Wall clock time and date at job start Tue Mar 31 2020 21:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46492 * 120.00343 * 2 1 4 4 C 1.53003 * 109.47050 * 269.99900 * 3 2 1 5 5 O 1.42898 * 109.47208 * 64.99722 * 4 3 2 6 6 C 1.42900 * 114.00596 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47402 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.46979 * 65.00404 * 7 6 5 9 9 C 1.36938 * 120.00253 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99574 * 0.02562 * 9 8 7 11 11 C 1.38811 * 120.00349 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99675 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00356 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47142 * 59.99868 * 13 11 9 15 15 H 1.48494 * 109.47383 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47247 * 300.00506 * 13 11 9 17 17 C 1.34783 * 120.00044 * 179.97438 * 2 1 3 18 18 O 1.21275 * 120.00003 * 183.99926 * 17 2 1 19 19 C 1.50707 * 119.99532 * 3.99997 * 17 2 1 20 20 C 1.55915 * 115.92267 * 306.00214 * 19 17 2 21 21 C 1.54583 * 104.64420 * 199.15971 * 20 19 17 22 22 C 1.55925 * 104.64380 * 0.02562 * 21 20 19 23 23 C 1.55928 * 104.49696 * 289.71907 * 22 21 20 24 24 C 1.54583 * 104.64144 * 70.27920 * 23 22 21 25 25 C 1.56953 * 100.64947 * 33.77760 * 22 21 20 26 26 C 1.52999 * 112.02677 * 63.17614 * 25 22 21 27 27 C 1.52999 * 112.02440 * 189.69664 * 25 22 21 28 28 H 1.09001 * 109.47476 * 264.28356 * 1 2 3 29 29 H 1.09004 * 109.47231 * 24.28329 * 1 2 3 30 30 H 1.08999 * 109.47252 * 144.28446 * 1 2 3 31 31 H 1.08998 * 109.47410 * 29.99546 * 3 2 1 32 32 H 1.08994 * 109.47723 * 150.00199 * 3 2 1 33 33 H 1.09000 * 109.47719 * 184.99485 * 4 3 2 34 34 H 1.09000 * 109.47251 * 305.00176 * 4 3 2 35 35 H 1.08995 * 109.47152 * 300.00367 * 6 5 4 36 36 H 1.09011 * 109.46696 * 60.00156 * 6 5 4 37 37 H 1.09002 * 109.47183 * 184.99999 * 7 6 5 38 38 H 1.08999 * 109.47764 * 305.00186 * 7 6 5 39 39 H 0.97003 * 119.99716 * 0.02562 * 8 7 6 40 40 H 0.97000 * 119.99852 * 179.97438 * 12 11 9 41 41 H 1.09000 * 110.40347 * 80.37439 * 20 19 17 42 42 H 1.08996 * 110.40645 * 317.95129 * 20 19 17 43 43 H 1.09000 * 110.40507 * 241.20861 * 21 20 19 44 44 H 1.09007 * 110.49726 * 118.84120 * 21 20 19 45 45 H 1.09001 * 115.92309 * 160.83722 * 22 21 20 46 46 H 1.09001 * 110.39875 * 189.06941 * 23 22 21 47 47 H 1.08997 * 110.40221 * 311.49055 * 23 22 21 48 48 H 1.09002 * 110.40068 * 241.20861 * 24 23 22 49 49 H 1.09002 * 110.40460 * 118.79258 * 24 23 22 50 50 H 1.08997 * 109.47525 * 61.45392 * 26 25 22 51 51 H 1.09004 * 109.46545 * 181.45512 * 26 25 22 52 52 H 1.09000 * 109.47006 * 301.44666 * 26 25 22 53 53 H 1.09005 * 109.47489 * 58.54171 * 27 25 22 54 54 H 1.08999 * 109.47178 * 178.54711 * 27 25 22 55 55 H 1.09006 * 109.47031 * 298.54612 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 -1.4425 5 8 1.2061 1.9934 -2.0815 6 6 1.3324 2.4173 -3.4403 7 6 -0.0566 2.6903 -4.0206 8 7 -0.6662 3.8214 -3.3169 9 6 -1.9184 4.2512 -3.6669 10 1 -2.4568 3.7559 -4.4614 11 6 -2.4962 5.3226 -2.9997 12 7 -1.8403 5.9258 -2.0311 13 14 -4.2046 5.9084 -3.4766 14 1 -5.1775 4.8021 -3.2891 15 1 -4.5907 7.0583 -2.6201 16 1 -4.2037 6.3305 -4.9004 17 6 2.1389 -1.1672 0.0005 18 8 3.3494 -1.1685 0.0738 19 6 1.3880 -2.4708 -0.0899 20 6 0.2669 -2.6867 0.9719 21 6 0.0231 -4.2132 0.9779 22 6 1.0203 -4.7758 -0.0805 23 6 0.4516 -4.2912 -1.4491 24 6 0.6954 -2.7647 -1.4551 25 6 2.2245 -3.7855 0.1003 26 6 2.8386 -3.8782 1.4986 27 6 3.2788 -3.9582 -0.9948 28 1 -0.3634 -0.1024 1.0225 29 1 -0.3634 0.9368 -0.4226 30 1 -0.3634 -0.8344 -0.5999 31 1 1.6084 2.0283 0.5137 32 1 3.1499 1.1383 0.5138 33 1 3.0732 2.6063 -1.4440 34 1 2.9642 0.9129 -1.9816 35 1 1.9297 3.3281 -3.4827 36 1 1.8211 1.6349 -4.0210 37 1 0.0327 2.9275 -5.0808 38 1 -0.6821 1.8062 -3.8976 39 1 -0.1824 4.2664 -2.6035 40 1 -2.2439 6.6747 -1.5651 41 1 -0.6404 -2.1582 0.6794 42 1 0.6032 -2.3519 1.9531 43 1 -1.0041 -4.4351 0.6884 44 1 0.2383 -4.6303 1.9617 45 1 1.2427 -5.8404 -0.0070 46 1 0.9868 -4.7648 -2.2721 47 1 -0.6150 -4.5058 -1.5148 48 1 -0.2514 -2.2290 -1.5237 49 1 1.3505 -2.4878 -2.2811 50 1 3.2260 -4.8842 1.6594 51 1 3.6514 -3.1573 1.5869 52 1 2.0757 -3.6588 2.2457 53 1 2.8201 -3.7944 -1.9700 54 1 4.0807 -3.2354 -0.8444 55 1 3.6868 -4.9681 -0.9504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486498732.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:34 Heat of formation + Delta-G solvation = -82.155914 kcal Electronic energy + Delta-G solvation = -31783.795487 eV Core-core repulsion = 27820.415254 eV Total energy + Delta-G solvation = -3963.380233 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.49483 -40.10519 -38.92866 -36.83174 -36.15232 -33.49954 -32.95469 -32.08440 -31.86393 -30.15023 -29.13393 -27.63626 -27.43161 -25.54109 -25.15520 -24.12757 -23.10243 -22.80061 -21.46055 -20.08923 -19.23528 -18.99026 -17.87868 -17.48093 -17.23090 -16.89254 -16.62935 -16.43342 -16.20909 -15.84507 -15.55109 -15.39919 -14.86626 -14.64159 -14.55708 -14.26298 -13.97346 -13.69670 -13.63110 -13.59801 -13.26379 -13.18368 -13.05579 -13.00602 -12.83296 -12.74472 -12.72007 -12.60225 -12.51669 -12.45774 -12.17714 -12.04771 -11.92373 -11.71532 -11.66018 -11.49361 -11.28278 -10.94438 -10.83683 -10.80832 -10.65742 -10.46941 -9.64865 -8.97379 -7.91618 -5.20433 1.48560 1.51819 1.57025 1.57965 2.01438 2.58207 2.75120 3.26334 3.41923 3.45944 3.52122 3.69937 3.94982 4.04123 4.10024 4.17107 4.18663 4.24626 4.27954 4.30416 4.42756 4.44579 4.47383 4.50441 4.51429 4.52922 4.54860 4.58342 4.62238 4.63284 4.66647 4.80898 4.85287 4.88295 4.97800 5.00025 5.05890 5.08313 5.10173 5.12920 5.17329 5.19782 5.23712 5.30040 5.38139 5.43555 5.49992 5.50113 5.56986 5.58489 6.26239 6.30692 6.44671 7.17904 7.36218 8.11797 8.36587 9.31746 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016365 B = 0.002654 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.514874 B =10546.616120 C =11078.298806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.603 5.603 3 C 0.119 3.881 4 C 0.050 3.950 5 O -0.389 6.389 6 C 0.067 3.933 7 C 0.153 3.847 8 N -0.740 5.740 9 C -0.246 4.246 10 H 0.076 0.924 11 C -0.075 4.075 12 N -0.969 5.969 13 Si 0.974 3.026 14 H -0.277 1.277 15 H -0.296 1.296 16 H -0.278 1.278 17 C 0.540 3.460 18 O -0.571 6.571 19 C -0.098 4.098 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.086 4.086 23 C -0.113 4.113 24 C -0.107 4.107 25 C -0.041 4.041 26 C -0.135 4.135 27 C -0.136 4.136 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.024 0.976 39 H 0.375 0.625 40 H 0.250 0.750 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.118 0.882 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.050 0.950 50 H 0.068 0.932 51 H 0.037 0.963 52 H 0.062 0.938 53 H 0.055 0.945 54 H 0.041 0.959 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.415 -24.765 5.954 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.334 5.334 3 C -0.004 4.004 4 C -0.028 4.028 5 O -0.308 6.308 6 C -0.010 4.010 7 C 0.027 3.973 8 N -0.383 5.383 9 C -0.378 4.378 10 H 0.093 0.907 11 C -0.268 4.268 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.203 1.203 15 H -0.222 1.222 16 H -0.204 1.204 17 C 0.329 3.671 18 O -0.451 6.451 19 C -0.101 4.101 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.104 4.104 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.041 4.041 26 C -0.192 4.192 27 C -0.193 4.193 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.207 0.793 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.136 0.864 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.069 0.931 50 H 0.086 0.914 51 H 0.056 0.944 52 H 0.081 0.919 53 H 0.074 0.926 54 H 0.060 0.940 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.691 -24.771 5.979 26.617 hybrid contribution -0.234 1.355 -0.159 1.384 sum 7.457 -23.415 5.820 25.254 Atomic orbital electron populations 1.22175 0.78193 1.03993 1.02190 1.47790 1.07925 1.05331 1.72387 1.21520 0.98621 0.85316 0.94983 1.22913 0.86552 0.99238 0.94111 1.87974 1.29487 1.87555 1.25809 1.22640 0.97148 0.98370 0.82856 1.20833 0.91796 0.89978 0.94708 1.42474 1.17289 1.36161 1.42366 1.19611 0.93595 1.10621 1.13956 0.90657 1.25568 1.02559 0.99524 0.99108 1.69829 1.39521 1.25525 1.27064 0.85207 0.79900 0.77324 0.77286 1.20276 1.22208 1.20415 1.20304 0.87089 0.85065 0.74603 1.90616 1.15274 1.87756 1.51407 1.22883 0.96855 0.91317 0.98999 1.22816 0.96774 0.98243 0.97221 1.22615 0.99641 0.93326 0.99539 1.23642 0.93377 0.98601 0.94809 1.22607 1.01674 0.93156 0.97618 1.22621 0.99597 0.98131 0.94127 1.22309 0.94272 0.92028 0.95538 1.21702 1.00368 1.01664 0.95458 1.21714 0.98236 1.01448 0.97901 0.91315 0.91716 0.89655 0.89387 0.88351 0.91751 0.93929 0.93561 0.91222 0.94058 0.95830 0.79298 0.94080 0.90072 0.92077 0.90182 0.90785 0.86443 0.91159 0.90097 0.90710 0.93069 0.91351 0.94391 0.91950 0.92639 0.94024 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.83 8.57 127.77 1.10 2.93 16 2 N -0.60 -15.80 2.84 -846.78 -2.40 -18.21 16 3 C 0.12 3.20 5.82 86.38 0.50 3.70 16 4 C 0.05 1.43 6.28 71.98 0.45 1.88 16 5 O -0.39 -13.54 9.22 -148.98 -1.37 -14.91 16 6 C 0.07 2.23 6.07 71.98 0.44 2.67 16 7 C 0.15 6.23 6.65 86.38 0.57 6.81 16 8 N -0.74 -38.49 5.55 -343.45 -1.91 -40.40 16 9 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 10 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 11 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 12 N -0.97 -59.84 13.06 21.65 0.28 -59.55 16 13 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 C 0.54 14.45 6.94 87.66 0.61 15.06 16 18 O -0.57 -18.45 13.85 -3.01 -0.04 -18.49 16 19 C -0.10 -1.96 0.34 -49.52 -0.02 -1.98 16 20 C -0.11 -1.81 3.98 32.14 0.13 -1.68 16 21 C -0.11 -1.36 5.54 32.15 0.18 -1.18 16 22 C -0.09 -1.09 4.51 -7.38 -0.03 -1.12 16 23 C -0.11 -1.52 5.55 32.15 0.18 -1.35 16 24 C -0.11 -1.98 4.74 32.13 0.15 -1.83 16 25 C -0.04 -0.73 0.58 -49.40 -0.03 -0.76 16 26 C -0.13 -2.46 8.38 71.98 0.60 -1.86 16 27 C -0.14 -2.68 8.30 71.98 0.60 -2.08 16 28 H 0.07 1.39 7.55 -2.39 -0.02 1.37 16 29 H 0.06 1.93 7.24 -2.38 -0.02 1.91 16 30 H 0.09 1.81 3.66 -2.39 -0.01 1.80 16 31 H 0.09 2.37 8.07 -2.39 -0.02 2.35 16 32 H 0.10 2.57 7.37 -2.39 -0.02 2.55 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.38 20.99 7.67 -92.71 -0.71 20.28 16 40 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.08 1.22 5.62 -2.39 -0.01 1.21 16 42 H 0.06 1.05 7.28 -2.39 -0.02 1.03 16 43 H 0.08 0.80 7.84 -2.39 -0.02 0.78 16 44 H 0.07 0.79 7.53 -2.38 -0.02 0.77 16 45 H 0.12 1.12 8.14 -2.39 -0.02 1.11 16 46 H 0.07 0.91 7.52 -2.39 -0.02 0.89 16 47 H 0.08 0.91 7.83 -2.39 -0.02 0.89 16 48 H 0.07 1.36 5.89 -2.39 -0.01 1.35 16 49 H 0.05 1.10 7.29 -2.39 -0.02 1.09 16 50 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.04 0.89 7.38 -2.38 -0.02 0.87 16 52 H 0.06 1.05 5.43 -2.39 -0.01 1.03 16 53 H 0.05 1.08 5.42 -2.38 -0.01 1.07 16 54 H 0.04 1.05 6.94 -2.39 -0.02 1.03 16 55 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -69.20 406.07 3.49 -65.72 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.17 Total: 35.41 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 6.73 Total: 2.24 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -4.03 Total: -118.16 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -1.42 Total: -33.40 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -69.20 3.49 -65.72 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486498732.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.440 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds