Wall clock time and date at job start Tue Mar 31 2020 21:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46638 * 2 1 4 4 C 1.53000 * 109.46638 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47659 * 59.99938 * 4 3 2 6 6 O 1.42899 * 109.47357 * 59.99857 * 5 4 3 7 7 C 1.42898 * 114.00450 * 150.00190 * 6 5 4 8 8 C 1.50695 * 109.46992 * 180.02562 * 7 6 5 9 9 O 1.21276 * 120.00518 * 359.97438 * 8 7 6 10 10 N 1.34786 * 119.99779 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99760 * 359.97438 * 10 8 7 12 12 C 1.46492 * 119.99963 * 180.02562 * 10 8 7 13 13 C 1.53045 * 109.46131 * 239.99711 * 12 10 8 14 14 C 1.53190 * 109.31412 * 178.61543 * 13 12 10 15 15 N 1.46924 * 108.89302 * 54.56599 * 14 13 12 16 16 C 1.36939 * 120.63060 * 126.46770 * 15 14 13 17 17 H 1.07997 * 119.99691 * 332.72781 * 16 15 14 18 18 C 1.38808 * 119.99990 * 152.73100 * 16 15 14 19 19 N 1.31611 * 120.00187 * 159.40601 * 18 16 15 20 20 Si 1.86807 * 120.00080 * 339.40635 * 18 16 15 21 21 H 1.48502 * 109.46912 * 92.90377 * 20 18 16 22 22 H 1.48493 * 109.47014 * 212.90653 * 20 18 16 23 23 H 1.48501 * 109.46860 * 332.90463 * 20 18 16 24 24 C 1.46967 * 118.71435 * 306.63798 * 15 14 13 25 25 C 1.53043 * 109.46146 * 119.93120 * 12 10 8 26 26 C 1.53005 * 109.47121 * 300.00138 * 5 4 3 27 27 C 1.52994 * 109.47302 * 240.00058 * 2 1 3 28 28 H 1.09004 * 109.47296 * 60.00443 * 1 2 3 29 29 H 1.09005 * 109.47214 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47490 * 300.00110 * 1 2 3 31 31 H 1.08997 * 109.46925 * 119.99628 * 2 1 3 32 32 H 1.09000 * 109.47270 * 59.99755 * 3 2 1 33 33 H 1.08997 * 109.47159 * 299.99485 * 3 2 1 34 34 H 1.09004 * 109.47296 * 299.99557 * 4 3 2 35 35 H 1.09005 * 109.47214 * 180.02562 * 4 3 2 36 36 H 1.08996 * 109.47549 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.46762 * 60.00306 * 7 6 5 38 38 H 1.08996 * 109.46642 * 300.00354 * 7 6 5 39 39 H 1.09004 * 109.47584 * 270.00168 * 11 10 8 40 40 H 1.09000 * 109.47312 * 30.00340 * 11 10 8 41 41 H 1.08998 * 109.47199 * 150.00150 * 11 10 8 42 42 H 1.09003 * 109.45426 * 359.96581 * 12 10 8 43 43 H 1.08999 * 109.49467 * 58.66061 * 13 12 10 44 44 H 1.09001 * 109.52263 * 298.58657 * 13 12 10 45 45 H 1.09004 * 109.58495 * 174.42385 * 14 13 12 46 46 H 1.08999 * 109.58469 * 294.70784 * 14 13 12 47 47 H 0.97006 * 120.00623 * 179.97438 * 19 18 16 48 48 H 1.08999 * 109.46555 * 293.57797 * 24 15 14 49 49 H 1.08995 * 109.70994 * 173.28941 * 24 15 14 50 50 H 1.08998 * 109.49429 * 301.33701 * 25 12 10 51 51 H 1.08996 * 109.49685 * 61.43262 * 25 12 10 52 52 H 1.09000 * 109.47245 * 179.97438 * 26 5 4 53 53 H 1.09004 * 109.46611 * 299.99633 * 26 5 4 54 54 H 1.09003 * 109.47210 * 299.99710 * 27 2 1 55 55 H 1.08997 * 109.47481 * 59.99911 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0805 0.7212 -1.2482 6 8 3.6048 1.3945 -2.4153 7 6 4.4774 1.2915 -3.5422 8 6 3.8802 2.0343 -4.7095 9 8 2.8123 2.5962 -4.5885 10 7 4.5326 2.0734 -5.8883 11 6 5.8223 1.3942 -6.0346 12 6 3.9523 2.7960 -7.0229 13 6 3.7286 1.8254 -8.1849 14 6 3.0900 2.5771 -9.3570 15 7 3.9282 3.7363 -9.6922 16 6 4.3735 3.9284 -10.9728 17 1 4.5094 3.0821 -11.6299 18 6 4.6502 5.2107 -11.4264 19 7 5.4379 5.3853 -12.4662 20 14 3.9044 6.6888 -10.5610 21 1 4.8480 7.1852 -9.5273 22 1 3.6453 7.7639 -11.5520 23 1 2.6272 6.2920 -9.9157 24 6 4.2826 4.6833 -8.6257 25 6 4.9079 3.9080 -7.4617 26 6 3.5706 -0.7214 -1.2482 27 6 2.0400 -0.7212 -1.2492 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9289 0.8909 35 1 3.9333 2.4703 0.0011 36 1 5.1705 0.7208 -1.2475 37 1 4.6068 0.2421 -3.8067 38 1 5.4456 1.7255 -3.2927 39 1 6.6269 2.0821 -5.7743 40 1 5.8549 0.5296 -5.3717 41 1 5.9449 1.0656 -7.0666 42 1 2.9989 3.2328 -6.7259 43 1 3.0665 1.0210 -7.8646 44 1 4.6846 1.4065 -8.4989 45 1 3.0193 1.9154 -10.2204 46 1 2.0935 2.9164 -9.0741 47 1 5.6310 6.2815 -12.7835 48 1 3.3844 5.1964 -8.2823 49 1 4.9980 5.4130 -9.0048 50 1 5.0852 4.5858 -6.6267 51 1 5.8530 3.4700 -7.7824 52 1 3.9340 -1.2352 -2.1381 53 1 3.9336 -1.2350 -0.3579 54 1 1.6767 -1.7489 -1.2492 55 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479896601.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:27 Heat of formation + Delta-G solvation = -93.060601 kcal Electronic energy + Delta-G solvation = -30905.841528 eV Core-core repulsion = 26941.988431 eV Total energy + Delta-G solvation = -3963.853096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.33706 -40.30057 -39.17610 -37.30793 -36.62033 -34.41252 -32.84473 -32.26142 -32.00817 -31.66673 -29.00159 -27.95592 -26.96827 -26.41591 -24.47583 -23.67987 -23.49671 -22.12536 -21.20878 -20.53850 -20.21689 -18.85088 -18.20127 -17.68432 -17.27753 -17.16355 -16.64083 -16.33075 -15.98609 -15.79224 -15.38316 -15.16874 -15.06851 -14.89170 -14.69780 -14.54431 -14.30769 -13.99297 -13.92615 -13.83821 -13.72480 -13.53323 -13.44084 -13.14581 -13.11984 -12.66397 -12.55485 -12.50783 -12.36683 -12.31496 -12.22685 -12.03903 -11.98580 -11.79457 -11.49505 -11.39144 -11.36564 -11.20482 -10.90376 -10.84223 -10.65614 -10.36084 -9.64994 -8.99489 -8.18339 -5.50028 1.26645 1.39352 1.47689 1.56141 1.71692 2.38891 2.90197 3.02856 3.29988 3.53088 3.77873 3.80067 3.86913 3.91656 3.93164 4.09832 4.18252 4.21071 4.25927 4.27312 4.29086 4.34402 4.41256 4.43736 4.54095 4.57682 4.64833 4.65812 4.69102 4.70069 4.76705 4.83116 4.88786 4.90432 4.95106 4.96958 4.99985 5.02504 5.03699 5.12836 5.14473 5.16851 5.31366 5.35046 5.38522 5.39987 5.45183 5.51715 5.66636 5.84982 6.11225 6.20558 6.45145 6.88018 7.15729 7.59073 8.00607 9.01161 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.002244 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.050716 B =12472.226963 C =12656.354171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.114 4.114 5 C 0.081 3.919 6 O -0.383 6.383 7 C 0.052 3.948 8 C 0.505 3.495 9 O -0.578 6.578 10 N -0.605 5.605 11 C 0.065 3.935 12 C 0.153 3.847 13 C -0.124 4.124 14 C 0.145 3.855 15 N -0.618 5.618 16 C -0.244 4.244 17 H 0.060 0.940 18 C -0.030 4.030 19 N -0.952 5.952 20 Si 0.937 3.063 21 H -0.275 1.275 22 H -0.309 1.309 23 H -0.269 1.269 24 C 0.123 3.877 25 C -0.125 4.125 26 C -0.137 4.137 27 C -0.111 4.111 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.025 0.975 47 H 0.262 0.738 48 H 0.023 0.977 49 H 0.056 0.944 50 H 0.067 0.933 51 H 0.074 0.926 52 H 0.067 0.933 53 H 0.092 0.908 54 H 0.065 0.935 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 -15.870 29.408 33.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.150 4.150 4 C -0.151 4.151 5 C 0.024 3.976 6 O -0.302 6.302 7 C -0.027 4.027 8 C 0.294 3.706 9 O -0.457 6.457 10 N -0.338 5.338 11 C -0.076 4.076 12 C 0.049 3.951 13 C -0.164 4.164 14 C 0.020 3.980 15 N -0.343 5.343 16 C -0.374 4.374 17 H 0.078 0.922 18 C -0.225 4.225 19 N -0.598 5.598 20 Si 0.767 3.233 21 H -0.201 1.201 22 H -0.238 1.238 23 H -0.194 1.194 24 C -0.002 4.002 25 C -0.165 4.165 26 C -0.175 4.175 27 C -0.148 4.148 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.041 0.959 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.093 0.907 52 H 0.086 0.914 53 H 0.111 0.889 54 H 0.084 0.916 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.072 -15.400 29.375 33.167 hybrid contribution -0.300 1.218 -0.602 1.392 sum -0.228 -14.182 28.772 32.078 Atomic orbital electron populations 1.21835 0.95681 1.01800 1.01257 1.21117 0.95283 0.95686 0.98488 1.21485 0.95833 0.96707 1.00952 1.21657 0.95935 1.00895 0.96642 1.22396 0.98545 0.91945 0.84736 1.88068 1.46486 1.75544 1.20086 1.22350 0.94011 1.01017 0.85354 1.21072 0.84592 0.80565 0.84384 1.90694 1.24076 1.47318 1.83660 1.48013 1.22797 1.52821 1.10201 1.22127 0.82971 0.97904 1.04605 1.20785 0.96689 0.92249 0.85381 1.22176 1.02036 0.97653 0.94519 1.21050 0.92117 0.88348 0.96518 1.44520 1.58088 1.27176 1.04508 1.18875 1.36772 0.92508 0.89206 0.92225 1.25810 0.99533 0.99841 0.97334 1.69935 1.37938 1.22450 1.29522 0.86056 0.80010 0.80168 0.77049 1.20143 1.23827 1.19429 1.21322 0.97077 0.92746 0.89084 1.22172 0.99405 0.97575 0.97332 1.22046 0.95980 0.96104 1.03364 1.21476 0.95910 0.99889 0.97567 0.94435 0.92061 0.92184 0.89841 0.91708 0.94280 0.88318 0.92070 0.89767 0.87717 0.87714 0.91105 0.87997 0.90375 0.91194 0.90577 0.90687 0.91506 0.95659 0.92911 0.95943 0.92593 0.91421 0.90696 0.91395 0.88936 0.91610 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.19 71.98 0.66 -1.57 16 2 C -0.09 -1.26 2.72 -10.79 -0.03 -1.29 16 3 C -0.11 -1.89 5.06 30.60 0.15 -1.74 16 4 C -0.11 -1.53 5.66 30.59 0.17 -1.35 16 5 C 0.08 1.10 2.92 30.59 0.09 1.19 16 6 O -0.38 -8.39 8.17 -129.94 -1.06 -9.45 16 7 C 0.05 0.91 4.78 71.23 0.34 1.25 16 8 C 0.50 13.88 7.75 87.65 0.68 14.56 16 9 O -0.58 -22.32 15.83 16.02 0.25 -22.06 16 10 N -0.61 -15.01 2.76 -822.44 -2.27 -17.28 16 11 C 0.07 1.01 9.33 127.77 1.19 2.20 16 12 C 0.15 4.85 2.48 45.02 0.11 4.97 16 13 C -0.12 -3.84 5.31 30.67 0.16 -3.68 16 14 C 0.15 5.63 6.51 86.36 0.56 6.20 16 15 N -0.62 -29.18 2.78 -699.01 -1.94 -31.12 16 16 C -0.24 -13.72 10.04 84.03 0.84 -12.88 16 17 H 0.06 3.61 8.05 -2.91 -0.02 3.58 16 18 C -0.03 -1.76 5.23 84.86 0.44 -1.32 16 19 N -0.95 -59.49 13.97 21.65 0.30 -59.19 16 20 Si 0.94 47.48 24.35 68.60 1.67 49.15 16 21 H -0.27 -13.14 6.62 99.48 0.66 -12.48 16 22 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 23 H -0.27 -13.45 6.63 99.48 0.66 -12.79 16 24 C 0.12 5.37 4.20 86.35 0.36 5.73 16 25 C -0.12 -4.28 5.34 30.67 0.16 -4.12 16 26 C -0.14 -1.58 5.63 30.61 0.17 -1.41 16 27 C -0.11 -1.73 5.06 30.61 0.15 -1.58 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.04 0.94 7.68 -2.39 -0.02 0.92 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.08 0.74 7.79 -2.39 -0.02 0.72 16 37 H 0.11 1.21 7.13 -2.39 -0.02 1.19 16 38 H 0.11 1.23 8.05 -2.39 -0.02 1.22 16 39 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.10 0.86 6.44 -2.39 -0.02 0.84 16 41 H 0.08 1.30 6.46 -2.39 -0.02 1.29 16 42 H 0.07 2.65 6.90 -2.39 -0.02 2.63 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.07 2.22 6.73 -2.39 -0.02 2.20 16 45 H 0.07 2.56 7.93 -2.38 -0.02 2.55 16 46 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 48 H 0.02 1.00 7.07 -2.39 -0.02 0.99 16 49 H 0.06 2.65 4.50 -2.39 -0.01 2.64 16 50 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.07 2.47 7.72 -2.39 -0.02 2.45 16 52 H 0.07 0.72 7.87 -2.39 -0.02 0.70 16 53 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 54 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 55 H 0.04 0.89 7.68 -2.39 -0.02 0.87 16 Total: -1.00 -76.14 407.59 3.93 -72.21 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.74 Total: 12.58 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 6.24 Total: 5.17 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -3.91 Total: -107.60 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.81 Total: -31.52 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.67 Total: 49.15 kcal Total: -76.14 3.93 -72.21 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479896601.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.853 kcal (2) G-P(sol) polarization free energy of solvation -76.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds