Wall clock time and date at job start Tue Mar 31 2020 22:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 110.74946 * 2 1 4 4 C 1.54376 * 110.84989 * 123.47522 * 2 1 3 5 5 O 1.43240 * 107.58772 * 139.54723 * 4 2 1 6 6 C 1.43647 * 109.97379 * 1.71258 * 5 4 2 7 7 H 1.08998 * 110.30590 * 94.58475 * 6 5 4 8 8 C 1.52994 * 110.31044 * 216.65445 * 6 5 4 9 9 C 1.52997 * 109.47486 * 293.54608 * 8 6 5 10 10 C 1.50700 * 109.47476 * 179.97438 * 9 8 6 11 11 O 1.21286 * 119.99706 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00297 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00199 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47379 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47486 * 179.97438 * 14 13 12 16 16 H 1.08996 * 110.88363 * 57.42487 * 15 14 13 17 17 C 1.55158 * 111.00727 * 181.35124 * 15 14 13 18 18 C 1.54316 * 102.94139 * 153.57557 * 17 15 14 19 19 N 1.47020 * 107.27568 * 337.80546 * 18 17 15 20 20 C 1.36938 * 125.65236 * 178.97773 * 19 18 17 21 21 H 1.07994 * 120.00035 * 179.97438 * 20 19 18 22 22 C 1.38811 * 119.99774 * 359.95644 * 20 19 18 23 23 N 1.31617 * 120.00082 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99981 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46602 * 60.00170 * 24 22 20 26 26 H 1.48496 * 109.46844 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46930 * 300.00140 * 24 22 20 28 28 C 1.47422 * 108.70191 * 358.94070 * 19 18 17 29 29 C 1.54944 * 105.13469 * 335.57219 * 6 5 4 30 30 H 1.09000 * 109.46912 * 297.97591 * 1 2 3 31 31 H 1.09001 * 109.47217 * 57.98054 * 1 2 3 32 32 H 1.08999 * 109.46620 * 177.97616 * 1 2 3 33 33 H 1.09003 * 109.46984 * 182.01730 * 3 2 1 34 34 H 1.08998 * 109.47811 * 302.02091 * 3 2 1 35 35 H 1.09006 * 109.47053 * 62.02179 * 3 2 1 36 36 H 1.08994 * 109.83201 * 20.03370 * 4 2 1 37 37 H 1.08996 * 109.90863 * 259.10143 * 4 2 1 38 38 H 1.09001 * 109.46963 * 173.54449 * 8 6 5 39 39 H 1.09008 * 109.46924 * 53.54631 * 8 6 5 40 40 H 1.09001 * 109.47149 * 59.99955 * 9 8 6 41 41 H 1.08998 * 109.47121 * 299.99954 * 9 8 6 42 42 H 0.96998 * 119.99866 * 359.97438 * 12 10 9 43 43 H 1.09001 * 109.47139 * 59.99499 * 13 12 10 44 44 H 1.08998 * 109.46834 * 299.99680 * 13 12 10 45 45 H 1.09003 * 109.46693 * 59.99544 * 14 13 12 46 46 H 1.08997 * 109.46709 * 300.00146 * 14 13 12 47 47 H 1.09003 * 110.71801 * 271.94078 * 17 15 14 48 48 H 1.08999 * 110.71744 * 35.03116 * 17 15 14 49 49 H 1.09000 * 109.88340 * 97.22892 * 18 17 15 50 50 H 1.09005 * 109.88355 * 218.23652 * 18 17 15 51 51 H 0.97006 * 120.00279 * 180.02562 * 23 22 20 52 52 H 1.08998 * 110.36873 * 265.28987 * 28 19 18 53 53 H 1.09005 * 110.36491 * 142.96394 * 28 19 18 54 54 H 1.08996 * 111.12865 * 154.36075 * 29 6 5 55 55 H 1.09002 * 111.12340 * 278.52566 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0721 1.4308 0.0000 4 6 2.0795 -0.7957 1.2034 5 8 3.2045 -1.5538 0.7436 6 6 3.4465 -1.2795 -0.6455 7 1 4.1948 -0.4941 -0.7512 8 6 3.9051 -2.5491 -1.3655 9 6 5.2767 -2.9698 -0.8339 10 6 5.7281 -4.2207 -1.5427 11 8 5.0224 -4.7258 -2.3901 12 7 6.9159 -4.7782 -1.2351 13 6 7.3550 -5.9940 -1.9246 14 6 8.7266 -6.4148 -1.3929 15 6 9.1849 -7.6848 -2.1125 16 1 9.2183 -7.5298 -3.1908 17 6 10.5598 -8.1629 -1.5755 18 6 10.5301 -9.6808 -1.8522 19 7 9.1187 -10.0759 -1.9681 20 6 8.6628 -11.3398 -2.2322 21 1 7.6014 -11.5284 -2.2972 22 6 9.5649 -12.3786 -2.4166 23 7 10.8584 -12.1488 -2.3371 24 14 8.9430 -14.1030 -2.7761 25 1 8.1483 -14.0910 -4.0305 26 1 10.0980 -15.0236 -2.9300 27 1 8.0884 -14.5651 -1.6530 28 6 8.2755 -8.8861 -1.7520 29 6 2.0828 -0.8051 -1.2077 30 1 -0.3633 0.4821 0.9076 31 1 -0.3634 0.5449 -0.8713 32 1 -0.3632 -1.0270 -0.0363 33 1 3.1612 1.4067 -0.0362 34 1 1.6913 1.9637 -0.8713 35 1 1.7499 1.9414 0.9076 36 1 1.3109 -1.4684 1.5838 37 1 2.3927 -0.1096 1.9902 38 1 3.9742 -2.3549 -2.4359 39 1 3.1855 -3.3482 -1.1869 40 1 5.2076 -3.1640 0.2364 41 1 5.9962 -2.1708 -1.0126 42 1 7.4805 -4.3741 -0.5577 43 1 7.4246 -5.7998 -2.9949 44 1 6.6352 -6.7928 -1.7463 45 1 8.6574 -6.6089 -0.3225 46 1 9.4461 -5.6158 -1.5715 47 1 11.3740 -7.6870 -2.1223 48 1 10.6468 -7.9644 -0.5073 49 1 11.0536 -9.8982 -2.7832 50 1 11.0011 -10.2171 -1.0284 51 1 11.4889 -12.8746 -2.4664 52 1 7.9637 -8.8263 -0.7093 53 1 7.4055 -8.9135 -2.4081 54 1 2.2185 -0.1636 -2.0784 55 1 1.4386 -1.6524 -1.4428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481459562.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:20 Heat of formation + Delta-G solvation = -112.167230 kcal Electronic energy + Delta-G solvation = -28893.541366 eV Core-core repulsion = 24928.859745 eV Total energy + Delta-G solvation = -3964.681622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.10022 -40.55145 -39.39737 -36.49102 -35.68054 -34.73439 -34.42960 -32.52161 -30.89279 -30.14860 -28.26303 -28.14359 -27.06643 -26.60290 -25.19835 -23.48221 -22.03862 -21.79615 -21.52869 -20.72725 -20.15943 -18.86936 -18.00153 -17.60994 -16.98870 -16.87164 -16.59747 -16.50284 -16.29134 -15.69094 -15.58391 -15.30722 -15.03142 -14.64552 -14.56095 -14.17850 -14.12350 -13.90281 -13.79008 -13.65689 -13.53144 -13.30439 -13.06056 -13.01612 -12.78922 -12.71548 -12.65348 -12.49757 -12.23751 -12.22772 -12.05281 -12.02417 -11.79642 -11.64149 -11.59185 -11.55386 -11.39795 -11.32159 -11.30961 -10.77775 -10.70551 -10.40779 -10.04637 -8.89361 -7.85891 -5.21233 1.43269 1.47041 1.53416 1.69476 2.25460 2.48752 2.88270 3.31499 3.41188 3.65306 3.70160 3.79047 3.85832 3.86398 3.99175 4.02484 4.14517 4.16165 4.30917 4.31804 4.35609 4.38614 4.47752 4.55063 4.62159 4.70071 4.73413 4.74917 4.76873 4.79067 4.84056 4.85397 4.91620 4.97600 5.00032 5.01250 5.06574 5.13816 5.14258 5.17793 5.20647 5.26474 5.28603 5.32190 5.43701 5.44508 5.51238 5.52589 5.70659 5.79166 6.13333 6.20409 6.62593 7.10593 7.32784 7.78578 8.42924 9.24135 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025062 B = 0.001494 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.970727 B =18735.083072 C =19387.135648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C -0.136 4.136 4 C 0.053 3.947 5 O -0.399 6.399 6 C 0.084 3.916 7 H 0.087 0.913 8 C -0.100 4.100 9 C -0.127 4.127 10 C 0.504 3.496 11 O -0.593 6.593 12 N -0.718 5.718 13 C 0.122 3.878 14 C -0.098 4.098 15 C -0.086 4.086 16 H 0.072 0.928 17 C -0.122 4.122 18 C 0.180 3.820 19 N -0.631 5.631 20 C -0.248 4.248 21 H 0.077 0.923 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.979 3.021 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.134 3.866 29 C -0.144 4.144 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.107 0.893 41 H 0.122 0.878 42 H 0.418 0.582 43 H 0.056 0.944 44 H 0.045 0.955 45 H 0.079 0.921 46 H 0.098 0.902 47 H 0.083 0.917 48 H 0.076 0.924 49 H 0.007 0.993 50 H 0.004 0.996 51 H 0.247 0.753 52 H 0.023 0.977 53 H 0.030 0.970 54 H 0.096 0.904 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.920 33.411 6.886 37.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.193 4.193 4 C -0.023 4.023 5 O -0.319 6.319 6 C 0.027 3.973 7 H 0.105 0.895 8 C -0.138 4.138 9 C -0.166 4.166 10 C 0.292 3.708 11 O -0.474 6.474 12 N -0.370 5.370 13 C -0.002 4.002 14 C -0.136 4.136 15 C -0.106 4.106 16 H 0.090 0.910 17 C -0.160 4.160 18 C 0.056 3.944 19 N -0.357 5.357 20 C -0.377 4.377 21 H 0.095 0.905 22 C -0.259 4.259 23 N -0.599 5.599 24 Si 0.807 3.193 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.203 1.203 28 C 0.009 3.991 29 C -0.181 4.181 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.140 0.860 42 H 0.255 0.745 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.117 0.883 47 H 0.101 0.899 48 H 0.095 0.905 49 H 0.026 0.974 50 H 0.022 0.978 51 H 0.056 0.944 52 H 0.041 0.959 53 H 0.048 0.952 54 H 0.114 0.886 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.209 32.707 6.386 36.631 hybrid contribution -0.020 -1.498 -0.157 1.506 sum -15.229 31.209 6.229 35.281 Atomic orbital electron populations 1.21758 0.92595 1.02103 1.02877 1.22122 0.97154 0.96460 0.94092 1.21819 1.01032 0.93612 1.02882 1.23370 0.88169 0.94205 0.96569 1.88382 1.49901 1.67915 1.25727 1.23049 0.97308 0.96196 0.80785 0.89489 1.21443 0.95698 0.96753 0.99892 1.21625 0.98790 0.94564 1.01642 1.21424 0.80597 0.86471 0.82302 1.90699 1.55549 1.65506 1.35639 1.45963 1.20511 1.28033 1.42492 1.21246 0.96037 0.86354 0.96591 1.21579 0.94990 0.96534 1.00486 1.22162 0.94997 0.93556 0.99883 0.91003 1.22760 0.97117 0.94776 1.01330 1.20944 0.84863 0.91470 0.97172 1.44833 1.02710 1.04593 1.83605 1.19437 0.92312 0.85115 1.40848 0.90464 1.25663 0.95688 1.02025 1.02573 1.70192 1.00961 1.31568 1.57221 0.85151 0.76731 0.79200 0.78248 1.20389 1.21663 1.20338 1.21816 0.93557 0.86617 0.97131 1.23419 0.95813 1.00241 0.98670 0.91509 0.91509 0.92841 0.92410 0.91447 0.91576 0.91702 0.90669 0.90220 0.92941 0.87468 0.86011 0.74489 0.92535 0.93645 0.90198 0.88337 0.89871 0.90522 0.97434 0.97785 0.94388 0.95934 0.95164 0.88580 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.50 71.98 0.61 -0.44 16 2 C -0.10 -0.91 0.94 -50.92 -0.05 -0.95 16 3 C -0.14 -0.91 8.47 71.98 0.61 -0.30 16 4 C 0.05 0.66 6.99 72.45 0.51 1.16 16 5 O -0.40 -6.67 10.69 -148.98 -1.59 -8.26 16 6 C 0.08 1.09 3.14 31.26 0.10 1.19 16 7 H 0.09 0.87 7.77 -2.39 -0.02 0.86 16 8 C -0.10 -1.67 4.25 30.59 0.13 -1.54 16 9 C -0.13 -1.88 5.61 29.85 0.17 -1.71 16 10 C 0.50 11.58 7.83 87.66 0.69 12.27 16 11 O -0.59 -19.67 15.98 -3.05 -0.05 -19.72 16 12 N -0.72 -13.80 5.56 -463.06 -2.57 -16.38 16 13 C 0.12 3.00 5.52 86.38 0.48 3.48 16 14 C -0.10 -2.16 4.84 30.59 0.15 -2.01 16 15 C -0.09 -2.79 3.07 -9.40 -0.03 -2.82 16 16 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 17 C -0.12 -4.28 6.42 31.78 0.20 -4.07 16 18 C 0.18 9.17 5.37 86.73 0.47 9.64 16 19 N -0.63 -34.05 3.39 -691.99 -2.35 -36.40 16 20 C -0.25 -14.67 10.28 84.03 0.86 -13.81 16 21 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 22 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 23 N -0.95 -59.04 10.31 21.65 0.22 -58.82 16 24 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 26 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 27 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 28 C 0.13 5.65 5.89 86.86 0.51 6.16 16 29 C -0.14 -1.58 5.53 32.05 0.18 -1.41 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.49 8.12 -2.39 -0.02 0.47 16 33 H 0.06 0.41 7.53 -2.39 -0.02 0.39 16 34 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.06 0.82 7.81 -2.39 -0.02 0.80 16 37 H 0.08 0.78 7.84 -2.39 -0.02 0.77 16 38 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 39 H 0.05 1.14 8.10 -2.38 -0.02 1.12 16 40 H 0.11 1.49 7.91 -2.39 -0.02 1.47 16 41 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.42 4.90 8.47 -92.71 -0.79 4.12 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.05 1.37 7.46 -2.39 -0.02 1.35 16 45 H 0.08 1.66 8.10 -2.39 -0.02 1.64 16 46 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 48 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 49 H 0.01 0.42 7.38 -2.39 -0.02 0.41 16 50 H 0.00 0.22 7.50 -2.38 -0.02 0.21 16 51 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 52 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 53 H 0.03 1.30 8.07 -2.38 -0.02 1.28 16 54 H 0.10 0.80 8.04 -2.39 -0.02 0.79 16 55 H 0.07 0.94 7.94 -2.39 -0.02 0.92 16 Total: -1.00 -78.07 426.56 1.78 -76.29 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.05 Total: 12.41 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 6.05 Total: 1.35 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -4.70 Total: -111.59 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -1.64 Total: -27.99 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -78.07 1.78 -76.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481459562.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.874 kcal (2) G-P(sol) polarization free energy of solvation -78.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds