Wall clock time and date at job start Tue Mar 31 2020 22:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 110.80619 * 2 1 4 4 C 1.55003 * 110.90334 * 236.33598 * 2 1 3 5 5 O 1.44573 * 103.58323 * 204.85662 * 4 2 1 6 6 C 1.43748 * 106.87016 * 39.88010 * 5 4 2 7 7 H 1.09003 * 109.87606 * 93.17035 * 6 5 4 8 8 C 1.53006 * 109.87914 * 214.16832 * 6 5 4 9 9 C 1.52996 * 109.47261 * 293.29696 * 8 6 5 10 10 C 1.50700 * 109.46981 * 179.97438 * 9 8 6 11 11 O 1.21283 * 120.00281 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99929 * 179.97438 * 10 9 8 13 13 C 1.46931 * 120.63029 * 359.97438 * 12 10 9 14 14 C 1.53200 * 108.77279 * 126.41292 * 13 12 10 15 15 C 1.53039 * 109.31160 * 54.63574 * 14 13 12 16 16 C 1.53046 * 109.52798 * 298.64112 * 15 14 13 17 17 H 1.08994 * 109.49581 * 301.40708 * 16 15 14 18 18 C 1.52997 * 109.49532 * 181.31043 * 16 15 14 19 19 N 1.46503 * 109.47071 * 65.00161 * 18 16 15 20 20 C 1.36941 * 119.99691 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00046 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99808 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99830 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 119.99947 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47350 * 90.00194 * 24 22 20 26 26 H 1.48508 * 109.47173 * 210.00395 * 24 22 20 27 27 H 1.48499 * 109.47295 * 330.00397 * 24 22 20 28 28 C 1.46928 * 120.63179 * 180.02562 * 12 10 9 29 29 C 1.54099 * 107.42042 * 333.66934 * 6 5 4 30 30 H 1.09003 * 109.46828 * 296.36863 * 1 2 3 31 31 H 1.09003 * 109.47235 * 56.36544 * 1 2 3 32 32 H 1.08998 * 109.47303 * 176.37231 * 1 2 3 33 33 H 1.08994 * 109.47003 * 183.62880 * 3 2 1 34 34 H 1.09004 * 109.47424 * 303.63136 * 3 2 1 35 35 H 1.09003 * 109.46700 * 63.62957 * 3 2 1 36 36 H 1.08999 * 110.61993 * 323.27911 * 4 2 1 37 37 H 1.09001 * 110.61745 * 86.27978 * 4 2 1 38 38 H 1.09006 * 109.46871 * 173.28969 * 8 6 5 39 39 H 1.08999 * 109.46612 * 53.29799 * 8 6 5 40 40 H 1.09000 * 109.47400 * 59.99611 * 9 8 6 41 41 H 1.09001 * 109.46877 * 299.99576 * 9 8 6 42 42 H 1.08998 * 109.58425 * 6.63242 * 13 12 10 43 43 H 1.08995 * 109.70793 * 246.26860 * 13 12 10 44 44 H 1.08997 * 109.49280 * 294.68615 * 14 13 12 45 45 H 1.08992 * 109.49396 * 174.58854 * 14 13 12 46 46 H 1.09002 * 109.46050 * 58.65698 * 15 14 13 47 47 H 1.09004 * 109.46034 * 178.62914 * 15 14 13 48 48 H 1.09000 * 109.47186 * 185.00028 * 18 16 15 49 49 H 1.08994 * 109.47529 * 304.99976 * 18 16 15 50 50 H 0.96992 * 120.00441 * 359.97438 * 19 18 16 51 51 H 0.97006 * 119.99866 * 179.97438 * 23 22 20 52 52 H 1.08999 * 109.58766 * 353.37877 * 28 12 10 53 53 H 1.09002 * 109.58364 * 113.65972 * 28 12 10 54 54 H 1.09001 * 110.48679 * 120.63108 * 29 6 5 55 55 H 1.09001 * 110.48701 * 243.27884 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0735 1.4302 0.0000 4 6 2.0831 -0.8027 -1.2052 5 8 3.3954 -1.2180 -0.7631 6 6 3.2718 -1.5881 0.6204 7 1 3.0837 -2.6587 0.7022 8 6 4.5543 -1.2265 1.3723 9 6 5.7056 -2.0971 0.8651 10 6 6.9689 -1.7405 1.6053 11 8 6.9504 -0.8749 2.4546 12 7 8.1194 -2.3835 1.3235 13 6 8.1576 -3.4347 0.2977 14 6 9.2602 -3.0990 -0.7115 15 6 10.5827 -2.8979 0.0320 16 6 10.4479 -1.7268 1.0080 17 1 10.1762 -0.8252 0.4591 18 6 11.7801 -1.5056 1.7272 19 7 12.7950 -1.0866 0.7573 20 6 14.0739 -0.8284 1.1730 21 1 14.3345 -0.9340 2.2158 22 6 15.0357 -0.4319 0.2540 23 7 14.7182 -0.3036 -1.0169 24 14 16.7805 -0.0803 0.8209 25 1 17.5845 -1.3268 0.7506 26 1 17.3882 0.9510 -0.0580 27 1 16.7559 0.4145 2.2208 28 6 9.3590 -2.0473 2.0370 29 6 2.0825 -0.8010 1.2041 30 1 -0.3633 0.4565 0.9208 31 1 -0.3634 0.5692 -0.8556 32 1 -0.3634 -1.0256 -0.0650 33 1 3.1612 1.4055 -0.0650 34 1 1.6705 1.9721 -0.8557 35 1 1.7758 1.9319 0.9208 36 1 1.4561 -1.6708 -1.4084 37 1 2.1582 -0.1672 -2.0876 38 1 4.4109 -1.3989 2.4391 39 1 4.7910 -0.1761 1.2027 40 1 5.8489 -1.9247 -0.2016 41 1 5.4689 -3.1475 1.0348 42 1 7.1961 -3.4813 -0.2137 43 1 8.3701 -4.3964 0.7647 44 1 8.9996 -2.1844 -1.2441 45 1 9.3637 -3.9181 -1.4230 46 1 10.8302 -3.8044 0.5844 47 1 11.3740 -2.6829 -0.6862 48 1 11.6598 -0.7312 2.4847 49 1 12.0943 -2.4342 2.2037 50 1 12.5611 -0.9921 -0.1792 51 1 15.3903 -0.0262 -1.6591 52 1 9.1903 -1.1786 2.6734 53 1 9.6693 -2.8941 2.6493 54 1 1.3246 -1.4838 1.5881 55 1 2.4210 -0.1247 1.9891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480302009.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:29 Heat of formation + Delta-G solvation = -118.572984 kcal Electronic energy + Delta-G solvation = -29969.660052 eV Core-core repulsion = 26004.700656 eV Total energy + Delta-G solvation = -3964.959396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.38485 -40.77777 -38.91016 -36.61380 -35.63680 -34.64675 -34.20208 -32.94498 -31.80376 -30.24983 -28.24786 -27.44034 -27.00145 -26.53671 -25.20300 -24.13202 -23.08875 -21.96212 -21.23325 -20.37452 -19.78397 -19.21836 -18.13144 -17.23250 -16.96250 -16.73561 -16.44137 -16.36712 -16.11328 -15.72711 -15.53617 -15.32645 -15.07599 -14.96261 -14.64369 -14.47249 -14.23780 -13.86230 -13.79940 -13.76536 -13.64811 -13.47694 -13.30714 -12.99027 -12.78983 -12.76183 -12.67265 -12.39586 -12.20760 -12.17715 -12.12049 -12.03334 -11.94675 -11.73030 -11.61964 -11.58171 -11.48753 -11.39113 -11.34037 -10.94249 -10.74800 -10.47972 -9.63763 -9.01824 -7.96943 -5.26009 1.45704 1.47930 1.56436 1.62514 2.01049 2.54897 2.96386 3.36139 3.43635 3.56181 3.74263 3.77916 3.80634 3.90695 3.93286 3.98110 4.05675 4.15953 4.27138 4.29443 4.32157 4.40105 4.40866 4.47730 4.56737 4.59409 4.68384 4.71928 4.72491 4.75746 4.78292 4.82869 4.86639 4.88067 4.89275 4.92241 4.95944 5.04628 5.06929 5.12820 5.18022 5.20836 5.23699 5.31319 5.35143 5.39296 5.42751 5.45621 5.49539 5.54122 6.03432 6.25037 6.44606 7.17438 7.31365 8.06398 8.30942 9.26635 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021521 B = 0.001839 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.747213 B =15224.872653 C =15460.405531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 C -0.137 4.137 4 C 0.051 3.949 5 O -0.393 6.393 6 C 0.080 3.920 7 H 0.087 0.913 8 C -0.098 4.098 9 C -0.126 4.126 10 C 0.506 3.494 11 O -0.592 6.592 12 N -0.610 5.610 13 C 0.107 3.893 14 C -0.129 4.129 15 C -0.107 4.107 16 C -0.093 4.093 17 H 0.047 0.953 18 C 0.158 3.842 19 N -0.742 5.742 20 C -0.248 4.248 21 H 0.075 0.925 22 C -0.076 4.076 23 N -0.969 5.969 24 Si 0.976 3.024 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.271 1.271 28 C 0.127 3.873 29 C -0.144 4.144 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.104 0.896 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.045 0.955 48 H 0.012 0.988 49 H 0.030 0.970 50 H 0.374 0.626 51 H 0.252 0.748 52 H 0.068 0.932 53 H 0.084 0.916 54 H 0.093 0.907 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.177 -8.355 0.797 34.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 C -0.194 4.194 4 C -0.026 4.026 5 O -0.313 6.313 6 C 0.022 3.978 7 H 0.104 0.896 8 C -0.136 4.136 9 C -0.165 4.165 10 C 0.296 3.704 11 O -0.473 6.473 12 N -0.342 5.342 13 C -0.015 4.015 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.113 4.113 17 H 0.066 0.934 18 C 0.031 3.969 19 N -0.385 5.385 20 C -0.380 4.380 21 H 0.093 0.907 22 C -0.268 4.268 23 N -0.620 5.620 24 Si 0.805 3.195 25 H -0.211 1.211 26 H -0.221 1.221 27 H -0.196 1.196 28 C 0.003 3.997 29 C -0.181 4.181 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.123 0.877 41 H 0.141 0.859 42 H 0.131 0.869 43 H 0.110 0.890 44 H 0.072 0.928 45 H 0.118 0.882 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.030 0.970 49 H 0.048 0.952 50 H 0.206 0.794 51 H 0.060 0.940 52 H 0.087 0.913 53 H 0.102 0.898 54 H 0.112 0.888 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -32.871 -7.910 1.255 33.832 hybrid contribution 1.407 0.834 -0.074 1.637 sum -31.464 -7.076 1.181 32.271 Atomic orbital electron populations 1.21731 0.91943 1.02726 1.02609 1.22132 0.97203 0.95730 0.94938 1.21768 1.00335 0.95012 1.02268 1.23818 0.83715 0.97903 0.97123 1.88912 1.30463 1.86473 1.25408 1.22811 0.94265 0.99232 0.81482 0.89570 1.21498 0.92930 0.99404 0.99725 1.21675 0.90430 1.03271 1.01165 1.21461 0.86012 0.80237 0.82641 1.90665 1.86449 1.33970 1.36178 1.48271 1.08120 1.38458 1.39379 1.22040 1.00961 0.90087 0.88391 1.21910 0.93976 1.02736 0.98119 1.21460 0.97831 0.97358 0.97823 1.21477 0.93972 0.98796 0.97048 0.93418 1.20725 0.87834 0.96551 0.91753 1.42528 1.06968 1.81907 1.07069 1.19657 0.87602 1.36957 0.93789 0.90726 1.25595 1.02427 1.03153 0.95633 1.69825 1.34565 1.55533 1.02050 0.85101 0.79810 0.77272 0.77328 1.21055 1.22122 1.19628 1.21379 0.83049 1.01526 0.93731 1.23145 0.97450 0.99377 0.98174 0.91987 0.91792 0.91433 0.94013 0.91747 0.92197 0.90722 0.89038 0.90292 0.93201 0.87748 0.85899 0.86881 0.89043 0.92816 0.88249 0.90983 0.93639 0.97049 0.95242 0.79352 0.93960 0.91326 0.89806 0.88798 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 8.55 71.98 0.62 -0.37 16 2 C -0.10 -1.13 0.99 -50.88 -0.05 -1.18 16 3 C -0.14 -1.86 8.53 71.98 0.61 -1.25 16 4 C 0.05 0.63 6.63 72.67 0.48 1.11 16 5 O -0.39 -6.93 10.83 -148.98 -1.61 -8.54 16 6 C 0.08 1.12 3.41 30.97 0.11 1.23 16 7 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 8 C -0.10 -1.81 3.99 30.59 0.12 -1.69 16 9 C -0.13 -2.23 3.96 29.85 0.12 -2.11 16 10 C 0.51 13.45 7.70 87.66 0.67 14.12 16 11 O -0.59 -21.01 15.40 -3.04 -0.05 -21.06 16 12 N -0.61 -15.11 2.97 -818.85 -2.43 -17.54 16 13 C 0.11 1.83 6.34 86.36 0.55 2.38 16 14 C -0.13 -2.81 6.08 30.67 0.19 -2.62 16 15 C -0.11 -3.22 5.06 30.62 0.15 -3.06 16 16 C -0.09 -3.21 2.38 -10.71 -0.03 -3.24 16 17 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 18 C 0.16 6.69 5.65 86.38 0.49 7.18 16 19 N -0.74 -39.32 5.32 -343.45 -1.83 -41.15 16 20 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 21 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 22 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 23 N -0.97 -60.59 13.06 21.65 0.28 -60.30 16 24 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 27 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 28 C 0.13 3.75 5.72 86.37 0.49 4.24 16 29 C -0.14 -1.69 5.81 31.58 0.18 -1.51 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.38 8.09 -2.39 -0.02 0.36 16 33 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.70 8.01 -2.39 -0.02 0.68 16 37 H 0.09 1.09 8.06 -2.39 -0.02 1.07 16 38 H 0.08 1.48 8.10 -2.38 -0.02 1.46 16 39 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 40 H 0.10 1.80 7.44 -2.39 -0.02 1.79 16 41 H 0.12 1.37 7.94 -2.39 -0.02 1.36 16 42 H 0.11 1.31 5.93 -2.39 -0.01 1.30 16 43 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.04 1.68 7.15 -2.39 -0.02 1.66 16 48 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.37 21.00 6.85 -92.71 -0.63 20.37 16 51 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 52 H 0.07 2.35 7.01 -2.39 -0.02 2.33 16 53 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 54 H 0.09 0.77 7.86 -2.39 -0.02 0.75 16 55 H 0.07 0.99 7.42 -2.39 -0.02 0.97 16 Total: -1.00 -74.62 422.81 2.61 -72.01 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.20 Total: 31.64 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 6.02 Total: -4.31 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -3.98 Total: -118.99 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -1.66 Total: -29.60 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -74.62 2.61 -72.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480302009.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.559 kcal (2) G-P(sol) polarization free energy of solvation -74.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds