Wall clock time and date at job start Tue Mar 31 2020 22:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 110.43314 * 2 1 4 4 C 1.54098 * 110.49018 * 122.54811 * 2 1 3 5 5 O 1.43737 * 107.29352 * 120.71105 * 4 2 1 6 6 C 1.44384 * 106.97560 * 333.48034 * 5 4 2 7 7 H 1.09001 * 110.62196 * 281.40925 * 6 5 4 8 8 C 1.52997 * 110.61840 * 158.56325 * 6 5 4 9 9 C 1.53000 * 109.47102 * 68.58475 * 8 6 5 10 10 C 1.50697 * 109.47289 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00029 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99802 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99462 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46637 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46993 * 179.97438 * 14 13 12 16 16 H 1.09005 * 110.77671 * 51.75788 * 15 14 13 17 17 C 1.55156 * 110.71903 * 174.99405 * 15 14 13 18 18 C 1.54906 * 101.61451 * 153.84569 * 17 15 14 19 19 N 1.47471 * 104.81210 * 323.04512 * 18 17 15 20 20 C 1.36937 * 125.62509 * 204.14198 * 19 18 17 21 21 H 1.08004 * 119.99479 * 179.91598 * 20 19 18 22 22 C 1.38806 * 120.00537 * 359.91425 * 20 19 18 23 23 N 1.31628 * 120.00035 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00199 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47376 * 90.00011 * 24 22 20 26 26 H 1.48499 * 109.46835 * 210.00000 * 24 22 20 27 27 H 1.48494 * 109.47029 * 329.99798 * 24 22 20 28 28 C 1.47017 * 108.71970 * 24.07007 * 19 18 17 29 29 C 1.54987 * 110.34334 * 237.31084 * 2 1 3 30 30 H 1.09005 * 109.47480 * 298.90669 * 1 2 3 31 31 H 1.09002 * 109.47303 * 58.90212 * 1 2 3 32 32 H 1.09005 * 109.47227 * 178.90551 * 1 2 3 33 33 H 1.08999 * 109.47216 * 181.08701 * 3 2 1 34 34 H 1.08995 * 109.47522 * 301.09436 * 3 2 1 35 35 H 1.09005 * 109.46736 * 61.09370 * 3 2 1 36 36 H 1.08999 * 109.87397 * 1.27985 * 4 2 1 37 37 H 1.09001 * 109.99945 * 240.20539 * 4 2 1 38 38 H 1.08995 * 109.47278 * 308.58603 * 8 6 5 39 39 H 1.09005 * 109.47521 * 188.58520 * 8 6 5 40 40 H 1.09002 * 109.47136 * 59.99576 * 9 8 6 41 41 H 1.09003 * 109.47441 * 300.00166 * 9 8 6 42 42 H 0.96990 * 120.00184 * 359.97438 * 12 10 9 43 43 H 1.08995 * 109.47436 * 60.00043 * 13 12 10 44 44 H 1.09000 * 109.47280 * 299.99436 * 13 12 10 45 45 H 1.08995 * 109.47465 * 59.99703 * 14 13 12 46 46 H 1.08998 * 109.47005 * 299.99319 * 14 13 12 47 47 H 1.09002 * 111.00677 * 271.94153 * 17 15 14 48 48 H 1.09002 * 111.00564 * 35.75411 * 17 15 14 49 49 H 1.09008 * 110.36753 * 81.85112 * 18 17 15 50 50 H 1.09001 * 110.37094 * 204.16995 * 18 17 15 51 51 H 0.96994 * 120.00079 * 179.97438 * 23 22 20 52 52 H 1.08998 * 109.88206 * 239.55467 * 28 19 18 53 53 H 1.09004 * 110.01118 * 118.46560 * 28 19 18 54 54 H 1.09002 * 110.84298 * 143.89626 * 29 2 1 55 55 H 1.09002 * 111.04374 * 20.24126 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0641 1.4338 0.0000 4 6 2.0694 -0.7766 1.2168 5 8 2.8755 -1.8546 0.7125 6 6 2.3781 -2.1723 -0.6051 7 1 1.4714 -2.7736 -0.5385 8 6 3.4465 -2.9002 -1.4233 9 6 3.6807 -4.2921 -0.8327 10 6 4.7335 -5.0089 -1.6382 11 8 5.2457 -4.4607 -2.5910 12 7 5.1051 -6.2596 -1.3002 13 6 6.1290 -6.9562 -2.0829 14 6 6.3621 -8.3486 -1.4931 15 6 7.4310 -9.0764 -2.3109 16 1 8.3236 -8.4598 -2.4165 17 6 7.7810 -10.4428 -1.6644 18 6 8.2741 -11.2508 -2.8906 19 7 7.4062 -10.8177 -4.0014 20 6 7.1347 -11.5426 -5.1309 21 1 6.4822 -11.1362 -5.8895 22 6 7.6982 -12.7997 -5.3011 23 7 8.4939 -13.2948 -4.3768 24 14 7.3285 -13.7882 -6.8423 25 1 8.3336 -13.4695 -7.8879 26 1 7.3859 -15.2380 -6.5261 27 1 5.9720 -13.4431 -7.3382 28 6 6.8793 -9.4799 -3.6945 29 6 2.0688 -0.7848 -1.2230 30 1 -0.3634 0.4968 0.8996 31 1 -0.3634 0.5308 -0.8800 32 1 -0.3634 -1.0275 -0.0196 33 1 3.1538 1.4156 -0.0195 34 1 1.6937 1.9596 -0.8799 35 1 1.7254 1.9476 0.8997 36 1 1.2391 -1.1757 1.7994 37 1 2.6766 -0.1194 1.8392 38 1 4.3762 -2.3321 -1.3942 39 1 3.1111 -2.9955 -2.4561 40 1 2.7509 -4.8603 -0.8618 41 1 4.0161 -4.1969 0.2000 42 1 4.6951 -6.6981 -0.5384 43 1 7.0586 -6.3880 -2.0525 44 1 5.7946 -7.0510 -3.1160 45 1 5.4323 -8.9166 -1.5238 46 1 6.6963 -8.2542 -0.4599 47 1 8.5737 -10.3332 -0.9242 48 1 6.8977 -10.9036 -1.2224 49 1 9.3154 -11.0126 -3.1081 50 1 8.1581 -12.3198 -2.7122 51 1 8.8874 -14.1734 -4.4955 52 1 5.7901 -9.5081 -3.6654 53 1 7.2114 -8.7662 -4.4485 54 1 2.9753 -0.3215 -1.6125 55 1 1.3099 -0.8660 -2.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481459567.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:30 Heat of formation + Delta-G solvation = -110.552366 kcal Electronic energy + Delta-G solvation = -28842.890995 eV Core-core repulsion = 24878.279399 eV Total energy + Delta-G solvation = -3964.611596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.07313 -40.54735 -39.40194 -36.50219 -35.71484 -34.74823 -34.43768 -32.51333 -30.88209 -30.13912 -28.25299 -28.15476 -26.94177 -26.58714 -25.23753 -23.44838 -22.11014 -21.87760 -21.49741 -20.65230 -20.18420 -18.89256 -18.01394 -17.49409 -17.07855 -16.81410 -16.69343 -16.42377 -16.35943 -15.87601 -15.56757 -15.18535 -14.93959 -14.52069 -14.49404 -14.30294 -14.26617 -13.87232 -13.79505 -13.65996 -13.48068 -13.33350 -13.06678 -12.97824 -12.83245 -12.68144 -12.66740 -12.39658 -12.24500 -12.21225 -12.04051 -12.00046 -11.78110 -11.59802 -11.56724 -11.54811 -11.43121 -11.38498 -11.25747 -10.80102 -10.73085 -10.52156 -10.05896 -8.87998 -7.77875 -5.22256 1.44938 1.47145 1.55946 1.68476 2.24339 2.49096 2.93532 3.30995 3.46368 3.68710 3.74520 3.75991 3.84044 3.89435 3.94094 3.98417 4.14207 4.17965 4.30959 4.31392 4.36137 4.37757 4.46836 4.55669 4.64161 4.70655 4.73156 4.73683 4.77247 4.77824 4.80629 4.82660 4.89879 4.97895 5.01659 5.04278 5.07187 5.12137 5.12901 5.19657 5.22967 5.26384 5.28246 5.31494 5.42062 5.43612 5.49940 5.51669 5.69022 5.83373 6.01779 6.31955 6.61199 7.11306 7.31231 7.79262 8.43281 9.23828 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028707 B = 0.001455 C = 0.001415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.124438 B =19245.474846 C =19784.237499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 C -0.137 4.137 4 C 0.050 3.950 5 O -0.394 6.394 6 C 0.079 3.921 7 H 0.085 0.915 8 C -0.094 4.094 9 C -0.128 4.128 10 C 0.505 3.495 11 O -0.592 6.592 12 N -0.718 5.718 13 C 0.123 3.877 14 C -0.099 4.099 15 C -0.085 4.085 16 H 0.076 0.924 17 C -0.121 4.121 18 C 0.149 3.851 19 N -0.629 5.629 20 C -0.243 4.243 21 H 0.077 0.923 22 C -0.068 4.068 23 N -0.948 5.948 24 Si 0.981 3.019 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.270 1.270 28 C 0.135 3.865 29 C -0.144 4.144 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.417 0.583 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.069 0.931 49 H -0.018 1.018 50 H 0.072 0.928 51 H 0.247 0.753 52 H 0.026 0.974 53 H 0.009 0.991 54 H 0.069 0.931 55 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.547 27.272 16.037 36.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.194 4.194 4 C -0.027 4.027 5 O -0.314 6.314 6 C 0.022 3.978 7 H 0.103 0.897 8 C -0.132 4.132 9 C -0.167 4.167 10 C 0.293 3.707 11 O -0.473 6.473 12 N -0.371 5.371 13 C -0.001 4.001 14 C -0.137 4.137 15 C -0.105 4.105 16 H 0.095 0.905 17 C -0.160 4.160 18 C 0.024 3.976 19 N -0.355 5.355 20 C -0.372 4.372 21 H 0.094 0.906 22 C -0.260 4.260 23 N -0.598 5.598 24 Si 0.809 3.191 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.195 1.195 28 C 0.010 3.990 29 C -0.181 4.181 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.255 0.745 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.115 0.885 47 H 0.104 0.896 48 H 0.087 0.913 49 H 0.000 1.000 50 H 0.090 0.910 51 H 0.057 0.943 52 H 0.044 0.956 53 H 0.027 0.973 54 H 0.088 0.912 55 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.976 27.366 15.381 35.688 hybrid contribution 0.147 -0.850 -1.031 1.345 sum -16.829 26.516 14.349 34.528 Atomic orbital electron populations 1.21869 0.92419 1.02344 1.02771 1.21981 0.97164 0.96464 0.94368 1.21840 1.00598 0.94273 1.02696 1.23435 0.95037 0.88376 0.95842 1.88855 1.57381 1.53340 1.31809 1.23197 0.96291 0.95911 0.82378 0.89689 1.21315 0.98780 0.94271 0.98883 1.21641 0.98350 0.96217 1.00532 1.21395 0.83409 0.81493 0.84418 1.90694 1.57789 1.67535 1.31286 1.45974 1.41638 1.15633 1.33819 1.21254 0.91159 0.92747 0.94974 1.21623 0.98904 0.93093 1.00054 1.22021 0.98484 0.96228 0.93750 0.90528 1.22879 1.01212 0.94820 0.97073 1.21776 0.90372 0.99743 0.85719 1.44875 1.54845 1.15723 1.20068 1.19467 1.23629 0.97753 0.96316 0.90554 1.25640 0.99841 0.98741 1.01768 1.70068 1.36596 1.18082 1.35061 0.85047 0.77971 0.77548 0.78581 1.21514 1.21578 1.19482 1.21554 0.96169 0.85954 0.95365 1.23340 1.01991 0.94804 0.97996 0.91568 0.91773 0.92240 0.93087 0.91893 0.91461 0.91443 0.89744 0.92517 0.90298 0.86303 0.87125 0.74540 0.92417 0.93506 0.90624 0.88481 0.89623 0.91275 0.99973 0.91016 0.94315 0.95569 0.97274 0.91183 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.24 71.98 0.59 -0.32 16 2 C -0.10 -0.93 0.99 -51.13 -0.05 -0.98 16 3 C -0.14 -1.16 8.28 71.98 0.60 -0.57 16 4 C 0.05 0.57 7.04 72.35 0.51 1.08 16 5 O -0.39 -6.43 10.98 -148.98 -1.64 -8.07 16 6 C 0.08 1.05 3.30 31.28 0.10 1.15 16 7 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 8 C -0.09 -1.58 4.27 30.59 0.13 -1.45 16 9 C -0.13 -1.89 5.63 29.85 0.17 -1.72 16 10 C 0.50 11.58 7.83 87.66 0.69 12.27 16 11 O -0.59 -19.47 15.98 -3.02 -0.05 -19.52 16 12 N -0.72 -14.01 5.56 -463.06 -2.57 -16.58 16 13 C 0.12 3.04 5.57 86.38 0.48 3.52 16 14 C -0.10 -2.28 4.73 30.60 0.14 -2.13 16 15 C -0.09 -2.78 2.93 -9.61 -0.03 -2.80 16 16 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 17 C -0.12 -4.34 6.53 31.98 0.21 -4.13 16 18 C 0.15 7.50 5.89 86.85 0.51 8.01 16 19 N -0.63 -33.71 3.40 -691.89 -2.35 -36.06 16 20 C -0.24 -14.16 10.27 84.03 0.86 -13.30 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 22 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 23 N -0.95 -57.68 10.09 21.65 0.22 -57.46 16 24 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 C 0.13 5.74 6.23 86.73 0.54 6.28 16 29 C -0.14 -1.65 5.71 31.96 0.18 -1.47 16 30 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 36 H 0.07 0.63 7.69 -2.39 -0.02 0.62 16 37 H 0.08 0.90 7.70 -2.39 -0.02 0.89 16 38 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 39 H 0.08 1.39 8.10 -2.38 -0.02 1.38 16 40 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.11 1.43 7.99 -2.39 -0.02 1.41 16 42 H 0.42 5.14 8.47 -92.72 -0.79 4.35 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.05 1.40 7.68 -2.39 -0.02 1.38 16 45 H 0.08 1.72 7.93 -2.39 -0.02 1.70 16 46 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 48 H 0.07 2.36 8.05 -2.39 -0.02 2.34 16 49 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 50 H 0.07 4.10 5.88 -2.39 -0.01 4.08 16 51 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 52 H 0.03 1.09 7.68 -2.39 -0.02 1.08 16 53 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 54 H 0.07 0.95 7.79 -2.39 -0.02 0.94 16 55 H 0.09 0.85 7.86 -2.39 -0.02 0.83 16 Total: -1.00 -75.81 426.85 1.79 -74.02 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.05 Total: 14.93 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 6.11 Total: -0.05 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -4.70 Total: -110.10 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -1.68 Total: -27.59 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -75.81 1.79 -74.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481459567.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.533 kcal (2) G-P(sol) polarization free energy of solvation -75.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds