Wall clock time and date at job start Tue Mar 31 2020 21:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46971 * 2 1 4 4 C 1.52995 * 109.47226 * 239.99869 * 2 1 3 5 5 C 1.53000 * 109.47252 * 299.99958 * 4 2 1 6 6 C 1.52996 * 109.47326 * 300.00025 * 5 4 2 7 7 C 1.53008 * 109.47108 * 59.99914 * 6 5 4 8 8 C 1.53000 * 109.47097 * 300.00226 * 7 6 5 9 9 H 1.09008 * 109.47139 * 300.00035 * 8 7 6 10 10 C 1.50691 * 109.47232 * 179.97438 * 8 7 6 11 11 O 1.21284 * 120.00197 * 244.35391 * 10 8 7 12 12 N 1.34779 * 120.00123 * 64.35554 * 10 8 7 13 13 C 1.46501 * 119.99999 * 185.19339 * 12 10 8 14 14 C 1.53002 * 109.54061 * 298.59174 * 13 12 10 15 15 N 1.46503 * 109.47232 * 305.35064 * 14 13 12 16 16 C 1.36933 * 119.99592 * 185.19876 * 15 14 13 17 17 H 1.08005 * 120.00393 * 354.19152 * 16 15 14 18 18 C 1.38818 * 119.99872 * 173.92400 * 16 15 14 19 19 N 1.31613 * 120.00081 * 183.60306 * 18 16 15 20 20 Si 1.86804 * 119.99712 * 3.60213 * 18 16 15 21 21 H 1.48493 * 109.47270 * 92.86388 * 20 18 16 22 22 H 1.48500 * 109.46714 * 212.86392 * 20 18 16 23 23 H 1.48495 * 109.46999 * 332.86087 * 20 18 16 24 24 C 1.53179 * 109.61966 * 58.81883 * 13 12 10 25 25 C 1.53089 * 109.16203 * 62.92948 * 24 13 12 26 26 O 1.42910 * 109.41595 * 57.60930 * 25 24 13 27 27 C 1.42902 * 114.09519 * 298.84125 * 26 25 24 28 28 C 1.53094 * 109.41625 * 61.15892 * 27 26 25 29 29 H 1.08992 * 109.47358 * 300.00009 * 1 2 3 30 30 H 1.09002 * 109.46940 * 60.00525 * 1 2 3 31 31 H 1.09004 * 109.46807 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47052 * 183.07562 * 3 2 1 33 33 H 1.08996 * 109.46981 * 303.07502 * 3 2 1 34 34 H 1.09001 * 109.47100 * 63.07535 * 3 2 1 35 35 H 1.09002 * 109.47483 * 59.99938 * 4 2 1 36 36 H 1.08999 * 109.47109 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47196 * 60.00118 * 5 4 2 38 38 H 1.09002 * 109.47575 * 179.97438 * 5 4 2 39 39 H 1.09006 * 109.47318 * 179.97438 * 6 5 4 40 40 H 1.08999 * 109.47058 * 300.00177 * 6 5 4 41 41 H 1.08994 * 109.47398 * 180.02562 * 7 6 5 42 42 H 1.08999 * 109.46946 * 60.00194 * 7 6 5 43 43 H 0.96999 * 120.00091 * 5.18246 * 12 10 8 44 44 H 1.09002 * 109.46966 * 185.34877 * 14 13 12 45 45 H 1.08998 * 109.46741 * 65.35011 * 14 13 12 46 46 H 0.97000 * 119.99942 * 5.19867 * 15 14 13 47 47 H 0.96999 * 120.00297 * 179.97438 * 19 18 16 48 48 H 1.08998 * 109.51625 * 182.83567 * 24 13 12 49 49 H 1.08996 * 109.52088 * 303.02292 * 24 13 12 50 50 H 1.08997 * 109.48270 * 297.62699 * 25 24 13 51 51 H 1.09004 * 109.47798 * 177.59010 * 25 24 13 52 52 H 1.09003 * 109.48012 * 301.17037 * 27 26 25 53 53 H 1.08999 * 109.48631 * 181.14494 * 27 26 25 54 54 H 1.09001 * 109.51737 * 182.48690 * 28 27 26 55 55 H 1.08998 * 109.52451 * 62.29703 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5301 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1637 1.2493 8 6 2.0399 -0.7212 1.2493 9 1 3.1300 -0.7212 1.2493 10 6 1.5371 -0.0107 2.4794 11 8 0.7761 0.9274 2.3694 12 7 1.9329 -0.4175 3.7018 13 6 1.3576 0.1977 4.9005 14 6 1.6839 1.6924 4.9155 15 7 3.1322 1.8773 4.7950 16 6 3.6726 3.1318 4.8923 17 1 3.0264 3.9942 4.9637 18 6 5.0512 3.2945 4.9047 19 7 5.5709 4.4924 5.0695 20 14 6.1685 1.8133 4.6876 21 1 6.5101 1.6573 3.2510 22 1 7.4126 2.0125 5.4735 23 1 5.4709 0.5928 5.1660 24 6 -0.1620 0.0048 4.8987 25 6 -0.4787 -1.4915 4.9632 26 8 0.1216 -2.0542 6.1316 27 6 1.5460 -1.9455 6.1657 28 6 1.9441 -0.4673 6.1495 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1286 1.4430 -0.0551 33 1 1.6323 1.9720 -0.8611 34 1 1.7223 1.9402 0.9163 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2489 37 1 0.4401 -2.1638 -1.2492 38 1 1.8930 -2.6775 -2.1394 39 1 1.6763 -3.9126 0.0003 40 1 3.1300 -2.8850 0.0001 41 1 1.8936 -2.6773 2.1393 42 1 0.4400 -2.1638 1.2493 43 1 2.5987 -1.1177 3.7880 44 1 1.3383 2.1303 5.8520 45 1 1.1843 2.1817 4.0794 46 1 3.7082 1.1112 4.6462 47 1 6.5341 4.6061 5.0786 48 1 -0.5938 0.5063 5.7648 49 1 -0.5816 0.4269 3.9855 50 1 -0.0815 -1.9858 4.0766 51 1 -1.5587 -1.6330 5.0053 52 1 1.9697 -2.4457 5.2948 53 1 1.9248 -2.4140 7.0741 54 1 3.0307 -0.3830 6.1309 55 1 1.5549 0.0246 7.0409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484872390.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:21 Heat of formation + Delta-G solvation = -105.960416 kcal Electronic energy + Delta-G solvation = -33494.869921 eV Core-core repulsion = 29530.457447 eV Total energy + Delta-G solvation = -3964.412474 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.18038 -40.65621 -38.72571 -37.24162 -35.56927 -34.10789 -33.45364 -32.77778 -32.09577 -31.39811 -28.49706 -28.20247 -27.47832 -25.19209 -24.72673 -24.32892 -23.01099 -22.22387 -21.67984 -20.43407 -19.78406 -19.36010 -18.10812 -17.21061 -16.98151 -16.77272 -16.51310 -16.22992 -16.06637 -15.74163 -15.45819 -15.31643 -15.18818 -15.03914 -14.88722 -14.47818 -14.19737 -13.94893 -13.81068 -13.73507 -13.63558 -13.24613 -13.14015 -12.92841 -12.86034 -12.79106 -12.60308 -12.34461 -12.28531 -12.19342 -12.13701 -11.99400 -11.88359 -11.76616 -11.71083 -11.44102 -11.27503 -11.02837 -10.99102 -10.91031 -10.57455 -10.04187 -9.84660 -9.24574 -8.04536 -5.37229 1.28423 1.36584 1.43925 1.80971 2.23327 2.45022 2.97145 3.24770 3.48278 3.57771 3.66784 3.74352 3.80627 3.85975 3.96438 4.10148 4.16475 4.19636 4.27230 4.34671 4.42227 4.44221 4.46962 4.52434 4.57583 4.65551 4.74247 4.75312 4.79404 4.83058 4.85203 4.86529 4.91376 4.99410 5.06148 5.11033 5.12667 5.13521 5.16084 5.19845 5.22229 5.25135 5.27010 5.34451 5.46183 5.47640 5.57376 5.67375 5.73655 5.81868 6.18300 6.26210 6.68475 7.06197 7.46164 7.80651 8.05124 9.17669 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009020 B = 0.005472 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.607260 B = 5115.605852 C = 6811.363131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.151 4.151 4 C -0.107 4.107 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.104 4.104 8 C -0.096 4.096 9 H 0.090 0.910 10 C 0.520 3.480 11 O -0.545 6.545 12 N -0.715 5.715 13 C 0.181 3.819 14 C 0.150 3.850 15 N -0.741 5.741 16 C -0.232 4.232 17 H 0.042 0.958 18 C -0.065 4.065 19 N -0.986 5.986 20 Si 0.958 3.042 21 H -0.282 1.282 22 H -0.294 1.294 23 H -0.241 1.241 24 C -0.155 4.155 25 C 0.073 3.927 26 O -0.393 6.393 27 C 0.066 3.934 28 C -0.153 4.153 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.405 0.595 44 H 0.019 0.981 45 H 0.025 0.975 46 H 0.366 0.634 47 H 0.257 0.743 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.059 0.941 51 H 0.105 0.895 52 H 0.067 0.933 53 H 0.112 0.888 54 H 0.075 0.925 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.141 -23.516 -8.994 27.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.036 4.036 3 C -0.208 4.208 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.142 4.142 8 C -0.117 4.117 9 H 0.108 0.892 10 C 0.308 3.692 11 O -0.423 6.423 12 N -0.368 5.368 13 C 0.095 3.905 14 C 0.022 3.978 15 N -0.387 5.387 16 C -0.363 4.363 17 H 0.060 0.940 18 C -0.256 4.256 19 N -0.637 5.637 20 Si 0.784 3.216 21 H -0.208 1.208 22 H -0.221 1.221 23 H -0.165 1.165 24 C -0.194 4.194 25 C -0.003 4.003 26 O -0.312 6.312 27 C -0.010 4.010 28 C -0.191 4.191 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.241 0.759 44 H 0.037 0.963 45 H 0.043 0.957 46 H 0.200 0.800 47 H 0.066 0.934 48 H 0.092 0.908 49 H 0.099 0.901 50 H 0.077 0.923 51 H 0.123 0.877 52 H 0.085 0.915 53 H 0.130 0.870 54 H 0.094 0.906 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.834 -22.724 -8.872 26.692 hybrid contribution 1.583 0.660 -0.122 1.719 sum -9.251 -22.064 -8.994 25.560 Atomic orbital electron populations 1.22138 0.94101 1.01976 1.02314 1.20195 0.96349 0.93473 0.93586 1.22026 0.99561 0.97258 1.01995 1.21602 1.00367 0.96256 0.96190 1.21582 1.01206 0.94417 0.98397 1.21517 1.01055 0.99256 0.93260 1.21551 1.01480 0.91302 0.99823 1.21419 1.01549 0.97070 0.91680 0.89153 1.20941 0.80350 0.83057 0.84848 1.90544 1.37031 1.28426 1.86284 1.46026 1.44606 1.41195 1.04933 1.20384 0.93734 0.91296 0.85115 1.21093 0.84024 0.94828 0.97821 1.42381 1.03186 1.04394 1.88735 1.18949 0.90853 0.85482 1.40988 0.93961 1.25550 0.98014 0.99588 1.02460 1.69910 1.11300 1.23573 1.58878 0.85371 0.78245 0.80274 0.77695 1.20795 1.22123 1.16483 1.22433 0.94222 0.99049 1.03737 1.22526 0.99005 0.90810 0.87998 1.87911 1.20497 1.79753 1.43031 1.22674 0.81051 0.93614 1.03707 1.22426 1.01823 0.98010 0.96884 0.91798 0.93543 0.91431 0.94286 0.92844 0.93184 0.91754 0.92237 0.91438 0.90917 0.90071 0.91616 0.90307 0.91116 0.75874 0.96346 0.95658 0.79956 0.93390 0.90832 0.90121 0.92265 0.87704 0.91505 0.86983 0.90623 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 7.48 71.98 0.54 -2.87 16 2 C -0.04 -0.82 0.51 -52.18 -0.03 -0.85 16 3 C -0.15 -4.58 8.21 71.98 0.59 -3.98 16 4 C -0.11 -1.92 4.73 30.59 0.14 -1.77 16 5 C -0.12 -1.58 5.65 30.59 0.17 -1.41 16 6 C -0.11 -1.36 5.92 30.60 0.18 -1.18 16 7 C -0.10 -1.53 4.88 30.60 0.15 -1.38 16 8 C -0.10 -2.09 1.84 -11.54 -0.02 -2.11 16 9 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 10 C 0.52 14.53 5.89 87.65 0.52 15.05 16 11 O -0.54 -19.06 7.70 -3.04 -0.02 -19.08 16 12 N -0.71 -18.16 3.52 -422.38 -1.49 -19.65 16 13 C 0.18 5.26 0.32 3.72 0.00 5.26 16 14 C 0.15 6.16 4.89 86.38 0.42 6.58 16 15 N -0.74 -35.18 4.96 -343.44 -1.70 -36.88 16 16 C -0.23 -13.77 10.47 84.04 0.88 -12.89 16 17 H 0.04 2.84 8.06 -2.91 -0.02 2.81 16 18 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 19 N -0.99 -64.80 13.97 21.65 0.30 -64.49 16 20 Si 0.96 45.11 27.85 68.60 1.91 47.02 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 23 H -0.24 -9.66 6.37 99.48 0.63 -9.03 16 24 C -0.16 -4.04 4.75 30.68 0.15 -3.89 16 25 C 0.07 1.48 6.68 72.01 0.48 1.97 16 26 O -0.39 -8.61 10.77 -148.98 -1.60 -10.21 16 27 C 0.07 1.25 6.67 72.01 0.48 1.73 16 28 C -0.15 -3.89 4.80 30.69 0.15 -3.75 16 29 H 0.06 1.84 5.35 -2.39 -0.01 1.83 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.27 4.81 -2.39 -0.01 1.25 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.90 5.61 -2.39 -0.01 1.88 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 0.90 6.43 -2.39 -0.02 0.88 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 0.94 8.05 -2.39 -0.02 0.92 16 42 H 0.07 1.08 6.43 -2.39 -0.02 1.07 16 43 H 0.41 8.16 7.49 -92.71 -0.69 7.47 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 45 H 0.03 1.19 6.28 -2.39 -0.01 1.18 16 46 H 0.37 15.98 4.46 -92.71 -0.41 15.56 16 47 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 48 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.08 2.37 6.21 -2.39 -0.01 2.35 16 50 H 0.06 1.08 7.75 -2.39 -0.02 1.06 16 51 H 0.10 1.82 8.14 -2.38 -0.02 1.81 16 52 H 0.07 1.00 7.13 -2.39 -0.02 0.99 16 53 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 54 H 0.08 2.06 7.43 -2.39 -0.02 2.05 16 55 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -74.20 392.31 2.37 -71.83 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: -0.30 Total: 40.43 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.27 Total: -8.96 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -2.89 Total: -121.02 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.63 Total: -29.29 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.91 Total: 47.02 kcal Total: -74.20 2.37 -71.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484872390.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.132 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds