Wall clock time and date at job start Tue Mar 31 2020 21:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42902 * 109.46960 * 2 1 4 4 C 1.53000 * 109.47010 * 119.99722 * 2 1 3 5 5 C 1.50694 * 109.46974 * 180.19340 * 4 2 1 6 6 O 1.21278 * 120.00234 * 354.32371 * 5 4 2 7 7 N 1.34778 * 120.00024 * 174.31971 * 5 4 2 8 8 C 1.46501 * 120.00292 * 180.02562 * 7 5 4 9 9 H 1.09002 * 108.44249 * 327.30329 * 8 7 5 10 10 C 1.47083 * 108.51766 * 84.99526 * 8 7 5 11 11 C 1.54860 * 110.32651 * 184.05892 * 10 8 7 12 12 N 1.44585 * 109.59822 * 288.73411 * 11 10 8 13 13 C 1.36936 * 118.64265 * 270.70158 * 12 11 10 14 14 H 1.08001 * 120.00065 * 29.74278 * 13 12 11 15 15 C 1.38804 * 120.00113 * 209.74326 * 13 12 11 16 16 N 1.31624 * 120.00275 * 11.75400 * 15 13 12 17 17 Si 1.86798 * 120.00382 * 191.75865 * 15 13 12 18 18 H 1.48510 * 109.47086 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47619 * 119.99517 * 17 15 13 20 20 H 1.48502 * 109.47336 * 239.99853 * 17 15 13 21 21 C 1.47595 * 122.71048 * 90.72642 * 12 11 10 22 22 C 1.53945 * 112.14434 * 317.86482 * 21 12 11 23 23 C 1.53003 * 109.36657 * 79.63156 * 22 21 12 24 24 C 1.53006 * 109.37109 * 199.37614 * 22 21 12 25 25 C 1.50884 * 110.09837 * 319.44095 * 22 21 12 26 26 C 1.52999 * 109.47179 * 239.99851 * 2 1 3 27 27 C 1.52997 * 117.49924 * 128.74713 * 26 2 1 28 28 C 1.53005 * 117.50051 * 60.08635 * 26 2 1 29 29 H 1.08999 * 109.47023 * 304.27869 * 1 2 3 30 30 H 1.09002 * 109.46390 * 64.28099 * 1 2 3 31 31 H 1.08994 * 109.46894 * 184.27678 * 1 2 3 32 32 H 0.96703 * 113.99469 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46841 * 60.19628 * 4 2 1 34 34 H 1.08995 * 109.47034 * 300.19866 * 4 2 1 35 35 H 0.97001 * 119.99833 * 359.97438 * 7 5 4 36 36 H 1.09005 * 109.33071 * 304.32073 * 10 8 7 37 37 H 1.09000 * 109.33227 * 63.79391 * 10 8 7 38 38 H 1.09000 * 109.45012 * 48.77544 * 11 10 8 39 39 H 1.08999 * 109.45484 * 168.69485 * 11 10 8 40 40 H 0.96991 * 120.00295 * 180.02562 * 16 15 13 41 41 H 1.08991 * 108.95156 * 78.55396 * 21 12 11 42 42 H 1.09003 * 108.94839 * 197.27379 * 21 12 11 43 43 H 1.08997 * 109.47340 * 59.84789 * 23 22 21 44 44 H 1.08997 * 109.47137 * 179.85035 * 23 22 21 45 45 H 1.09002 * 109.47021 * 299.84913 * 23 22 21 46 46 H 1.08994 * 109.47243 * 59.99738 * 24 22 21 47 47 H 1.08999 * 109.47192 * 179.97438 * 24 22 21 48 48 H 1.09002 * 109.46447 * 299.99926 * 24 22 21 49 49 H 1.09002 * 109.48778 * 331.91821 * 25 22 21 50 50 H 1.09002 * 109.48969 * 211.85116 * 25 22 21 51 51 H 1.08997 * 115.55195 * 274.41860 * 26 2 1 52 52 H 1.09006 * 117.49853 * 359.97438 * 27 26 2 53 53 H 1.09007 * 117.50224 * 145.02051 * 27 26 2 54 54 H 1.08998 * 117.49804 * 214.98312 * 28 26 2 55 55 H 1.09002 * 117.49663 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5470 -0.7170 1.2517 6 8 4.1538 -0.2817 0.2961 7 7 4.2205 -1.1970 2.3159 8 6 5.6855 -1.1925 2.3185 9 1 6.0327 -1.3407 1.2959 10 6 6.1478 0.1245 2.7823 11 6 7.6920 0.2106 2.7047 12 7 8.2765 -0.6254 3.7294 13 6 8.5150 -0.0815 4.9633 14 1 7.8880 0.7169 5.3319 15 6 9.5626 -0.5563 5.7403 16 7 10.4634 -1.3574 5.2120 17 14 9.6941 -0.0584 7.5359 18 1 8.5659 0.8426 7.8837 19 1 9.6412 -1.2712 8.3911 20 1 10.9799 0.6499 7.7604 21 6 8.6270 -2.0407 3.5003 22 6 7.5435 -2.7844 2.6986 23 6 7.6958 -2.4545 1.2123 24 6 7.7061 -4.2920 2.9028 25 6 6.1720 -2.3638 3.1664 26 6 2.0401 -0.7213 -1.2492 27 6 3.0764 0.0039 -2.1100 28 6 1.6375 -0.1484 -2.6096 29 1 -0.3633 0.5788 0.8492 30 1 -0.3632 0.4460 -0.9259 31 1 -0.3633 -1.0248 0.0766 32 1 2.9704 1.4236 -0.0004 33 1 1.6796 -1.7499 1.2475 34 1 1.6738 -0.2094 2.1392 35 1 3.7353 -1.5448 3.0804 36 1 5.7112 0.9017 2.1550 37 1 5.8294 0.2760 3.8137 38 1 8.0257 -0.1298 1.7245 39 1 8.0061 1.2434 2.8561 40 1 11.1953 -1.6895 5.7550 41 1 9.5679 -2.0880 2.9521 42 1 8.7539 -2.5344 4.4637 43 1 8.6829 -2.7655 0.8704 44 1 6.9310 -2.9823 0.6427 45 1 7.5820 -1.3804 1.0650 46 1 7.6024 -4.5284 3.9618 47 1 6.9393 -4.8202 2.3362 48 1 8.6922 -4.6012 2.5564 49 1 6.2219 -2.0598 4.2120 50 1 5.4802 -3.1998 3.0630 51 1 2.1254 -1.8046 -1.1647 52 1 3.3946 0.9951 -1.7866 53 1 3.8433 -0.6024 -2.5922 54 1 1.4583 -0.8549 -3.4201 55 1 1.0089 0.7421 -2.6147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479744240.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:01 Heat of formation + Delta-G solvation = -51.501909 kcal Electronic energy + Delta-G solvation = -32301.895925 eV Core-core repulsion = 28339.844949 eV Total energy + Delta-G solvation = -3962.050976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.65980 -40.57973 -38.91652 -36.30837 -35.87004 -35.69228 -33.85758 -33.10624 -31.68365 -29.33290 -28.45328 -28.20538 -27.35385 -25.73960 -24.43273 -23.42330 -23.05196 -21.67170 -21.16303 -20.70718 -19.43980 -18.52815 -18.11020 -17.76549 -17.45210 -16.91960 -16.48450 -16.40224 -15.97190 -15.41329 -15.32397 -15.13552 -14.99917 -14.50699 -14.22404 -14.12641 -13.83180 -13.75964 -13.64154 -13.34492 -13.24118 -13.02504 -12.99439 -12.96092 -12.87511 -12.78999 -12.63359 -12.26544 -12.17080 -12.13273 -11.98920 -11.90759 -11.78433 -11.59830 -11.50952 -11.28764 -11.09798 -11.04677 -10.76080 -10.72350 -10.48066 -10.32032 -9.87574 -8.57095 -7.82471 -5.32967 1.44495 1.47176 1.56498 1.79557 2.33783 2.51768 3.00354 3.30745 3.35179 3.69269 3.72081 3.79376 3.85926 3.91124 4.05973 4.14771 4.19784 4.24641 4.26046 4.46450 4.47865 4.48586 4.58983 4.70863 4.74706 4.77181 4.80027 4.84336 4.85155 4.86893 4.88250 4.95449 5.01586 5.02837 5.05216 5.16416 5.20213 5.22564 5.29186 5.30477 5.35196 5.36055 5.40863 5.43330 5.52932 5.58703 5.68601 5.69986 5.76083 5.89726 6.45012 6.72050 6.76644 7.22608 7.42915 7.98165 8.37846 9.21372 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.002964 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.577127 B = 9443.045691 C =10018.951822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.171 3.829 3 O -0.578 6.578 4 C -0.162 4.162 5 C 0.507 3.493 6 O -0.563 6.563 7 N -0.719 5.719 8 C 0.150 3.850 9 H 0.091 0.909 10 C -0.133 4.133 11 C 0.150 3.850 12 N -0.599 5.599 13 C -0.261 4.261 14 H 0.060 0.940 15 C -0.044 4.044 16 N -0.933 5.933 17 Si 0.961 3.039 18 H -0.269 1.269 19 H -0.290 1.290 20 H -0.295 1.295 21 C 0.208 3.792 22 C -0.084 4.084 23 C -0.145 4.145 24 C -0.126 4.126 25 C -0.091 4.091 26 C -0.166 4.166 27 C -0.153 4.153 28 C -0.174 4.174 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.381 0.619 33 H 0.128 0.872 34 H 0.111 0.889 35 H 0.407 0.593 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.030 0.970 40 H 0.248 0.752 41 H -0.011 1.011 42 H 0.039 0.961 43 H 0.043 0.957 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.047 0.953 49 H 0.051 0.949 50 H 0.081 0.919 51 H 0.104 0.896 52 H 0.082 0.918 53 H 0.079 0.921 54 H 0.100 0.900 55 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.491 -4.310 -10.266 23.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.130 3.870 3 O -0.389 6.389 4 C -0.202 4.202 5 C 0.295 3.705 6 O -0.443 6.443 7 N -0.370 5.370 8 C 0.046 3.954 9 H 0.109 0.891 10 C -0.174 4.174 11 C 0.022 3.978 12 N -0.321 5.321 13 C -0.392 4.392 14 H 0.077 0.923 15 C -0.240 4.240 16 N -0.579 5.579 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.216 1.216 20 H -0.222 1.222 21 C 0.083 3.917 22 C -0.086 4.086 23 C -0.201 4.201 24 C -0.184 4.184 25 C -0.129 4.129 26 C -0.185 4.185 27 C -0.190 4.190 28 C -0.211 4.211 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.233 0.767 33 H 0.146 0.854 34 H 0.129 0.871 35 H 0.242 0.758 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.007 0.993 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.092 0.908 48 H 0.066 0.934 49 H 0.070 0.930 50 H 0.099 0.901 51 H 0.123 0.877 52 H 0.100 0.900 53 H 0.097 0.903 54 H 0.118 0.882 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.544 -3.947 -10.887 23.583 hybrid contribution 1.457 0.131 1.598 2.166 sum -19.087 -3.816 -9.289 21.567 Atomic orbital electron populations 1.21759 0.90650 1.03714 1.02942 1.20558 0.94885 0.80969 0.90625 1.86411 1.28465 1.27156 1.96821 1.22485 0.90851 1.05402 1.01449 1.21091 0.90870 0.76622 0.81938 1.90660 1.71044 1.47482 1.35067 1.46351 1.07158 1.63520 1.19986 1.20005 0.79199 0.94421 1.01739 0.89116 1.21584 0.98320 0.97316 1.00155 1.20906 0.91418 0.93692 0.91752 1.43778 1.72318 1.06771 1.09210 1.19456 1.08386 1.17436 0.93929 0.92277 1.25787 0.95265 1.00521 1.02409 1.70203 1.14001 1.38037 1.35663 0.85308 0.77247 0.77399 0.81095 1.19330 1.21627 1.22230 1.20788 0.91670 0.82693 0.96559 1.20813 0.95815 0.96199 0.95751 1.22258 1.00904 1.01842 0.95105 1.21758 1.01693 0.93655 1.01284 1.21166 0.95679 0.96696 0.99347 1.22844 1.04477 0.99120 0.92030 1.22573 0.91906 1.01526 1.03035 1.23036 0.98140 1.03078 0.96862 0.91663 0.91988 0.88917 0.76712 0.85407 0.87086 0.75779 0.92729 0.93642 0.93182 0.95113 0.94295 0.99290 0.94250 0.93750 0.91792 0.91862 0.93437 0.90780 0.93365 0.93033 0.90095 0.87749 0.90004 0.90270 0.88177 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.75 71.99 0.63 -1.18 16 2 C 0.17 3.08 0.92 -10.79 -0.01 3.07 16 3 O -0.58 -13.92 12.11 -133.14 -1.61 -15.53 16 4 C -0.16 -2.47 4.96 29.85 0.15 -2.32 16 5 C 0.51 11.32 7.16 87.66 0.63 11.94 16 6 O -0.56 -15.83 10.87 12.82 0.14 -15.69 16 7 N -0.72 -16.13 4.88 -452.07 -2.21 -18.33 16 8 C 0.15 4.43 1.79 43.01 0.08 4.51 16 9 H 0.09 2.89 3.95 -2.39 -0.01 2.88 16 10 C -0.13 -4.63 5.19 29.39 0.15 -4.48 16 11 C 0.15 6.28 5.58 87.37 0.49 6.77 16 12 N -0.60 -29.10 2.26 -698.41 -1.58 -30.68 16 13 C -0.26 -14.12 9.42 84.03 0.79 -13.33 16 14 H 0.06 3.18 7.86 -2.91 -0.02 3.16 16 15 C -0.04 -2.44 4.95 84.86 0.42 -2.02 16 16 N -0.93 -54.51 11.00 21.65 0.24 -54.27 16 17 Si 0.96 44.66 29.57 68.60 2.03 46.69 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 20 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 21 C 0.21 9.68 3.53 86.49 0.31 9.98 16 22 C -0.08 -2.88 0.75 -52.55 -0.04 -2.92 16 23 C -0.14 -4.60 6.76 71.98 0.49 -4.11 16 24 C -0.13 -3.74 8.15 71.98 0.59 -3.16 16 25 C -0.09 -2.78 4.38 29.76 0.13 -2.65 16 26 C -0.17 -3.16 4.01 -10.79 -0.04 -3.21 16 27 C -0.15 -3.47 7.91 30.62 0.24 -3.23 16 28 C -0.17 -3.17 9.62 30.62 0.29 -2.87 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.90 7.15 -2.39 -0.02 0.88 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.38 9.94 5.37 -74.06 -0.40 9.55 16 33 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.41 7.07 8.61 -92.71 -0.80 6.27 16 36 H 0.05 1.87 7.95 -2.38 -0.02 1.85 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 2.04 5.23 -2.39 -0.01 2.03 16 39 H 0.03 1.35 7.99 -2.39 -0.02 1.34 16 40 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 41 H -0.01 -0.58 7.83 -2.39 -0.02 -0.60 16 42 H 0.04 2.08 6.28 -2.39 -0.01 2.06 16 43 H 0.04 1.43 8.13 -2.39 -0.02 1.41 16 44 H 0.06 1.75 7.91 -2.39 -0.02 1.73 16 45 H 0.06 2.17 3.15 -2.39 -0.01 2.17 16 46 H 0.05 1.45 8.12 -2.39 -0.02 1.43 16 47 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 48 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.05 1.88 7.48 -2.39 -0.02 1.86 16 50 H 0.08 2.01 7.63 -2.39 -0.02 1.99 16 51 H 0.10 1.87 8.11 -2.39 -0.02 1.85 16 52 H 0.08 2.09 6.29 -2.38 -0.02 2.08 16 53 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 54 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 55 H 0.09 1.69 7.59 -2.39 -0.02 1.67 16 Total: -1.00 -64.58 400.00 1.99 -62.59 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.31 Total: 34.43 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 5.29 Total: -9.21 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -3.55 Total: -103.28 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -1.47 Total: -31.22 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.58 1.99 -62.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479744240.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.093 kcal (2) G-P(sol) polarization free energy of solvation -64.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds