Wall clock time and date at job start Tue Mar 31 2020 21:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99961 * 2 1 4 4 H 1.48490 * 109.47442 * 269.99914 * 3 2 1 5 5 H 1.48500 * 109.46948 * 29.99892 * 3 2 1 6 6 H 1.48497 * 109.47050 * 149.99390 * 3 2 1 7 7 C 1.38811 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99954 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00006 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00014 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46958 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46758 * 179.97438 * 11 10 9 13 13 C 1.53046 * 109.45764 * 64.93746 * 12 11 10 14 14 C 1.53193 * 109.31028 * 181.38233 * 13 12 11 15 15 N 1.46927 * 108.77663 * 305.36644 * 14 13 12 16 16 C 1.34778 * 120.62805 * 233.63128 * 15 14 13 17 17 O 1.21285 * 120.00278 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00102 * 359.97438 * 16 15 14 19 19 C 1.52996 * 109.47245 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.47194 * 179.97438 * 19 18 16 21 21 H 1.08997 * 109.48439 * 305.02041 * 20 19 18 22 22 C 1.53094 * 109.48025 * 184.99837 * 20 19 18 23 23 C 1.53177 * 109.16242 * 182.40907 * 22 20 19 24 24 C 1.53172 * 109.03591 * 56.98218 * 23 22 20 25 25 C 1.53089 * 109.16498 * 303.01815 * 24 23 22 26 26 O 1.42905 * 109.41427 * 57.61137 * 25 24 23 27 27 C 1.46919 * 118.74179 * 53.60344 * 15 14 13 28 28 C 1.53046 * 109.45870 * 185.00055 * 12 11 10 29 29 H 0.97005 * 120.00443 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00030 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.46953 * 60.00112 * 10 9 7 32 32 H 1.08996 * 109.47402 * 299.99825 * 10 9 7 33 33 H 1.09003 * 109.46828 * 60.00488 * 11 10 9 34 34 H 1.08996 * 109.47291 * 300.00346 * 11 10 9 35 35 H 1.08993 * 109.45354 * 304.96670 * 12 11 10 36 36 H 1.09001 * 109.49347 * 301.33272 * 13 12 11 37 37 H 1.08998 * 109.49687 * 61.42973 * 13 12 11 38 38 H 1.09000 * 109.58615 * 185.57833 * 14 13 12 39 39 H 1.08998 * 109.58446 * 65.14816 * 14 13 12 40 40 H 1.09000 * 109.46874 * 299.99970 * 18 16 15 41 41 H 1.08997 * 109.47596 * 59.99862 * 18 16 15 42 42 H 1.09000 * 109.47218 * 299.99831 * 19 18 16 43 43 H 1.09004 * 109.47212 * 60.00094 * 19 18 16 44 44 H 1.08991 * 109.52355 * 302.31841 * 22 20 19 45 45 H 1.09002 * 109.52388 * 62.44269 * 22 20 19 46 46 H 1.09004 * 109.54611 * 176.85149 * 23 22 20 47 47 H 1.09001 * 109.54746 * 297.11581 * 23 22 20 48 48 H 1.09003 * 109.52343 * 62.92679 * 24 23 22 49 49 H 1.09003 * 109.52150 * 183.04731 * 24 23 22 50 50 H 1.09002 * 109.47792 * 177.58852 * 25 24 23 51 51 H 1.08995 * 109.48065 * 297.62407 * 25 24 23 52 52 H 1.09002 * 109.59216 * 186.60571 * 27 15 14 53 53 H 1.09004 * 109.70105 * 66.25262 * 27 15 14 54 54 H 1.09004 * 109.49895 * 298.56921 * 28 12 11 55 55 H 1.08995 * 109.49246 * 58.66274 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.3999 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8289 -6.1447 0.0005 13 6 2.6142 -6.2806 1.3071 14 6 3.4060 -7.5919 1.2883 15 7 2.4788 -8.7004 1.0233 16 6 2.4254 -9.7635 1.8502 17 8 1.6554 -10.6721 1.6209 18 6 3.3224 -9.8232 3.0596 19 6 3.0638 -11.1238 3.8227 20 6 3.9750 -11.1847 5.0503 21 1 5.0124 -11.0620 4.7394 22 6 3.8068 -12.5389 5.7442 23 6 4.6763 -12.5693 7.0049 24 6 4.2831 -11.3988 7.9113 25 6 4.4329 -10.0887 7.1337 26 8 3.6222 -10.1388 5.9580 27 6 1.6105 -8.6279 -0.1596 28 6 0.8389 -7.3050 -0.1246 29 1 -0.4851 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.6848 -3.7145 0.8906 32 1 2.6848 -3.7146 -0.8894 33 1 0.4369 -4.7621 -0.8887 34 1 0.4375 -4.7617 0.8913 35 1 2.5199 -6.1645 -0.8422 36 1 3.3025 -5.4413 1.4068 37 1 1.9217 -6.2858 2.1489 38 1 3.8880 -7.7416 2.2544 39 1 4.1610 -7.5516 0.5031 40 1 4.3643 -9.7893 2.7412 41 1 3.1133 -8.9734 3.7094 42 1 2.0219 -11.1572 4.1412 43 1 3.2726 -11.9739 3.1731 44 1 2.7616 -12.6800 6.0191 45 1 4.1163 -13.3358 5.0679 46 1 4.5188 -13.5092 7.5340 47 1 5.7261 -12.4779 6.7262 48 1 3.2475 -11.5169 8.2301 49 1 4.9336 -11.3809 8.7858 50 1 4.1135 -9.2557 7.7601 51 1 5.4763 -9.9514 6.8503 52 1 0.9079 -9.4612 -0.1490 53 1 2.2173 -8.6731 -1.0641 54 1 0.1631 -7.3006 0.7307 55 1 0.2637 -7.1948 -1.0438 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482005323.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:54 Heat of formation + Delta-G solvation = -126.560380 kcal Electronic energy + Delta-G solvation = -29548.721205 eV Core-core repulsion = 25583.415449 eV Total energy + Delta-G solvation = -3965.305755 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.31904 -40.30596 -39.00323 -36.87074 -35.09281 -34.91108 -34.51864 -33.05104 -32.20350 -30.93726 -29.83421 -27.18725 -26.22641 -24.98097 -24.32470 -24.25237 -22.86206 -22.13579 -21.29747 -21.10986 -19.79520 -19.12008 -18.18213 -17.50080 -16.99324 -16.67181 -16.63281 -16.51064 -15.85520 -15.54573 -15.47659 -15.42917 -15.31239 -15.01674 -14.78756 -14.62698 -14.51232 -14.25573 -14.03429 -13.65299 -13.56924 -13.25857 -13.03857 -12.99974 -12.84282 -12.70919 -12.50426 -12.27515 -12.19018 -12.14000 -12.10208 -12.06551 -11.94517 -11.83848 -11.62188 -11.56351 -11.35357 -11.18850 -11.15581 -10.87790 -10.74572 -10.31523 -9.62609 -8.98389 -7.94681 -5.23765 1.47571 1.49854 1.58283 1.63456 2.04772 2.56744 2.87495 3.38959 3.47896 3.70022 3.73828 3.80675 3.88007 3.95147 3.98994 4.05006 4.14754 4.15469 4.21444 4.31988 4.35336 4.36470 4.41056 4.46474 4.52962 4.58737 4.63846 4.64461 4.69536 4.77092 4.80980 4.85527 4.88301 4.91767 4.94233 4.99119 5.01597 5.07192 5.10191 5.11914 5.14963 5.19872 5.23583 5.28904 5.30906 5.41591 5.42255 5.50164 5.56694 5.62572 6.27896 6.36869 6.43554 7.17951 7.33288 8.11251 8.33056 9.29156 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.001868 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.540011 B =14987.928356 C =16584.162093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.751 5.751 10 C 0.151 3.849 11 C -0.109 4.109 12 C -0.073 4.073 13 C -0.131 4.131 14 C 0.109 3.891 15 N -0.611 5.611 16 C 0.509 3.491 17 O -0.590 6.590 18 C -0.130 4.130 19 C -0.091 4.091 20 C 0.092 3.908 21 H 0.075 0.925 22 C -0.152 4.152 23 C -0.122 4.122 24 C -0.157 4.157 25 C 0.055 3.945 26 O -0.401 6.401 27 C 0.113 3.887 28 C -0.122 4.122 29 H 0.251 0.749 30 H 0.371 0.629 31 H 0.028 0.972 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.087 0.913 50 H 0.096 0.904 51 H 0.061 0.939 52 H 0.075 0.925 53 H 0.083 0.917 54 H 0.051 0.949 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.632 -28.327 11.318 33.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.394 5.394 10 C 0.025 3.975 11 C -0.147 4.147 12 C -0.092 4.092 13 C -0.169 4.169 14 C -0.013 4.013 15 N -0.344 5.344 16 C 0.299 3.701 17 O -0.471 6.471 18 C -0.169 4.169 19 C -0.129 4.129 20 C 0.035 3.965 21 H 0.092 0.908 22 C -0.190 4.190 23 C -0.159 4.159 24 C -0.195 4.195 25 C -0.022 4.022 26 O -0.320 6.320 27 C -0.010 4.010 28 C -0.160 4.160 29 H 0.059 0.941 30 H 0.203 0.797 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.136 0.864 41 H 0.122 0.878 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.078 0.922 49 H 0.105 0.895 50 H 0.115 0.885 51 H 0.080 0.920 52 H 0.093 0.907 53 H 0.101 0.899 54 H 0.070 0.930 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.260 -28.577 11.166 33.424 hybrid contribution -0.488 1.085 -0.007 1.190 sum 12.772 -27.492 11.159 32.303 Atomic orbital electron populations 1.69829 1.06732 1.26062 1.59664 1.25634 0.96452 1.01337 1.03816 0.85099 0.77734 0.79231 0.77466 1.21358 1.22266 1.19163 1.19682 0.91602 0.85403 1.41014 0.90414 1.42679 1.05656 1.01605 1.89429 1.20894 0.94216 0.84566 0.97778 1.21635 0.97925 0.93942 1.01188 1.21005 0.96952 0.92489 0.98774 1.22015 0.99724 0.97880 0.97289 1.21968 0.91216 0.84198 1.03927 1.48296 1.40015 1.20100 1.25945 1.21294 0.83367 0.80925 0.84483 1.90656 1.41990 1.39085 1.75352 1.21670 1.00564 1.00976 0.93724 1.21312 0.99729 0.97230 0.94663 1.22168 0.98413 0.87124 0.88826 0.90760 1.22206 1.00815 0.97684 0.98251 1.21601 0.99860 0.98842 0.95598 1.22195 1.02404 0.95508 0.99361 1.22711 0.95239 0.98051 0.86174 1.87933 1.59272 1.52574 1.32260 1.21571 0.93812 0.97799 0.87811 1.21895 0.97833 0.93689 1.02585 0.94056 0.79740 0.95422 0.96228 0.92635 0.93209 0.89870 0.89787 0.92614 0.87550 0.89265 0.86351 0.87821 0.92834 0.89831 0.92336 0.89836 0.90873 0.90835 0.92203 0.89469 0.88548 0.92046 0.90678 0.89891 0.92998 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.49 13.06 21.65 0.28 -60.20 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 3 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.75 -38.92 5.60 -343.45 -1.92 -40.84 16 10 C 0.15 5.90 6.02 86.38 0.52 6.42 16 11 C -0.11 -3.41 4.80 30.60 0.15 -3.26 16 12 C -0.07 -1.67 2.15 -10.76 -0.02 -1.70 16 13 C -0.13 -2.67 5.15 30.67 0.16 -2.51 16 14 C 0.11 1.65 6.34 86.36 0.55 2.20 16 15 N -0.61 -12.12 2.97 -818.92 -2.43 -14.56 16 16 C 0.51 11.44 7.70 87.66 0.67 12.11 16 17 O -0.59 -17.90 15.40 -3.05 -0.05 -17.95 16 18 C -0.13 -2.03 3.94 29.85 0.12 -1.91 16 19 C -0.09 -1.53 4.21 30.59 0.13 -1.40 16 20 C 0.09 1.24 2.64 30.63 0.08 1.33 16 21 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 22 C -0.15 -1.81 5.42 30.68 0.17 -1.64 16 23 C -0.12 -1.13 6.03 30.71 0.19 -0.94 16 24 C -0.16 -1.57 6.14 30.68 0.19 -1.38 16 25 C 0.05 0.64 6.84 72.01 0.49 1.13 16 26 O -0.40 -6.78 9.94 -148.98 -1.48 -8.27 16 27 C 0.11 2.31 6.43 86.36 0.56 2.86 16 28 C -0.12 -2.64 5.36 30.67 0.16 -2.47 16 29 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 30 H 0.37 20.62 7.67 -92.70 -0.71 19.91 16 31 H 0.03 1.05 6.53 -2.39 -0.02 1.03 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.75 6.50 -2.39 -0.02 1.74 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 1.20 5.93 -2.39 -0.01 1.18 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.12 1.18 7.94 -2.39 -0.02 1.17 16 41 H 0.10 1.63 7.37 -2.39 -0.02 1.62 16 42 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 43 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 52 H 0.07 1.79 7.01 -2.39 -0.02 1.77 16 53 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 54 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 55 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -72.76 420.35 1.96 -70.80 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.13 Total: 31.07 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 5.41 Total: -8.40 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -4.08 Total: -115.60 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -1.53 Total: -26.21 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -72.76 1.96 -70.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482005323.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.760 kcal (2) G-P(sol) polarization free energy of solvation -72.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds