 H 1.09000 * 109.21007 * 96.45305 * 25 8 7 51 51 H 1.08997 * 115.54966 * 159.32750 * 26 2 1 52 52 H 1.08996 * 117.49959 * 0.02562 * 27 26 2 53 53 H 1.08999 * 117.49845 * 145.02668 * 27 26 2 54 54 H 1.08997 * 117.50581 * 252.51015 * 28 27 26 55 55 H 1.09010 * 117.49413 * 107.48561 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 8 0.8407 0.9755 -2.3684 7 7 1.8636 -0.4709 -3.7039 8 6 1.3756 0.2201 -4.8999 9 1 1.3342 1.2949 -4.7234 10 6 -0.0030 -0.3050 -5.2874 11 6 -0.8437 0.6689 -5.9827 12 7 -0.1092 1.0992 -7.2198 13 6 -0.5492 0.7164 -8.4587 14 1 -0.9240 -0.2847 -8.6132 15 6 -0.5135 1.6149 -9.5161 16 7 -0.4819 1.1722 -10.7552 17 14 -0.5104 3.4526 -9.1806 18 1 0.8872 3.9544 -9.1862 19 1 -1.2909 4.1496 -10.2342 20 1 -1.1250 3.7146 -7.8544 21 6 1.0606 1.9179 -7.0827 22 6 2.4107 1.1652 -6.9829 23 6 2.8496 0.7235 -8.3805 24 6 3.4697 2.0990 -6.3934 25 6 2.2642 -0.0800 -6.0722 26 6 2.0400 -0.7214 1.2492 27 6 1.0320 -1.5510 2.0469 28 6 1.5417 -0.2214 2.6066 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 2.9703 1.4235 0.0004 33 1 1.6766 -1.7489 -1.2493 34 1 3.1299 -0.7216 -1.2491 35 1 2.4219 -1.2591 -3.7929 36 1 0.1261 -1.1740 -5.9325 37 1 -0.5202 -0.6213 -4.3815 38 1 -1.7931 0.2091 -6.2571 39 1 -1.0222 1.5301 -5.3388 40 1 -0.4566 1.8002 -11.4941 41 1 1.1081 2.5887 -7.9405 42 1 0.9466 2.5255 -6.1850 43 1 2.9670 1.5996 -9.0183 44 1 3.7994 0.1932 -8.3124 45 1 2.0946 0.0626 -8.8065 46 1 3.1577 2.4209 -5.3999 47 1 4.4207 1.5713 -6.3229 48 1 3.5850 2.9704 -7.0381 49 1 3.2468 -0.3817 -5.7094 50 1 1.8308 -0.8954 -6.6514 51 1 3.0642 -1.0903 1.1938 52 1 0.0056 -1.5832 1.6816 53 1 1.3928 -2.4660 2.5165 54 1 2.2379 -0.2616 3.4443 55 1 0.8504 0.6215 2.6096 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479744231.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:47 Heat of formation + Delta-G solvation = -58.708265 kcal Electronic energy + Delta-G solvation = -32030.061963 eV Core-core repulsion = 28067.698496 eV Total energy + Delta-G solvation = -3962.363467 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.45658 -40.41620 -39.10543 -36.46312 -36.13174 -35.85154 -34.09281 -32.86249 -32.04502 -29.55654 -28.44185 -28.11962 -27.43076 -25.54110 -24.92931 -23.27358 -23.10972 -21.66980 -21.33011 -20.51866 -20.03794 -18.45865 -18.14506 -17.65475 -17.26043 -16.92047 -16.50136 -16.37349 -16.19325 -15.53975 -15.51057 -15.10842 -15.01806 -14.86346 -14.59270 -14.23958 -14.01069 -13.91805 -13.88992 -13.59721 -13.33651 -13.29206 -13.03355 -12.94933 -12.74103 -12.61844 -12.56782 -12.33345 -12.13838 -12.07031 -12.01339 -11.82994 -11.75131 -11.62923 -11.43255 -11.36413 -11.23814 -11.16721 -11.05192 -10.86832 -10.53025 -10.34805 -9.88468 -8.63557 -8.18590 -5.54988 1.27211 1.37408 1.48463 1.84479 2.27869 2.42378 2.84396 3.05274 3.30455 3.55475 3.63704 3.73346 3.83118 3.94119 3.98055 4.03510 4.11086 4.20710 4.26976 4.29544 4.37601 4.42249 4.46715 4.59630 4.65572 4.66425 4.76520 4.79787 4.85322 4.86397 4.87598 4.92381 4.97718 5.02191 5.04919 5.06768 5.07236 5.10279 5.15229 5.24211 5.28131 5.31406 5.32686 5.38683 5.46186 5.49857 5.53072 5.70523 5.78764 6.00184 6.20616 6.76558 7.00766 7.03725 7.50916 7.66041 8.15074 9.00770 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.002821 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.138771 B = 9922.301971 C =10212.525869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.179 3.821 3 O -0.564 6.564 4 C -0.157 4.157 5 C 0.506 3.494 6 O -0.562 6.562 7 N -0.714 5.714 8 C 0.163 3.837 9 H 0.067 0.933 10 C -0.127 4.127 11 C 0.139 3.861 12 N -0.607 5.607 13 C -0.241 4.241 14 H 0.044 0.956 15 C 0.001 3.999 16 N -0.937 5.937 17 Si 0.920 3.080 18 H -0.278 1.278 19 H -0.308 1.308 20 H -0.272 1.272 21 C 0.154 3.846 22 C -0.082 4.082 23 C -0.120 4.120 24 C -0.131 4.131 25 C -0.092 4.092 26 C -0.182 4.182 27 C -0.173 4.173 28 C -0.175 4.175 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.381 0.619 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.412 0.588 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.029 0.971 40 H 0.261 0.739 41 H 0.017 0.983 42 H 0.031 0.969 43 H 0.027 0.973 44 H 0.066 0.934 45 H 0.038 0.962 46 H 0.051 0.949 47 H 0.077 0.923 48 H 0.044 0.956 49 H 0.084 0.916 50 H 0.058 0.942 51 H 0.126 0.874 52 H 0.097 0.903 53 H 0.110 0.890 54 H 0.105 0.895 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.833 -8.241 24.912 28.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.138 3.862 3 O -0.371 6.371 4 C -0.197 4.197 5 C 0.293 3.707 6 O -0.440 6.440 7 N -0.367 5.367 8 C 0.058 3.942 9 H 0.086 0.914 10 C -0.167 4.167 11 C 0.016 3.984 12 N -0.330 5.330 13 C -0.371 4.371 14 H 0.062 0.938 15 C -0.197 4.197 16 N -0.581 5.581 17 Si 0.751 3.249 18 H -0.206 1.206 19 H -0.237 1.237 20 H -0.197 1.197 21 C 0.027 3.973 22 C -0.085 4.085 23 C -0.177 4.177 24 C -0.188 4.188 25 C -0.130 4.130 26 C -0.200 4.200 27 C -0.210 4.210 28 C -0.212 4.212 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.229 0.771 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.249 0.751 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.063 0.937 49 H 0.103 0.897 50 H 0.077 0.923 51 H 0.144 0.856 52 H 0.116 0.884 53 H 0.128 0.872 54 H 0.123 0.877 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.650 -7.379 24.833 28.010 hybrid contribution 0.224 0.768 -0.804 1.135 sum 10.874 -6.610 24.029 27.190 Atomic orbital electron populations 1.22091 0.94195 1.02311 1.02680 1.20308 0.93944 0.81311 0.90655 1.86705 1.27037 1.26450 1.96900 1.22426 1.04418 1.01777 0.91050 1.21120 0.79856 0.84380 0.85306 1.90707 1.38732 1.27770 1.86818 1.46094 1.53594 1.32257 1.04709 1.19915 0.93226 0.96649 0.84454 0.91445 1.21121 0.96750 0.99642 0.99154 1.20446 0.94891 0.96105 0.86960 1.44262 1.24806 1.62009 1.01949 1.18474 1.38580 0.94810 0.85205 0.93846 1.25879 0.98706 1.00225 0.94881 1.69969 1.53695 1.35358 0.99033 0.86190 0.77224 0.84584 0.76935 1.20567 1.23658 1.19723 1.20837 0.87001 0.92193 0.97297 1.21771 0.95635 0.96038 0.95057 1.21624 1.00358 1.00108 0.95604 1.21799 0.98334 0.98837 0.99868 1.21665 0.99598 0.97400 0.94316 1.22993 1.00444 1.04533 0.92067 1.23187 0.99378 0.95349 1.03096 1.22880 1.04003 0.97925 0.96410 0.90040 0.93093 0.92214 0.77130 0.85868 0.85746 0.75098 0.92218 0.92715 0.92111 0.95238 0.92965 0.96481 0.95117 0.95369 0.91519 0.94271 0.92978 0.90441 0.93709 0.89718 0.92304 0.85568 0.88444 0.87208 0.87712 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 7.18 71.98 0.52 -2.82 16 2 C 0.18 3.01 0.80 -10.79 -0.01 3.00 16 3 O -0.56 -12.25 11.85 -131.52 -1.56 -13.81 16 4 C -0.16 -2.08 4.95 29.85 0.15 -1.93 16 5 C 0.51 11.64 7.31 87.66 0.64 12.28 16 6 O -0.56 -18.81 12.64 14.44 0.18 -18.63 16 7 N -0.71 -15.03 4.98 -447.71 -2.23 -17.26 16 8 C 0.16 4.77 2.13 43.91 0.09 4.87 16 9 H 0.07 2.41 5.21 -2.39 -0.01 2.39 16 10 C -0.13 -4.24 4.92 28.36 0.14 -4.10 16 11 C 0.14 5.69 6.11 83.58 0.51 6.20 16 12 N -0.61 -28.50 2.14 -707.82 -1.51 -30.01 16 13 C -0.24 -13.35 9.24 84.03 0.78 -12.58 16 14 H 0.04 2.65 8.06 -2.91 -0.02 2.63 16 15 C 0.00 0.03 5.28 84.86 0.45 0.48 16 16 N -0.94 -57.53 13.97 21.65 0.30 -57.23 16 17 Si 0.92 47.61 25.26 68.60 1.73 49.34 16 18 H -0.28 -13.91 6.74 99.48 0.67 -13.24 16 19 H -0.31 -16.06 7.11 99.48 0.71 -15.36 16 20 H -0.27 -14.03 7.11 99.48 0.71 -13.32 16 21 C 0.15 6.66 3.05 87.60 0.27 6.93 16 22 C -0.08 -2.82 0.77 -50.86 -0.04 -2.86 16 23 C -0.12 -4.49 8.29 71.98 0.60 -3.90 16 24 C -0.13 -3.71 8.20 71.98 0.59 -3.12 16 25 C -0.09 -2.65 4.16 30.34 0.13 -2.52 16 26 C -0.18 -2.08 5.32 -10.79 -0.06 -2.14 16 27 C -0.17 -1.87 9.65 30.59 0.30 -1.57 16 28 C -0.18 -2.25 9.85 30.59 0.30 -1.95 16 29 H 0.08 1.37 6.74 -2.39 -0.02 1.36 16 30 H 0.05 1.11 6.96 -2.38 -0.02 1.10 16 31 H 0.06 1.75 5.51 -2.39 -0.01 1.73 16 32 H 0.38 5.22 9.05 -74.06 -0.67 4.55 16 33 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.41 5.70 8.49 -92.71 -0.79 4.91 16 36 H 0.06 2.05 6.94 -2.39 -0.02 2.03 16 37 H 0.05 1.73 7.96 -2.38 -0.02 1.71 16 38 H 0.06 2.51 7.99 -2.38 -0.02 2.49 16 39 H 0.03 1.23 8.13 -2.39 -0.02 1.21 16 40 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 41 H 0.02 0.84 3.25 -2.39 -0.01 0.83 16 42 H 0.03 1.30 6.66 -2.39 -0.02 1.29 16 43 H 0.03 1.12 8.13 -2.38 -0.02 1.10 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.04 1.76 7.45 -2.38 -0.02 1.74 16 46 H 0.05 1.45 7.57 -2.39 -0.02 1.44 16 47 H 0.08 1.76 8.12 -2.39 -0.02 1.75 16 48 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.08 1.86 7.66 -2.39 -0.02 1.84 16 50 H 0.06 1.92 6.66 -2.39 -0.02 1.90 16 51 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.10 1.16 5.89 -2.39 -0.01 1.15 16 53 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 54 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 55 H 0.08 1.33 7.29 -2.38 -0.02 1.31 16 Total: -1.00 -73.85 404.00 1.66 -72.19 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.60 Total: 21.13 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 5.35 Total: -5.73 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -3.44 Total: -104.50 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.38 Total: -32.43 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.73 Total: 49.34 kcal Total: -73.85 1.66 -72.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479744231.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.481 kcal (2) G-P(sol) polarization free energy of solvation -73.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds