Wall clock time and date at job start Tue Mar 31 2020 20:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00020 * 2 1 4 4 H 1.48510 * 109.46812 * 274.67398 * 3 2 1 5 5 H 1.48499 * 109.47533 * 34.67216 * 3 2 1 6 6 H 1.48502 * 109.47298 * 154.67854 * 3 2 1 7 7 C 1.38816 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99698 * 30.12621 * 7 2 1 9 9 N 1.36930 * 120.00216 * 210.12594 * 7 2 1 10 10 C 1.46499 * 120.00078 * 39.30143 * 9 7 2 11 11 C 1.53008 * 109.46971 * 95.94302 * 10 9 7 12 12 N 1.46501 * 109.47231 * 185.39412 * 11 10 9 13 13 C 1.34770 * 119.99869 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00030 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99738 * 179.72087 * 13 12 11 16 16 C 1.52998 * 109.47053 * 180.27705 * 15 13 12 17 17 H 1.09005 * 109.87137 * 53.99992 * 16 15 13 18 18 C 1.54099 * 109.87883 * 175.00241 * 16 15 13 19 19 C 1.54808 * 104.18837 * 121.45629 * 18 16 15 20 20 C 1.54997 * 102.09534 * 20.88336 * 19 18 16 21 21 O 1.43741 * 109.88401 * 292.83547 * 16 15 13 22 22 C 1.46501 * 120.00149 * 219.30595 * 9 7 2 23 23 C 1.54247 * 108.89634 * 61.39312 * 22 9 7 24 24 C 1.50551 * 108.48215 * 159.17970 * 23 22 9 25 25 C 1.54066 * 112.41438 * 94.26844 * 24 23 22 26 26 C 1.54064 * 112.81577 * 318.27794 * 25 24 23 27 27 C 1.50478 * 112.49579 * 318.28316 * 26 25 24 28 28 C 1.45542 * 108.89390 * 298.60242 * 22 9 7 29 29 H 0.96997 * 120.00113 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46911 * 335.94818 * 10 9 7 31 31 H 1.08997 * 109.47759 * 215.94055 * 10 9 7 32 32 H 1.08998 * 109.46863 * 65.39048 * 11 10 9 33 33 H 1.09004 * 109.46924 * 305.39193 * 11 10 9 34 34 H 0.96996 * 119.99636 * 359.97438 * 12 11 10 35 35 H 1.09000 * 109.47492 * 300.27959 * 15 13 12 36 36 H 1.08996 * 109.47115 * 60.28274 * 15 13 12 37 37 H 1.09009 * 110.48875 * 240.13147 * 18 16 15 38 38 H 1.08997 * 110.48933 * 2.64611 * 18 16 15 39 39 H 1.08999 * 110.90877 * 139.07911 * 19 18 16 40 40 H 1.08999 * 110.91162 * 262.64858 * 19 18 16 41 41 H 1.08991 * 110.62238 * 81.47363 * 20 19 18 42 42 H 1.09001 * 110.62230 * 204.47951 * 20 19 18 43 43 H 1.09000 * 108.87304 * 180.02562 * 22 9 7 44 44 H 1.08993 * 109.62454 * 278.97778 * 23 22 9 45 45 H 1.09001 * 109.62288 * 39.55299 * 23 22 9 46 46 H 1.08995 * 108.92477 * 333.51038 * 24 23 22 47 47 H 1.09006 * 108.83216 * 214.96565 * 24 23 22 48 48 H 1.09002 * 108.81289 * 197.41526 * 25 24 23 49 49 H 1.08998 * 108.72449 * 79.07759 * 25 24 23 50 50 H 1.09003 * 108.87853 * 197.51048 * 26 25 24 51 51 H 1.09000 * 108.80214 * 79.00928 * 26 25 24 52 52 H 1.09003 * 109.62638 * 334.44720 * 27 26 25 53 53 H 1.09002 * 109.78487 * 213.96183 * 27 26 25 54 54 H 1.08998 * 108.89452 * 303.44253 * 28 22 9 55 55 H 1.08995 * 108.89360 * 61.93753 * 28 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3989 2.1033 -1.3955 5 1 1.5006 2.6221 0.7964 6 1 3.5937 1.4136 0.5988 7 6 2.0103 -1.2022 0.0005 8 1 1.5796 -2.0746 -0.4686 9 7 3.2409 -1.2821 0.5957 10 6 3.4925 -0.5774 1.8553 11 6 3.2908 -1.5401 3.0273 12 7 3.4158 -0.8063 4.2891 13 6 3.2744 -1.4543 5.4623 14 8 3.0441 -2.6449 5.4735 15 6 3.4092 -0.7006 6.7603 16 6 3.2124 -1.6642 7.9323 17 1 3.8943 -2.5091 7.8359 18 6 3.4715 -0.9310 9.2627 19 6 2.1441 -1.0831 10.0447 20 6 1.4943 -2.3050 9.3468 21 8 1.8529 -2.1302 7.9591 22 6 4.3059 -2.0721 -0.0270 23 6 4.6207 -1.4793 -1.4158 24 6 5.9985 -1.9276 -1.8249 25 6 5.9686 -3.1998 -2.6932 26 6 4.9571 -4.2455 -2.1863 27 6 4.9711 -4.3807 -0.6877 28 6 3.8793 -3.4615 -0.1027 29 1 -0.4850 0.8400 -0.0004 30 1 2.7995 0.2587 1.9485 31 1 4.5163 -0.2036 1.8643 32 1 4.0462 -2.3249 2.9870 33 1 2.2987 -1.9871 2.9637 34 1 3.6003 0.1459 4.2801 35 1 4.4017 -0.2540 6.8199 36 1 2.6543 0.0844 6.8048 37 1 4.2904 -1.4034 9.8055 38 1 3.6917 0.1211 9.0819 39 1 2.3345 -1.2923 11.0973 40 1 1.5227 -0.1946 9.9328 41 1 1.9088 -3.2348 9.7360 42 1 0.4113 -2.2856 9.4687 43 1 5.1995 -2.0109 0.5942 44 1 3.8881 -1.8348 -2.1402 45 1 4.5909 -0.3909 -1.3645 46 1 6.5863 -2.1259 -0.9287 47 1 6.4761 -1.1265 -2.3892 48 1 6.9632 -3.6459 -2.6975 49 1 5.7046 -2.9211 -3.7134 50 1 5.1968 -5.2120 -2.6297 51 1 3.9573 -3.9502 -2.5045 52 1 5.9460 -4.0824 -0.3022 53 1 4.7676 -5.4145 -0.4085 54 1 3.6257 -3.8079 0.8992 55 1 2.9911 -3.5243 -0.7312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483815598.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:53 Heat of formation + Delta-G solvation = -99.491751 kcal Electronic energy + Delta-G solvation = -30781.734371 eV Core-core repulsion = 26817.602399 eV Total energy + Delta-G solvation = -3964.131972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.04598 -40.25585 -39.73926 -37.36094 -35.52555 -33.87686 -33.44065 -32.90110 -32.61251 -31.82941 -29.57224 -27.40842 -26.19989 -25.48466 -24.59912 -23.20653 -22.76800 -21.96432 -21.28947 -21.23725 -19.99353 -18.66616 -18.02959 -17.37964 -17.23557 -17.08438 -16.68312 -16.58779 -16.19531 -15.91092 -15.88760 -15.32206 -15.09793 -14.97233 -14.59447 -14.46605 -14.43034 -13.97493 -13.86477 -13.75644 -13.54230 -13.42433 -13.04203 -12.94093 -12.87919 -12.66758 -12.54715 -12.37517 -12.19396 -12.09644 -11.98113 -11.73897 -11.66452 -11.54674 -11.36222 -11.31238 -11.23422 -11.09501 -10.91613 -10.79037 -10.62282 -10.54484 -10.03440 -8.69891 -8.19657 -5.51600 1.35353 1.46236 1.54229 1.73145 2.22147 2.47572 2.99209 3.06715 3.38457 3.62541 3.78475 3.84575 3.96384 4.04497 4.04746 4.14363 4.14756 4.18937 4.26605 4.34322 4.39784 4.44059 4.51109 4.51393 4.57569 4.60431 4.64435 4.67606 4.76507 4.84081 4.85388 4.94613 4.98667 5.00056 5.00707 5.08144 5.13741 5.14513 5.18207 5.25667 5.29489 5.37464 5.42852 5.44860 5.47789 5.50537 5.63018 5.70966 5.77206 5.99064 6.07942 6.28044 6.64036 7.05377 7.35815 7.69354 8.12123 9.00864 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.002827 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.302348 B = 9902.621645 C =11218.974304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.011 4.011 3 Si 0.920 3.080 4 H -0.301 1.301 5 H -0.300 1.300 6 H -0.226 1.226 7 C -0.251 4.251 8 H 0.031 0.969 9 N -0.607 5.607 10 C 0.143 3.857 11 C 0.118 3.882 12 N -0.720 5.720 13 C 0.501 3.499 14 O -0.586 6.586 15 C -0.132 4.132 16 C 0.083 3.917 17 H 0.055 0.945 18 C -0.143 4.143 19 C -0.148 4.148 20 C 0.030 3.970 21 O -0.403 6.403 22 C 0.177 3.823 23 C -0.112 4.112 24 C -0.112 4.112 25 C -0.109 4.109 26 C -0.117 4.117 27 C -0.104 4.104 28 C -0.117 4.117 29 H 0.260 0.740 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.022 0.978 34 H 0.413 0.587 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.055 0.945 50 H 0.070 0.930 51 H 0.038 0.962 52 H 0.077 0.923 53 H 0.063 0.937 54 H 0.034 0.966 55 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.649 0.789 14.257 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.747 3.253 4 H -0.229 1.229 5 H -0.227 1.227 6 H -0.149 1.149 7 C -0.381 4.381 8 H 0.049 0.951 9 N -0.329 5.329 10 C 0.017 3.983 11 C -0.009 4.009 12 N -0.373 5.373 13 C 0.289 3.711 14 O -0.465 6.465 15 C -0.172 4.172 16 C 0.025 3.975 17 H 0.073 0.927 18 C -0.181 4.181 19 C -0.185 4.185 20 C -0.046 4.046 21 O -0.323 6.323 22 C 0.073 3.927 23 C -0.152 4.152 24 C -0.150 4.150 25 C -0.147 4.147 26 C -0.155 4.155 27 C -0.142 4.142 28 C -0.156 4.156 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.249 0.751 35 H 0.163 0.837 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.074 0.926 50 H 0.089 0.911 51 H 0.057 0.943 52 H 0.095 0.905 53 H 0.082 0.918 54 H 0.053 0.947 55 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 15.226 -0.011 14.057 20.722 hybrid contribution -0.873 0.947 -0.398 1.348 sum 14.353 0.937 13.658 19.835 Atomic orbital electron populations 1.70149 1.08237 1.27393 1.52553 1.26093 0.95237 1.01134 0.98392 0.86218 0.81546 0.80429 0.77155 1.22882 1.22675 1.14912 1.18342 0.92902 0.93456 1.33398 0.95123 1.44288 1.09911 1.58678 1.20006 1.21413 0.99562 0.93087 0.84239 1.21838 0.99307 0.96166 0.83623 1.45992 1.72624 1.13346 1.05350 1.21445 0.75262 0.87751 0.86627 1.90691 1.49633 1.17945 1.88277 1.22036 1.07102 0.98891 0.89128 1.22609 0.84148 0.95532 0.95236 0.92720 1.23024 0.98843 1.02714 0.93495 1.23125 0.96281 0.98282 1.00850 1.23779 1.01233 0.98488 0.81091 1.89027 1.29295 1.87491 1.26455 1.19585 0.89733 0.90308 0.93094 1.21585 0.97085 0.99128 0.97367 1.21318 0.95863 0.97523 1.00291 1.21869 0.99453 0.94697 0.98681 1.21315 0.99213 0.99257 0.95695 1.21230 0.98644 0.98565 0.95773 1.20826 0.98605 0.96627 0.99519 0.93066 0.93728 0.90844 0.92849 0.95973 0.75075 0.83658 0.86846 0.88921 0.88027 0.88086 0.90138 0.92086 0.88898 0.91408 0.93952 0.93948 0.91303 0.91783 0.90513 0.92587 0.91126 0.94335 0.90476 0.91829 0.94746 0.94794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.89 13.97 21.65 0.30 -58.59 16 2 C -0.01 -0.65 5.06 84.86 0.43 -0.22 16 3 Si 0.92 43.41 26.30 68.60 1.80 45.21 16 4 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.23 -9.27 5.68 99.48 0.57 -8.71 16 7 C -0.25 -13.95 8.82 84.04 0.74 -13.21 16 8 H 0.03 1.96 7.01 -2.91 -0.02 1.94 16 9 N -0.61 -27.28 1.87 -688.44 -1.29 -28.57 16 10 C 0.14 5.66 3.83 86.38 0.33 6.00 16 11 C 0.12 4.63 5.99 86.38 0.52 5.15 16 12 N -0.72 -22.50 5.56 -463.05 -2.57 -25.07 16 13 C 0.50 16.36 7.73 87.66 0.68 17.03 16 14 O -0.59 -25.46 15.51 7.77 0.12 -25.34 16 15 C -0.13 -2.73 5.19 29.85 0.15 -2.57 16 16 C 0.08 1.87 2.93 30.97 0.09 1.96 16 17 H 0.05 1.41 7.93 -2.38 -0.02 1.39 16 18 C -0.14 -1.84 6.64 31.58 0.21 -1.63 16 19 C -0.15 -1.93 7.15 31.89 0.23 -1.70 16 20 C 0.03 0.61 7.72 72.67 0.56 1.17 16 21 O -0.40 -12.09 10.58 -138.18 -1.46 -13.55 16 22 C 0.18 6.62 2.13 43.14 0.09 6.71 16 23 C -0.11 -3.97 4.65 30.22 0.14 -3.83 16 24 C -0.11 -2.90 5.32 30.16 0.16 -2.74 16 25 C -0.11 -2.52 5.85 31.31 0.18 -2.34 16 26 C -0.12 -3.05 5.32 30.14 0.16 -2.89 16 27 C -0.10 -2.88 5.61 30.20 0.17 -2.71 16 28 C -0.12 -4.34 4.45 28.74 0.13 -4.22 16 29 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.04 1.90 4.64 -2.39 -0.01 1.89 16 31 H 0.07 2.42 7.98 -2.39 -0.02 2.40 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.41 9.73 8.47 -92.71 -0.79 8.95 16 35 H 0.15 1.71 8.14 -2.39 -0.02 1.70 16 36 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.10 0.89 7.70 -2.39 -0.02 0.87 16 39 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 2.24 7.16 -2.39 -0.02 2.22 16 44 H 0.04 1.67 6.96 -2.39 -0.02 1.66 16 45 H 0.04 1.62 8.13 -2.39 -0.02 1.60 16 46 H 0.07 1.61 6.63 -2.39 -0.02 1.60 16 47 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 48 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 50 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.04 1.20 6.62 -2.39 -0.02 1.18 16 52 H 0.08 1.88 6.98 -2.39 -0.02 1.86 16 53 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 54 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 55 H 0.03 1.47 6.23 -2.39 -0.01 1.46 16 Total: -1.00 -79.01 410.96 1.81 -77.20 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -0.07 Total: 28.74 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 4.98 Total: -0.04 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -3.56 Total: -112.23 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -1.34 Total: -38.89 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.80 Total: 45.21 kcal Total: -79.01 1.81 -77.20 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483815598.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.290 kcal (2) G-P(sol) polarization free energy of solvation -79.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds