Wall clock time and date at job start Tue Mar 31 2020 22:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47586 * 2 1 4 4 C 1.50697 * 109.47070 * 120.00300 * 2 1 3 5 5 O 1.21282 * 120.00426 * 9.17782 * 4 2 1 6 6 N 1.34780 * 120.00110 * 189.18320 * 4 2 1 7 7 C 1.48383 * 127.17040 * 355.21529 * 6 4 2 8 8 C 1.54943 * 103.37758 * 219.23714 * 7 6 4 9 9 C 1.54622 * 102.83356 * 322.72548 * 8 7 6 10 10 C 1.53005 * 110.32641 * 262.95343 * 9 8 7 11 11 C 1.53007 * 110.40986 * 140.78553 * 9 8 7 12 12 N 1.46504 * 109.47129 * 64.32803 * 11 9 8 13 13 C 1.36937 * 119.99667 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00269 * 0.02562 * 13 12 11 15 15 C 1.38810 * 119.99506 * 179.97438 * 13 12 11 16 16 N 1.31612 * 120.00476 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99720 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47149 * 120.00069 * 17 15 13 20 20 H 1.48504 * 109.47332 * 240.00028 * 17 15 13 21 21 C 1.47489 * 127.03260 * 175.42071 * 6 4 2 22 22 C 1.53005 * 109.46942 * 239.99896 * 2 1 3 23 23 H 1.09003 * 109.48042 * 176.14338 * 22 2 1 24 24 C 1.53088 * 109.48210 * 56.11752 * 22 2 1 25 25 C 1.53170 * 109.16547 * 182.42138 * 24 22 2 26 26 C 1.53182 * 109.04840 * 56.95892 * 25 24 22 27 27 C 1.53086 * 109.16401 * 303.03236 * 26 25 24 28 28 O 1.42906 * 109.41775 * 57.60433 * 27 26 25 29 29 H 1.09004 * 109.47235 * 300.00135 * 1 2 3 30 30 H 1.09003 * 109.46959 * 59.99625 * 1 2 3 31 31 H 1.08995 * 109.47526 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47342 * 187.76018 * 3 2 1 33 33 H 1.08997 * 109.46866 * 307.75976 * 3 2 1 34 34 H 1.08995 * 109.47151 * 67.75595 * 3 2 1 35 35 H 1.08997 * 110.51829 * 100.79439 * 7 6 4 36 36 H 1.09001 * 110.69447 * 337.75841 * 7 6 4 37 37 H 1.08994 * 110.74262 * 204.39294 * 8 7 6 38 38 H 1.08998 * 110.89788 * 81.12851 * 8 7 6 39 39 H 1.09003 * 109.46796 * 175.62335 * 10 9 8 40 40 H 1.08996 * 109.47049 * 295.62173 * 10 9 8 41 41 H 1.08993 * 109.46902 * 55.62754 * 10 9 8 42 42 H 1.09005 * 109.46502 * 184.32469 * 11 9 8 43 43 H 1.08993 * 109.47103 * 304.32306 * 11 9 8 44 44 H 0.96995 * 119.99648 * 359.97438 * 12 11 9 45 45 H 0.96997 * 120.00470 * 180.02562 * 16 15 13 46 46 H 1.08996 * 109.91780 * 35.15914 * 21 6 4 47 47 H 1.09002 * 109.91172 * 274.06743 * 21 6 4 48 48 H 1.09002 * 109.52031 * 302.31812 * 24 22 2 49 49 H 1.09000 * 109.52016 * 62.50137 * 24 22 2 50 50 H 1.09007 * 109.53359 * 297.09679 * 25 24 22 51 51 H 1.08995 * 109.54839 * 176.83781 * 25 24 22 52 52 H 1.09000 * 109.52357 * 183.11781 * 26 25 24 53 53 H 1.09006 * 109.51788 * 62.93628 * 26 25 24 54 54 H 1.09010 * 109.47832 * 297.62189 * 27 26 25 55 55 H 1.09000 * 109.48139 * 177.59229 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.2569 -1.3143 1.9411 6 7 3.3433 -0.6748 1.5412 7 6 4.4383 -0.0734 0.7407 8 6 5.6037 -1.0796 0.9143 9 6 5.4527 -1.5294 2.3859 10 6 6.3956 -0.7282 3.2860 11 6 5.7379 -3.0268 2.5182 12 7 7.1366 -3.2901 2.1709 13 6 7.6245 -4.5687 2.2173 14 1 6.9781 -5.3832 2.5094 15 6 8.9497 -4.8182 1.8877 16 7 9.7372 -3.8259 1.5312 17 14 9.6151 -6.5626 1.9502 18 1 8.5363 -7.4889 2.3782 19 1 10.1003 -6.9558 0.6030 20 1 10.7380 -6.6296 2.9198 21 6 3.9857 -1.2303 2.7470 22 6 2.0399 -0.7213 -1.2493 23 1 3.1278 -0.6619 -1.2847 24 6 1.4515 -0.0585 -2.4975 25 6 1.9180 -0.8230 -3.7401 26 6 1.5008 -2.2911 -3.6097 27 6 2.0875 -2.8675 -2.3186 28 8 1.6387 -2.0922 -1.2052 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1211 1.4455 -0.1388 33 1 1.5679 1.9947 -0.8124 34 1 1.7944 1.9147 0.9511 35 1 4.7111 0.9036 1.1397 36 1 4.1508 0.0049 -0.3078 37 1 6.5641 -0.5888 0.7574 38 1 5.4897 -1.9269 0.2382 39 1 6.2229 -1.0007 4.3271 40 1 7.4287 -0.9502 3.0189 41 1 6.2068 0.3370 3.1531 42 1 5.5528 -3.3425 3.5450 43 1 5.0855 -3.5818 1.8442 44 1 7.7170 -2.5587 1.9082 45 1 10.6631 -4.0002 1.3006 46 1 3.4822 -2.1495 3.0460 47 1 3.9439 -0.5034 3.5582 48 1 0.3631 -0.0813 -2.4432 49 1 1.7926 0.9751 -2.5561 50 1 3.0031 -0.7582 -3.8219 51 1 1.4577 -0.3906 -4.6284 52 1 1.8770 -2.8539 -4.4640 53 1 0.4133 -2.3592 -3.5779 54 1 3.1760 -2.8362 -2.3682 55 1 1.7585 -3.8998 -2.1989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484096147.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:05 Heat of formation + Delta-G solvation = -97.293486 kcal Electronic energy + Delta-G solvation = -32322.687594 eV Core-core repulsion = 28358.650946 eV Total energy + Delta-G solvation = -3964.036648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.95089 -40.36268 -39.23526 -36.59769 -36.27706 -34.55831 -34.25917 -32.11745 -30.87418 -30.61713 -28.47583 -27.73780 -27.35541 -25.95706 -25.38816 -24.54874 -24.03646 -22.48982 -20.85797 -20.29016 -19.73272 -19.12683 -18.13452 -17.29705 -17.07693 -16.89926 -16.65174 -16.30228 -15.80779 -15.67231 -15.50497 -15.20467 -15.03735 -14.94661 -14.82154 -14.34780 -14.03892 -13.92887 -13.71078 -13.66871 -13.43112 -13.31788 -13.14753 -13.06864 -13.00002 -12.86441 -12.81865 -12.59294 -12.53247 -12.15541 -12.14529 -12.07006 -12.01251 -11.81659 -11.63655 -11.55923 -11.45082 -11.35897 -11.11221 -10.96378 -10.77501 -10.25553 -9.70353 -8.99853 -7.96519 -5.23968 1.45637 1.46133 1.56127 1.62766 1.95430 2.54273 2.72219 3.27732 3.36465 3.50838 3.60662 3.66879 3.79462 3.92045 3.93661 3.98146 4.07261 4.12373 4.17728 4.21216 4.23748 4.30641 4.34226 4.39699 4.50426 4.62960 4.65116 4.69264 4.74288 4.76691 4.79477 4.85711 4.88585 4.90509 4.94623 4.98018 4.98370 5.03147 5.06977 5.08724 5.13095 5.19359 5.21062 5.24440 5.28392 5.35798 5.38908 5.45939 5.47842 5.53756 6.26441 6.27483 6.57636 7.16428 7.34170 8.07363 8.36177 9.26651 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.003295 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.272619 B = 8496.855851 C = 9656.011559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.148 4.148 4 C 0.540 3.460 5 O -0.588 6.588 6 N -0.617 5.617 7 C 0.099 3.901 8 C -0.117 4.117 9 C -0.070 4.070 10 C -0.124 4.124 11 C 0.169 3.831 12 N -0.732 5.732 13 C -0.249 4.249 14 H 0.065 0.935 15 C -0.066 4.066 16 N -0.962 5.962 17 Si 0.968 3.032 18 H -0.273 1.273 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.121 3.879 22 C 0.093 3.907 23 H 0.066 0.934 24 C -0.146 4.146 25 C -0.122 4.122 26 C -0.150 4.150 27 C 0.053 3.947 28 O -0.401 6.401 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.012 0.988 43 H 0.000 1.000 44 H 0.381 0.619 45 H 0.253 0.747 46 H 0.047 0.953 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.066 0.934 51 H 0.087 0.913 52 H 0.084 0.916 53 H 0.069 0.931 54 H 0.044 0.956 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.863 16.505 -10.863 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.068 4.068 3 C -0.205 4.205 4 C 0.330 3.670 5 O -0.468 6.468 6 N -0.350 5.350 7 C -0.022 4.022 8 C -0.155 4.155 9 C -0.071 4.071 10 C -0.181 4.181 11 C 0.042 3.958 12 N -0.376 5.376 13 C -0.381 4.381 14 H 0.083 0.917 15 C -0.258 4.258 16 N -0.613 5.613 17 Si 0.797 3.203 18 H -0.198 1.198 19 H -0.217 1.217 20 H -0.217 1.217 21 C -0.003 4.003 22 C 0.035 3.965 23 H 0.083 0.917 24 C -0.183 4.183 25 C -0.160 4.160 26 C -0.188 4.188 27 C -0.023 4.023 28 O -0.321 6.321 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.030 0.970 43 H 0.018 0.982 44 H 0.215 0.785 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.103 0.897 48 H 0.098 0.902 49 H 0.121 0.879 50 H 0.084 0.916 51 H 0.106 0.894 52 H 0.103 0.897 53 H 0.088 0.912 54 H 0.062 0.938 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.510 15.928 -10.320 25.823 hybrid contribution 0.987 -1.600 0.175 1.888 sum -16.523 14.329 -10.145 24.109 Atomic orbital electron populations 1.21646 0.91504 1.01944 1.02711 1.20845 0.98533 0.97058 0.90342 1.22155 1.03130 0.90817 1.04392 1.20776 0.79977 0.79541 0.86707 1.90643 1.56106 1.45486 1.54525 1.48888 1.06204 1.56958 1.22907 1.23131 0.84771 0.97105 0.97158 1.22708 0.99427 0.98722 0.94646 1.21495 0.94009 0.94618 0.96975 1.21733 0.98244 0.99740 0.98416 1.20735 0.85553 0.93539 0.95960 1.42430 1.07332 1.06103 1.81741 1.19588 0.94279 0.86863 1.37340 0.91715 1.25423 0.96707 1.00974 1.02742 1.69780 1.06198 1.31457 1.53818 0.85161 0.77981 0.80202 0.76936 1.19823 1.21737 1.21733 1.21987 0.91344 0.98684 0.88276 1.22359 0.98102 0.81819 0.94182 0.91674 1.22316 1.02227 1.00903 0.92864 1.21626 1.01565 0.94367 0.98414 1.22148 1.01678 0.97626 0.97351 1.22674 0.98021 0.95242 0.86360 1.87997 1.77320 1.21369 1.45420 0.92808 0.88856 0.94088 0.89956 0.88252 0.91585 0.87509 0.88082 0.89003 0.93179 0.92808 0.93399 0.89858 0.97028 0.98237 0.78537 0.93853 0.93423 0.89695 0.90239 0.87880 0.91574 0.89446 0.89745 0.91190 0.93797 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 7.25 71.98 0.52 -1.98 16 2 C -0.06 -1.33 0.36 -52.93 -0.02 -1.35 16 3 C -0.15 -1.84 7.56 71.98 0.54 -1.30 16 4 C 0.54 16.29 6.15 87.66 0.54 16.83 16 5 O -0.59 -23.30 16.29 -3.04 -0.05 -23.35 16 6 N -0.62 -16.90 3.26 -808.70 -2.64 -19.54 16 7 C 0.10 2.05 4.99 86.68 0.43 2.48 16 8 C -0.12 -3.31 5.74 31.81 0.18 -3.13 16 9 C -0.07 -2.22 0.67 -51.29 -0.03 -2.26 16 10 C -0.12 -3.58 8.04 71.98 0.58 -3.00 16 11 C 0.17 7.23 4.85 86.38 0.42 7.64 16 12 N -0.73 -37.29 5.12 -343.43 -1.76 -39.05 16 13 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 14 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 15 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 16 N -0.96 -57.71 13.06 21.65 0.28 -57.43 16 17 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 18 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 C 0.12 3.65 6.30 86.53 0.54 4.19 16 22 C 0.09 1.84 1.75 30.63 0.05 1.89 16 23 H 0.07 1.29 5.26 -2.39 -0.01 1.27 16 24 C -0.15 -1.85 4.71 30.68 0.14 -1.71 16 25 C -0.12 -1.51 6.03 30.71 0.19 -1.33 16 26 C -0.15 -2.34 6.14 30.68 0.19 -2.15 16 27 C 0.05 1.19 6.84 72.01 0.49 1.69 16 28 O -0.40 -10.93 9.41 -148.98 -1.40 -12.33 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.30 6.31 -2.39 -0.02 1.28 16 31 H 0.04 1.10 7.65 -2.39 -0.02 1.09 16 32 H 0.08 0.85 4.86 -2.39 -0.01 0.84 16 33 H 0.10 0.70 6.99 -2.39 -0.02 0.69 16 34 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 35 H 0.11 1.57 7.97 -2.39 -0.02 1.56 16 36 H 0.10 1.71 3.81 -2.39 -0.01 1.71 16 37 H 0.09 2.47 7.85 -2.39 -0.02 2.45 16 38 H 0.05 1.71 7.85 -2.39 -0.02 1.69 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.64 6.75 -2.39 -0.02 1.63 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 43 H 0.00 -0.01 8.11 -2.39 -0.02 -0.03 16 44 H 0.38 19.80 6.18 -92.71 -0.57 19.23 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.05 1.72 7.55 -2.39 -0.02 1.70 16 47 H 0.08 2.24 7.68 -2.39 -0.02 2.22 16 48 H 0.08 1.02 6.23 -2.39 -0.01 1.01 16 49 H 0.10 0.78 6.84 -2.39 -0.02 0.77 16 50 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 51 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 53 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 54 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 55 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -75.27 404.45 2.84 -72.43 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.30 Total: 30.83 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 6.08 Total: -0.16 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -4.11 Total: -116.01 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.45 Total: -35.68 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -75.27 2.84 -72.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484096147.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.863 kcal (2) G-P(sol) polarization free energy of solvation -75.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds