Wall clock time and date at job start Tue Mar 31 2020 22:17:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52996 * 109.47586 * 2 1
4 4 C 1.50697 * 109.47070 * 120.00300 * 2 1 3
5 5 O 1.21282 * 120.00426 * 9.17782 * 4 2 1
6 6 N 1.34780 * 120.00110 * 189.18320 * 4 2 1
7 7 C 1.48383 * 127.17040 * 355.21529 * 6 4 2
8 8 C 1.54943 * 103.37758 * 219.23714 * 7 6 4
9 9 C 1.54622 * 102.83356 * 322.72548 * 8 7 6
10 10 C 1.53005 * 110.32641 * 262.95343 * 9 8 7
11 11 C 1.53007 * 110.40986 * 140.78553 * 9 8 7
12 12 N 1.46504 * 109.47129 * 64.32803 * 11 9 8
13 13 C 1.36937 * 119.99667 * 179.97438 * 12 11 9
14 14 H 1.08002 * 120.00269 * 0.02562 * 13 12 11
15 15 C 1.38810 * 119.99506 * 179.97438 * 13 12 11
16 16 N 1.31612 * 120.00476 * 0.02562 * 15 13 12
17 17 Si 1.86802 * 119.99720 * 180.02562 * 15 13 12
18 18 H 1.48496 * 109.47230 * 359.97438 * 17 15 13
19 19 H 1.48494 * 109.47149 * 120.00069 * 17 15 13
20 20 H 1.48504 * 109.47332 * 240.00028 * 17 15 13
21 21 C 1.47489 * 127.03260 * 175.42071 * 6 4 2
22 22 C 1.53005 * 109.46942 * 239.99896 * 2 1 3
23 23 H 1.09003 * 109.48042 * 176.14338 * 22 2 1
24 24 C 1.53088 * 109.48210 * 56.11752 * 22 2 1
25 25 C 1.53170 * 109.16547 * 182.42138 * 24 22 2
26 26 C 1.53182 * 109.04840 * 56.95892 * 25 24 22
27 27 C 1.53086 * 109.16401 * 303.03236 * 26 25 24
28 28 O 1.42906 * 109.41775 * 57.60433 * 27 26 25
29 29 H 1.09004 * 109.47235 * 300.00135 * 1 2 3
30 30 H 1.09003 * 109.46959 * 59.99625 * 1 2 3
31 31 H 1.08995 * 109.47526 * 180.02562 * 1 2 3
32 32 H 1.08995 * 109.47342 * 187.76018 * 3 2 1
33 33 H 1.08997 * 109.46866 * 307.75976 * 3 2 1
34 34 H 1.08995 * 109.47151 * 67.75595 * 3 2 1
35 35 H 1.08997 * 110.51829 * 100.79439 * 7 6 4
36 36 H 1.09001 * 110.69447 * 337.75841 * 7 6 4
37 37 H 1.08994 * 110.74262 * 204.39294 * 8 7 6
38 38 H 1.08998 * 110.89788 * 81.12851 * 8 7 6
39 39 H 1.09003 * 109.46796 * 175.62335 * 10 9 8
40 40 H 1.08996 * 109.47049 * 295.62173 * 10 9 8
41 41 H 1.08993 * 109.46902 * 55.62754 * 10 9 8
42 42 H 1.09005 * 109.46502 * 184.32469 * 11 9 8
43 43 H 1.08993 * 109.47103 * 304.32306 * 11 9 8
44 44 H 0.96995 * 119.99648 * 359.97438 * 12 11 9
45 45 H 0.96997 * 120.00470 * 180.02562 * 16 15 13
46 46 H 1.08996 * 109.91780 * 35.15914 * 21 6 4
47 47 H 1.09002 * 109.91172 * 274.06743 * 21 6 4
48 48 H 1.09002 * 109.52031 * 302.31812 * 24 22 2
49 49 H 1.09000 * 109.52016 * 62.50137 * 24 22 2
50 50 H 1.09007 * 109.53359 * 297.09679 * 25 24 22
51 51 H 1.08995 * 109.54839 * 176.83781 * 25 24 22
52 52 H 1.09000 * 109.52357 * 183.11781 * 26 25 24
53 53 H 1.09006 * 109.51788 * 62.93628 * 26 25 24
54 54 H 1.09010 * 109.47832 * 297.62189 * 27 26 25
55 55 H 1.09000 * 109.48139 * 177.59229 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0323 -0.7105 1.2304
5 8 1.2569 -1.3143 1.9411
6 7 3.3433 -0.6748 1.5412
7 6 4.4383 -0.0734 0.7407
8 6 5.6037 -1.0796 0.9143
9 6 5.4527 -1.5294 2.3859
10 6 6.3956 -0.7282 3.2860
11 6 5.7379 -3.0268 2.5182
12 7 7.1366 -3.2901 2.1709
13 6 7.6245 -4.5687 2.2173
14 1 6.9781 -5.3832 2.5094
15 6 8.9497 -4.8182 1.8877
16 7 9.7372 -3.8259 1.5312
17 14 9.6151 -6.5626 1.9502
18 1 8.5363 -7.4889 2.3782
19 1 10.1003 -6.9558 0.6030
20 1 10.7380 -6.6296 2.9198
21 6 3.9857 -1.2303 2.7470
22 6 2.0399 -0.7213 -1.2493
23 1 3.1278 -0.6619 -1.2847
24 6 1.4515 -0.0585 -2.4975
25 6 1.9180 -0.8230 -3.7401
26 6 1.5008 -2.2911 -3.6097
27 6 2.0875 -2.8675 -2.3186
28 8 1.6387 -2.0922 -1.2052
29 1 -0.3634 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 3.1211 1.4455 -0.1388
33 1 1.5679 1.9947 -0.8124
34 1 1.7944 1.9147 0.9511
35 1 4.7111 0.9036 1.1397
36 1 4.1508 0.0049 -0.3078
37 1 6.5641 -0.5888 0.7574
38 1 5.4897 -1.9269 0.2382
39 1 6.2229 -1.0007 4.3271
40 1 7.4287 -0.9502 3.0189
41 1 6.2068 0.3370 3.1531
42 1 5.5528 -3.3425 3.5450
43 1 5.0855 -3.5818 1.8442
44 1 7.7170 -2.5587 1.9082
45 1 10.6631 -4.0002 1.3006
46 1 3.4822 -2.1495 3.0460
47 1 3.9439 -0.5034 3.5582
48 1 0.3631 -0.0813 -2.4432
49 1 1.7926 0.9751 -2.5561
50 1 3.0031 -0.7582 -3.8219
51 1 1.4577 -0.3906 -4.6284
52 1 1.8770 -2.8539 -4.4640
53 1 0.4133 -2.3592 -3.5779
54 1 3.1760 -2.8362 -2.3682
55 1 1.7585 -3.8998 -2.1989
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001484096147.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:17:05
Heat of formation + Delta-G solvation = -97.293486 kcal
Electronic energy + Delta-G solvation = -32322.687594 eV
Core-core repulsion = 28358.650946 eV
Total energy + Delta-G solvation = -3964.036648 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.29 seconds
Orbital eigenvalues (eV)
-41.95089 -40.36268 -39.23526 -36.59769 -36.27706 -34.55831 -34.25917 -32.11745
-30.87418 -30.61713 -28.47583 -27.73780 -27.35541 -25.95706 -25.38816 -24.54874
-24.03646 -22.48982 -20.85797 -20.29016 -19.73272 -19.12683 -18.13452 -17.29705
-17.07693 -16.89926 -16.65174 -16.30228 -15.80779 -15.67231 -15.50497 -15.20467
-15.03735 -14.94661 -14.82154 -14.34780 -14.03892 -13.92887 -13.71078 -13.66871
-13.43112 -13.31788 -13.14753 -13.06864 -13.00002 -12.86441 -12.81865 -12.59294
-12.53247 -12.15541 -12.14529 -12.07006 -12.01251 -11.81659 -11.63655 -11.55923
-11.45082 -11.35897 -11.11221 -10.96378 -10.77501 -10.25553 -9.70353 -8.99853
-7.96519 -5.23968 1.45637 1.46133 1.56127 1.62766 1.95430 2.54273
2.72219 3.27732 3.36465 3.50838 3.60662 3.66879 3.79462 3.92045
3.93661 3.98146 4.07261 4.12373 4.17728 4.21216 4.23748 4.30641
4.34226 4.39699 4.50426 4.62960 4.65116 4.69264 4.74288 4.76691
4.79477 4.85711 4.88585 4.90509 4.94623 4.98018 4.98370 5.03147
5.06977 5.08724 5.13095 5.19359 5.21062 5.24440 5.28392 5.35798
5.38908 5.45939 5.47842 5.53756 6.26441 6.27483 6.57636 7.16428
7.34170 8.07363 8.36177 9.26651
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.012711 B = 0.003295 C = 0.002899
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2202.272619 B = 8496.855851 C = 9656.011559
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.065 4.065
3 C -0.148 4.148
4 C 0.540 3.460
5 O -0.588 6.588
6 N -0.617 5.617
7 C 0.099 3.901
8 C -0.117 4.117
9 C -0.070 4.070
10 C -0.124 4.124
11 C 0.169 3.831
12 N -0.732 5.732
13 C -0.249 4.249
14 H 0.065 0.935
15 C -0.066 4.066
16 N -0.962 5.962
17 Si 0.968 3.032
18 H -0.273 1.273
19 H -0.290 1.290
20 H -0.290 1.290
21 C 0.121 3.879
22 C 0.093 3.907
23 H 0.066 0.934
24 C -0.146 4.146
25 C -0.122 4.122
26 C -0.150 4.150
27 C 0.053 3.947
28 O -0.401 6.401
29 H 0.053 0.947
30 H 0.093 0.907
31 H 0.040 0.960
32 H 0.082 0.918
33 H 0.099 0.901
34 H 0.065 0.935
35 H 0.107 0.893
36 H 0.101 0.899
37 H 0.091 0.909
38 H 0.049 0.951
39 H 0.053 0.947
40 H 0.047 0.953
41 H 0.083 0.917
42 H 0.012 0.988
43 H 0.000 1.000
44 H 0.381 0.619
45 H 0.253 0.747
46 H 0.047 0.953
47 H 0.085 0.915
48 H 0.079 0.921
49 H 0.103 0.897
50 H 0.066 0.934
51 H 0.087 0.913
52 H 0.084 0.916
53 H 0.069 0.931
54 H 0.044 0.956
55 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.863 16.505 -10.863 25.977
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C -0.068 4.068
3 C -0.205 4.205
4 C 0.330 3.670
5 O -0.468 6.468
6 N -0.350 5.350
7 C -0.022 4.022
8 C -0.155 4.155
9 C -0.071 4.071
10 C -0.181 4.181
11 C 0.042 3.958
12 N -0.376 5.376
13 C -0.381 4.381
14 H 0.083 0.917
15 C -0.258 4.258
16 N -0.613 5.613
17 Si 0.797 3.203
18 H -0.198 1.198
19 H -0.217 1.217
20 H -0.217 1.217
21 C -0.003 4.003
22 C 0.035 3.965
23 H 0.083 0.917
24 C -0.183 4.183
25 C -0.160 4.160
26 C -0.188 4.188
27 C -0.023 4.023
28 O -0.321 6.321
29 H 0.072 0.928
30 H 0.111 0.889
31 H 0.059 0.941
32 H 0.100 0.900
33 H 0.117 0.883
34 H 0.084 0.916
35 H 0.125 0.875
36 H 0.119 0.881
37 H 0.110 0.890
38 H 0.068 0.932
39 H 0.072 0.928
40 H 0.066 0.934
41 H 0.101 0.899
42 H 0.030 0.970
43 H 0.018 0.982
44 H 0.215 0.785
45 H 0.061 0.939
46 H 0.066 0.934
47 H 0.103 0.897
48 H 0.098 0.902
49 H 0.121 0.879
50 H 0.084 0.916
51 H 0.106 0.894
52 H 0.103 0.897
53 H 0.088 0.912
54 H 0.062 0.938
55 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -17.510 15.928 -10.320 25.823
hybrid contribution 0.987 -1.600 0.175 1.888
sum -16.523 14.329 -10.145 24.109
Atomic orbital electron populations
1.21646 0.91504 1.01944 1.02711 1.20845 0.98533 0.97058 0.90342
1.22155 1.03130 0.90817 1.04392 1.20776 0.79977 0.79541 0.86707
1.90643 1.56106 1.45486 1.54525 1.48888 1.06204 1.56958 1.22907
1.23131 0.84771 0.97105 0.97158 1.22708 0.99427 0.98722 0.94646
1.21495 0.94009 0.94618 0.96975 1.21733 0.98244 0.99740 0.98416
1.20735 0.85553 0.93539 0.95960 1.42430 1.07332 1.06103 1.81741
1.19588 0.94279 0.86863 1.37340 0.91715 1.25423 0.96707 1.00974
1.02742 1.69780 1.06198 1.31457 1.53818 0.85161 0.77981 0.80202
0.76936 1.19823 1.21737 1.21733 1.21987 0.91344 0.98684 0.88276
1.22359 0.98102 0.81819 0.94182 0.91674 1.22316 1.02227 1.00903
0.92864 1.21626 1.01565 0.94367 0.98414 1.22148 1.01678 0.97626
0.97351 1.22674 0.98021 0.95242 0.86360 1.87997 1.77320 1.21369
1.45420 0.92808 0.88856 0.94088 0.89956 0.88252 0.91585 0.87509
0.88082 0.89003 0.93179 0.92808 0.93399 0.89858 0.97028 0.98237
0.78537 0.93853 0.93423 0.89695 0.90239 0.87880 0.91574 0.89446
0.89745 0.91190 0.93797 0.89511
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.50 7.25 71.98 0.52 -1.98 16
2 C -0.06 -1.33 0.36 -52.93 -0.02 -1.35 16
3 C -0.15 -1.84 7.56 71.98 0.54 -1.30 16
4 C 0.54 16.29 6.15 87.66 0.54 16.83 16
5 O -0.59 -23.30 16.29 -3.04 -0.05 -23.35 16
6 N -0.62 -16.90 3.26 -808.70 -2.64 -19.54 16
7 C 0.10 2.05 4.99 86.68 0.43 2.48 16
8 C -0.12 -3.31 5.74 31.81 0.18 -3.13 16
9 C -0.07 -2.22 0.67 -51.29 -0.03 -2.26 16
10 C -0.12 -3.58 8.04 71.98 0.58 -3.00 16
11 C 0.17 7.23 4.85 86.38 0.42 7.64 16
12 N -0.73 -37.29 5.12 -343.43 -1.76 -39.05 16
13 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16
14 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16
15 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16
16 N -0.96 -57.71 13.06 21.65 0.28 -57.43 16
17 Si 0.97 46.57 29.55 68.60 2.03 48.60 16
18 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16
19 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16
20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16
21 C 0.12 3.65 6.30 86.53 0.54 4.19 16
22 C 0.09 1.84 1.75 30.63 0.05 1.89 16
23 H 0.07 1.29 5.26 -2.39 -0.01 1.27 16
24 C -0.15 -1.85 4.71 30.68 0.14 -1.71 16
25 C -0.12 -1.51 6.03 30.71 0.19 -1.33 16
26 C -0.15 -2.34 6.14 30.68 0.19 -2.15 16
27 C 0.05 1.19 6.84 72.01 0.49 1.69 16
28 O -0.40 -10.93 9.41 -148.98 -1.40 -12.33 16
29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16
30 H 0.09 1.30 6.31 -2.39 -0.02 1.28 16
31 H 0.04 1.10 7.65 -2.39 -0.02 1.09 16
32 H 0.08 0.85 4.86 -2.39 -0.01 0.84 16
33 H 0.10 0.70 6.99 -2.39 -0.02 0.69 16
34 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16
35 H 0.11 1.57 7.97 -2.39 -0.02 1.56 16
36 H 0.10 1.71 3.81 -2.39 -0.01 1.71 16
37 H 0.09 2.47 7.85 -2.39 -0.02 2.45 16
38 H 0.05 1.71 7.85 -2.39 -0.02 1.69 16
39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16
40 H 0.05 1.64 6.75 -2.39 -0.02 1.63 16
41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16
42 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16
43 H 0.00 -0.01 8.11 -2.39 -0.02 -0.03 16
44 H 0.38 19.80 6.18 -92.71 -0.57 19.23 16
45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16
46 H 0.05 1.72 7.55 -2.39 -0.02 1.70 16
47 H 0.08 2.24 7.68 -2.39 -0.02 2.22 16
48 H 0.08 1.02 6.23 -2.39 -0.01 1.01 16
49 H 0.10 0.78 6.84 -2.39 -0.02 0.77 16
50 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16
51 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16
52 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16
53 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16
54 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16
55 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16
Total: -1.00 -75.27 404.45 2.84 -72.43
By element:
Atomic # 1 Polarization: 30.53 SS G_CDS: 0.30 Total: 30.83 kcal
Atomic # 6 Polarization: -6.24 SS G_CDS: 6.08 Total: -0.16 kcal
Atomic # 7 Polarization: -111.90 SS G_CDS: -4.11 Total: -116.01 kcal
Atomic # 8 Polarization: -34.23 SS G_CDS: -1.45 Total: -35.68 kcal
Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal
Total: -75.27 2.84 -72.43 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484096147.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.863 kcal
(2) G-P(sol) polarization free energy of solvation -75.270 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.132 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.431 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.293 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.29 seconds