Wall clock time and date at job start Tue Mar 31 2020 20:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99567 * 2 1 4 4 H 1.48502 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47550 * 299.99932 * 3 2 1 6 6 H 1.48504 * 109.47363 * 60.00490 * 3 2 1 7 7 C 1.38815 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99498 * 157.52773 * 7 2 1 9 9 N 1.36934 * 119.99864 * 337.51818 * 7 2 1 10 10 C 1.46501 * 120.00276 * 326.32355 * 9 7 2 11 11 C 1.53000 * 109.46856 * 265.51076 * 10 9 7 12 12 N 1.46501 * 109.46856 * 179.97438 * 11 10 9 13 13 C 1.34781 * 119.99910 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99568 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00111 * 179.97438 * 13 12 11 16 16 C 1.52994 * 109.47326 * 180.02562 * 15 13 12 17 17 H 1.09003 * 109.82519 * 305.70242 * 16 15 13 18 18 C 1.54386 * 109.83541 * 184.81471 * 16 15 13 19 19 C 1.55450 * 102.18858 * 219.18258 * 18 16 15 20 20 C 1.54950 * 100.98902 * 34.03429 * 19 18 16 21 21 O 1.43242 * 109.83220 * 66.58487 * 16 15 13 22 22 C 1.46503 * 119.99800 * 146.31910 * 9 7 2 23 23 C 1.50483 * 109.78966 * 300.48947 * 22 9 7 24 24 C 1.54059 * 112.49748 * 213.95250 * 23 22 9 25 25 C 1.54061 * 112.82113 * 318.28552 * 24 23 22 26 26 C 1.50474 * 112.49849 * 318.28296 * 25 24 23 27 27 C 1.54242 * 108.52459 * 94.14790 * 26 25 24 28 28 C 1.45543 * 112.40676 * 280.01854 * 27 26 25 29 29 H 0.96996 * 120.00202 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47241 * 25.51281 * 10 9 7 31 31 H 1.09006 * 109.46867 * 145.51268 * 10 9 7 32 32 H 1.09000 * 109.47237 * 299.99666 * 11 10 9 33 33 H 1.08994 * 109.46952 * 60.00059 * 11 10 9 34 34 H 0.97001 * 120.00220 * 0.02562 * 12 11 10 35 35 H 1.09005 * 109.47686 * 300.00371 * 15 13 12 36 36 H 1.08996 * 109.47394 * 59.99903 * 15 13 12 37 37 H 1.08999 * 110.84013 * 337.32108 * 18 16 15 38 38 H 1.08998 * 110.84358 * 100.93609 * 18 16 15 39 39 H 1.09001 * 111.05565 * 276.12053 * 19 18 16 40 40 H 1.08993 * 111.18360 * 152.00628 * 19 18 16 41 41 H 1.08997 * 110.30821 * 204.69000 * 20 19 18 42 42 H 1.09000 * 110.30190 * 82.52381 * 20 19 18 43 43 H 1.08992 * 109.63150 * 180.02562 * 22 9 7 44 44 H 1.08997 * 108.87182 * 334.73824 * 23 22 9 45 45 H 1.09000 * 108.87079 * 93.17643 * 23 22 9 46 46 H 1.08997 * 108.81267 * 197.42370 * 24 23 22 47 47 H 1.09000 * 108.72491 * 79.08778 * 24 23 22 48 48 H 1.09000 * 108.88216 * 197.50379 * 25 24 23 49 49 H 1.09004 * 108.79839 * 79.00398 * 25 24 23 50 50 H 1.09001 * 109.62718 * 334.44019 * 26 25 24 51 51 H 1.08992 * 109.78980 * 213.95354 * 26 25 24 52 52 H 1.08994 * 108.89518 * 159.26590 * 27 26 25 53 53 H 1.09000 * 108.81688 * 40.71310 * 27 26 25 54 54 H 1.09003 * 108.89443 * 301.18271 * 28 27 26 55 55 H 1.08996 * 108.89882 * 182.69130 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0288 -1.2374 -0.3581 9 7 1.4037 -2.3432 0.4524 10 6 0.4325 -2.2715 1.5469 11 6 1.1406 -2.5439 2.8756 12 7 0.1696 -2.4716 3.9702 13 6 0.5693 -2.6796 5.2404 14 8 1.7329 -2.9261 5.4773 15 6 -0.4294 -2.6047 6.3664 16 6 0.2786 -2.8772 7.6951 17 1 0.8126 -3.8259 7.6417 18 6 -0.7558 -2.9222 8.8403 19 6 -0.0027 -2.1982 9.9914 20 6 0.8167 -1.1511 9.1957 21 8 1.1986 -1.8173 7.9817 22 6 1.7258 -3.6356 -0.1576 23 6 1.3965 -3.6023 -1.6256 24 6 0.9015 -4.9638 -2.1497 25 6 1.7090 -6.1497 -1.5882 26 6 3.1875 -5.8726 -1.5492 27 6 3.5485 -5.3346 -0.1495 28 6 3.2333 -3.9216 0.0000 29 1 -0.4850 0.8400 0.0004 30 1 -0.0153 -1.2781 1.5708 31 1 -0.3466 -3.0177 1.3908 32 1 1.5884 -3.5373 2.8517 33 1 1.9197 -1.7978 3.0317 34 1 -0.7612 -2.2748 3.7807 35 1 -0.8762 -1.6107 6.3904 36 1 -1.2094 -3.3499 6.2105 37 1 -1.6606 -2.3791 8.5671 38 1 -0.9874 -3.9516 9.1134 39 1 0.6525 -2.8870 10.5247 40 1 -0.7000 -1.7143 10.6752 41 1 1.7014 -0.8553 9.7594 42 1 0.2011 -0.2800 8.9717 43 1 1.1506 -4.4235 0.3285 44 1 0.6211 -2.8556 -1.7961 45 1 2.2892 -3.3141 -2.1807 46 1 0.9773 -4.9705 -3.2370 47 1 -0.1447 -5.0871 -1.8700 48 1 1.5306 -7.0251 -2.2126 49 1 1.3633 -6.3623 -0.5765 50 1 3.4405 -5.1281 -2.3041 51 1 3.7404 -6.7919 -1.7419 52 1 4.6157 -5.4779 0.0193 53 1 2.9939 -5.9010 0.5987 54 1 3.7806 -3.3561 -0.7542 55 1 3.5539 -3.5910 0.9879 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483815597.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:47 Heat of formation + Delta-G solvation = -104.367057 kcal Electronic energy + Delta-G solvation = -30811.223905 eV Core-core repulsion = 26846.880524 eV Total energy + Delta-G solvation = -3964.343381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.02937 -40.10285 -39.71272 -37.25673 -35.45491 -33.53651 -33.36821 -33.19330 -32.61757 -31.45014 -29.37213 -27.49926 -26.29842 -25.28497 -24.57924 -22.92688 -22.45060 -22.16674 -21.37705 -21.09043 -20.10886 -18.36387 -18.00331 -17.62308 -17.13395 -17.08045 -16.62173 -16.32731 -16.19966 -15.73735 -15.44781 -15.33680 -15.22810 -14.86649 -14.71128 -14.49781 -14.15917 -14.01168 -13.83197 -13.80510 -13.37567 -13.12341 -12.89546 -12.87062 -12.81167 -12.58064 -12.55630 -12.30466 -12.16220 -12.12516 -12.02226 -11.92487 -11.67694 -11.55680 -11.52004 -11.40934 -11.19541 -11.01585 -10.87353 -10.75072 -10.49067 -10.47457 -9.98022 -8.58023 -7.83561 -5.37290 1.40288 1.46056 1.53869 1.75709 2.27963 2.52792 2.98690 3.25299 3.57177 3.62314 3.78944 3.85491 3.94079 4.01034 4.02432 4.21349 4.23477 4.30103 4.37179 4.41319 4.43029 4.47263 4.50866 4.56611 4.61912 4.63958 4.75260 4.76435 4.79698 4.82828 4.84842 4.93152 5.00433 5.00505 5.08325 5.11363 5.20263 5.24127 5.28762 5.31535 5.38200 5.45404 5.46538 5.51915 5.53951 5.65608 5.67924 5.71571 5.73393 5.85560 6.22657 6.48852 6.69407 7.18243 7.38843 7.89907 8.38723 9.14353 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010147 B = 0.002997 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.832071 B = 9339.260818 C =11128.372139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.031 4.031 3 Si 0.940 3.060 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.247 4.247 8 H 0.051 0.949 9 N -0.590 5.590 10 C 0.145 3.855 11 C 0.122 3.878 12 N -0.718 5.718 13 C 0.501 3.499 14 O -0.587 6.587 15 C -0.143 4.143 16 C 0.088 3.912 17 H 0.065 0.935 18 C -0.141 4.141 19 C -0.148 4.148 20 C 0.032 3.968 21 O -0.405 6.405 22 C 0.180 3.820 23 C -0.110 4.110 24 C -0.108 4.108 25 C -0.112 4.112 26 C -0.112 4.112 27 C -0.108 4.108 28 C -0.117 4.117 29 H 0.251 0.749 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.022 0.978 34 H 0.411 0.589 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.033 0.967 45 H 0.039 0.961 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.075 0.925 49 H 0.056 0.944 50 H 0.055 0.945 51 H 0.079 0.921 52 H 0.060 0.940 53 H 0.058 0.942 54 H 0.039 0.961 55 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 -10.550 12.287 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.228 4.228 3 Si 0.769 3.231 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.378 4.378 8 H 0.069 0.931 9 N -0.309 5.309 10 C 0.018 3.982 11 C -0.005 4.005 12 N -0.370 5.370 13 C 0.289 3.711 14 O -0.467 6.467 15 C -0.182 4.182 16 C 0.030 3.970 17 H 0.083 0.917 18 C -0.178 4.178 19 C -0.186 4.186 20 C -0.044 4.044 21 O -0.325 6.325 22 C 0.074 3.926 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.150 4.150 26 C -0.149 4.149 27 C -0.146 4.146 28 C -0.156 4.156 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.247 0.753 35 H 0.129 0.871 36 H 0.157 0.843 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.098 0.902 52 H 0.078 0.922 53 H 0.077 0.923 54 H 0.058 0.942 55 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.924 -10.538 12.278 16.912 hybrid contribution 0.260 1.621 -0.230 1.658 sum -4.664 -8.916 12.047 15.697 Atomic orbital electron populations 1.70061 1.06078 1.25629 1.53665 1.25504 0.95630 1.00483 1.01217 0.85637 0.78955 0.81664 0.76801 1.20179 1.21584 1.21987 1.19089 0.94333 0.86871 1.37492 0.93123 1.44013 1.49103 1.02730 1.35084 1.20954 0.90760 1.02465 0.84070 1.21804 0.92081 0.98611 0.87956 1.46024 1.13133 1.71724 1.06157 1.21443 0.89800 0.75431 0.84459 1.90679 1.21380 1.50113 1.84520 1.22208 0.97762 1.06699 0.91576 1.22601 0.90167 0.90584 0.93694 0.91713 1.23229 0.98082 1.03618 0.92895 1.23278 0.99442 0.97792 0.98050 1.23631 0.99693 0.95976 0.85071 1.88616 1.52096 1.48394 1.43439 1.20219 0.93473 0.86530 0.92376 1.21627 0.99721 0.96560 0.96977 1.21857 0.99122 0.93619 1.00003 1.21312 0.94920 0.97425 1.01320 1.21309 0.96366 1.01012 0.96212 1.20429 1.01006 0.95230 0.97962 1.20785 0.97967 0.97042 0.99817 0.93980 0.90029 0.94357 0.94193 0.95977 0.75262 0.87076 0.84278 0.88352 0.87978 0.90370 0.87505 0.89927 0.91770 0.92433 0.94803 0.94206 0.92016 0.92863 0.90613 0.92522 0.92601 0.90235 0.92158 0.92348 0.94237 0.94931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.89 11.32 21.65 0.25 -50.65 16 2 C -0.03 -1.71 4.92 84.86 0.42 -1.29 16 3 Si 0.94 45.31 29.61 68.60 2.03 47.34 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 7 C -0.25 -13.34 8.52 84.03 0.72 -12.63 16 8 H 0.05 2.82 7.34 -2.91 -0.02 2.80 16 9 N -0.59 -28.41 2.28 -680.24 -1.55 -29.96 16 10 C 0.14 6.53 5.31 86.38 0.46 6.99 16 11 C 0.12 5.21 6.00 86.38 0.52 5.73 16 12 N -0.72 -24.52 5.56 -463.07 -2.57 -27.09 16 13 C 0.50 17.23 7.73 87.65 0.68 17.90 16 14 O -0.59 -26.26 15.49 8.69 0.13 -26.13 16 15 C -0.14 -3.14 5.27 29.84 0.16 -2.99 16 16 C 0.09 2.04 3.04 31.06 0.09 2.13 16 17 H 0.06 1.74 7.94 -2.39 -0.02 1.72 16 18 C -0.14 -1.84 6.56 31.91 0.21 -1.63 16 19 C -0.15 -1.94 7.16 32.10 0.23 -1.71 16 20 C 0.03 0.65 7.78 72.65 0.57 1.21 16 21 O -0.41 -12.26 10.37 -137.25 -1.42 -13.69 16 22 C 0.18 7.31 2.31 44.60 0.10 7.41 16 23 C -0.11 -4.27 4.48 30.14 0.13 -4.14 16 24 C -0.11 -3.19 5.85 31.31 0.18 -3.01 16 25 C -0.11 -2.77 5.32 30.14 0.16 -2.61 16 26 C -0.11 -2.80 5.61 30.20 0.17 -2.63 16 27 C -0.11 -3.18 5.26 28.74 0.15 -3.02 16 28 C -0.12 -4.41 4.18 28.74 0.12 -4.29 16 29 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 30 H 0.08 4.16 5.32 -2.39 -0.01 4.15 16 31 H 0.04 1.60 8.02 -2.38 -0.02 1.58 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.41 11.37 8.47 -92.71 -0.79 10.59 16 35 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.10 0.94 7.85 -2.39 -0.02 0.92 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 2.23 6.69 -2.39 -0.02 2.21 16 44 H 0.03 1.57 7.88 -2.39 -0.02 1.56 16 45 H 0.04 1.59 6.63 -2.39 -0.02 1.57 16 46 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.06 1.43 6.62 -2.39 -0.02 1.42 16 50 H 0.06 1.52 6.98 -2.39 -0.02 1.51 16 51 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 53 H 0.06 1.66 7.46 -2.39 -0.02 1.64 16 54 H 0.04 1.58 7.17 -2.39 -0.02 1.56 16 55 H 0.03 1.36 8.12 -2.39 -0.02 1.34 16 Total: -1.00 -72.19 416.05 1.99 -70.20 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.06 Total: 28.54 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 5.07 Total: 1.43 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -3.88 Total: -107.70 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -1.29 Total: -39.81 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -72.19 1.99 -70.20 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483815597.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.168 kcal (2) G-P(sol) polarization free energy of solvation -72.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds