Wall clock time and date at job start Tue Mar 31 2020 21:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.18666 * 2 1 4 4 C 1.47095 * 109.32591 * 240.44038 * 2 1 3 5 5 C 1.52564 * 114.32598 * 302.53480 * 4 2 1 6 6 H 1.09001 * 109.48614 * 34.95582 * 5 4 2 7 7 N 1.46505 * 109.49131 * 154.99898 * 5 4 2 8 8 C 1.34773 * 120.00098 * 204.99955 * 7 5 4 9 9 O 1.21283 * 119.99807 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99862 * 180.02562 * 8 7 5 11 11 C 1.53003 * 109.46985 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46913 * 180.02562 * 11 10 8 13 13 H 1.09002 * 110.45848 * 52.39643 * 12 11 10 14 14 C 1.54513 * 110.50936 * 174.99469 * 12 11 10 15 15 C 1.54482 * 104.05846 * 118.64667 * 14 12 11 16 16 O 1.44426 * 104.80394 * 23.97572 * 15 14 12 17 17 C 1.44421 * 105.27508 * 319.48994 * 16 15 14 18 18 C 1.50882 * 109.36350 * 274.99545 * 5 4 2 19 19 C 1.54290 * 110.23739 * 91.79541 * 18 5 4 20 20 N 1.47606 * 111.94149 * 319.69872 * 19 18 5 21 21 C 1.36937 * 118.63875 * 137.78300 * 20 19 18 22 22 H 1.08005 * 119.99652 * 205.97425 * 21 20 19 23 23 C 1.38808 * 120.00411 * 25.68718 * 21 20 19 24 24 N 1.31626 * 119.99520 * 17.71784 * 23 21 20 25 25 Si 1.86796 * 120.00480 * 197.71055 * 23 21 20 26 26 H 1.48500 * 109.47174 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47164 * 120.00486 * 25 23 21 28 28 H 1.48506 * 109.47061 * 240.00676 * 25 23 21 29 29 C 1.44577 * 122.71889 * 317.50216 * 20 19 18 30 30 H 1.09004 * 109.47042 * 300.43281 * 1 2 3 31 31 H 1.09001 * 109.47582 * 60.42981 * 1 2 3 32 32 H 1.08995 * 109.47247 * 180.42872 * 1 2 3 33 33 H 1.08994 * 109.47409 * 179.56817 * 3 2 1 34 34 H 1.09000 * 109.47377 * 299.57186 * 3 2 1 35 35 H 1.08999 * 109.46708 * 59.56631 * 3 2 1 36 36 H 1.08999 * 108.51615 * 63.79754 * 4 2 1 37 37 H 1.09002 * 108.50994 * 181.44307 * 4 2 1 38 38 H 0.97000 * 119.99784 * 25.00714 * 7 5 4 39 39 H 1.09001 * 109.47212 * 300.00117 * 10 8 7 40 40 H 1.08993 * 109.46902 * 60.00464 * 10 8 7 41 41 H 1.09001 * 109.46795 * 299.99826 * 11 10 8 42 42 H 1.08993 * 109.47168 * 59.99688 * 11 10 8 43 43 H 1.09001 * 110.51214 * 237.28788 * 14 12 11 44 44 H 1.09000 * 110.51183 * 0.02562 * 14 12 11 45 45 H 1.08998 * 110.37217 * 142.81505 * 15 14 12 46 46 H 1.09003 * 110.36876 * 265.14849 * 15 14 12 47 47 H 1.09002 * 110.37194 * 281.67827 * 17 16 15 48 48 H 1.09002 * 110.36571 * 159.34044 * 17 16 15 49 49 H 1.09000 * 109.36426 * 212.07997 * 18 5 4 50 50 H 1.09005 * 109.35972 * 331.81487 * 18 5 4 51 51 H 1.09003 * 109.13928 * 199.02077 * 19 18 5 52 52 H 1.08998 * 108.95938 * 80.26941 * 19 18 5 53 53 H 0.97001 * 119.99879 * 179.97438 * 24 23 21 54 54 H 1.08998 * 109.45194 * 211.02449 * 29 20 19 55 55 H 1.08999 * 109.44597 * 330.97124 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0328 1.4450 0.0000 4 6 2.0167 -0.6848 -1.2074 5 6 1.5192 -2.1189 -1.3603 6 1 0.5022 -2.1939 -0.9753 7 7 1.5345 -2.4932 -2.7766 8 6 0.7096 -3.4590 -3.2273 9 8 -0.0457 -4.0179 -2.4605 10 6 0.7259 -3.8445 -4.6841 11 6 -0.2976 -4.9551 -4.9292 12 6 -0.2806 -5.3469 -6.4081 13 1 0.7351 -5.5774 -6.7296 14 6 -1.2146 -6.5518 -6.6597 15 6 -2.2703 -6.0083 -7.6479 16 8 -1.6205 -4.9015 -8.3103 17 6 -0.8825 -4.2181 -7.2740 18 6 2.4209 -3.0467 -0.5840 19 6 1.8784 -3.2448 0.8467 20 7 1.3599 -1.9869 1.4191 21 6 0.1865 -2.0212 2.1242 22 1 -0.4287 -1.1361 2.1923 23 6 -0.2153 -3.1952 2.7464 24 7 0.6572 -4.1564 2.9642 25 14 -1.9939 -3.4109 3.2749 26 1 -2.7672 -2.1943 2.9184 27 1 -2.5768 -4.5881 2.5823 28 1 -2.0517 -3.6219 4.7437 29 6 2.0426 -0.7211 1.2710 30 1 -0.3633 0.5206 0.8861 31 1 -0.3634 0.5071 -0.8938 32 1 -0.3633 -1.0276 0.0077 33 1 3.1227 1.4505 0.0077 34 1 1.6732 1.9549 -0.8938 35 1 1.6605 1.9592 0.8861 36 1 1.7007 -0.1138 -2.0804 37 1 3.1063 -0.6998 -1.1811 38 1 2.1385 -2.0460 -3.3899 39 1 0.4722 -2.9764 -5.2925 40 1 1.7200 -4.1999 -4.9548 41 1 -0.0442 -5.8233 -4.3208 42 1 -1.2916 -4.5994 -4.6585 43 1 -0.6612 -7.3770 -7.1078 44 1 -1.6887 -6.8680 -5.7306 45 1 -2.5436 -6.7763 -8.3716 46 1 -3.1524 -5.6628 -7.1087 47 1 -1.5518 -3.5981 -6.6775 48 1 -0.0895 -3.6108 -7.7105 49 1 2.4684 -4.0112 -1.0894 50 1 3.4213 -2.6172 -0.5304 51 1 2.6794 -3.6197 1.4840 52 1 1.0744 -3.9803 0.8219 53 1 0.3766 -4.9766 3.3993 54 1 1.8477 -0.0992 2.1447 55 1 3.1148 -0.8954 1.1814 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489344162.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:52 Heat of formation + Delta-G solvation = -98.257364 kcal Electronic energy + Delta-G solvation = -31467.701588 eV Core-core repulsion = 27503.623143 eV Total energy + Delta-G solvation = -3964.078445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.31048 -40.46485 -39.73996 -36.34176 -35.97017 -35.39649 -33.29821 -32.40649 -31.47872 -29.54481 -28.69074 -28.19423 -27.20168 -25.80234 -25.17218 -23.82226 -23.17958 -21.41625 -21.15735 -21.05106 -19.52278 -18.60184 -17.91698 -17.47675 -17.15884 -16.78165 -16.63506 -16.42506 -16.11995 -15.89770 -15.60384 -15.22058 -15.17749 -14.88443 -14.58635 -14.48967 -14.04541 -13.76978 -13.54897 -13.43705 -13.17871 -13.14319 -13.02003 -12.75132 -12.73590 -12.58028 -12.46500 -12.42329 -12.36028 -12.21658 -12.00181 -11.86888 -11.75713 -11.60552 -11.46159 -11.40847 -11.36952 -11.25365 -11.02372 -10.75120 -10.67463 -10.39865 -9.95261 -8.60141 -7.83195 -5.25099 1.38950 1.43843 1.50849 1.79368 2.32700 2.51273 3.06526 3.30899 3.59869 3.68519 3.76214 3.81312 3.86773 4.02216 4.03143 4.15473 4.18490 4.28531 4.35485 4.38753 4.44257 4.47875 4.61202 4.64622 4.70988 4.73874 4.81835 4.84565 4.87803 4.90374 4.91553 4.92960 4.98535 5.02032 5.04068 5.07460 5.11397 5.12202 5.22199 5.25044 5.33952 5.37750 5.39451 5.49185 5.58067 5.62965 5.69297 5.76789 5.82014 5.85391 5.87244 6.44354 6.74657 7.21610 7.48198 7.99821 8.37996 9.22100 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.003027 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.604784 B = 9247.874391 C =10574.880865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.093 4.093 5 C 0.156 3.844 6 H 0.061 0.939 7 N -0.714 5.714 8 C 0.496 3.504 9 O -0.593 6.593 10 C -0.128 4.128 11 C -0.091 4.091 12 C -0.113 4.113 13 H 0.101 0.899 14 C -0.155 4.155 15 C 0.040 3.960 16 O -0.400 6.400 17 C 0.044 3.956 18 C -0.131 4.131 19 C 0.196 3.804 20 N -0.596 5.596 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.054 4.054 24 N -0.935 5.935 25 Si 0.947 3.053 26 H -0.266 1.266 27 H -0.302 1.302 28 H -0.290 1.290 29 C 0.161 3.839 30 H 0.035 0.965 31 H 0.049 0.951 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.414 0.586 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.103 0.897 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.111 0.889 49 H 0.046 0.954 50 H 0.070 0.930 51 H -0.007 1.007 52 H 0.027 0.973 53 H 0.243 0.757 54 H 0.035 0.965 55 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.141 4.745 -22.644 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.184 4.184 4 C -0.130 4.130 5 C 0.051 3.949 6 H 0.079 0.921 7 N -0.366 5.366 8 C 0.285 3.715 9 O -0.473 6.473 10 C -0.168 4.168 11 C -0.130 4.130 12 C -0.132 4.132 13 H 0.120 0.880 14 C -0.193 4.193 15 C -0.037 4.037 16 O -0.319 6.319 17 C -0.033 4.033 18 C -0.171 4.171 19 C 0.070 3.930 20 N -0.317 5.317 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.249 4.249 24 N -0.583 5.583 25 Si 0.776 3.224 26 H -0.190 1.190 27 H -0.230 1.230 28 H -0.217 1.217 29 C 0.035 3.965 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.252 0.748 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.121 0.879 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.129 0.871 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.012 0.988 52 H 0.045 0.955 53 H 0.052 0.948 54 H 0.054 0.946 55 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.599 4.287 -22.254 22.947 hybrid contribution -0.958 -0.794 1.193 1.724 sum 2.641 3.493 -21.061 21.511 Atomic orbital electron populations 1.21833 0.95991 1.00954 0.99526 1.20314 0.95535 0.96264 0.96490 1.21732 1.01276 0.93461 1.01906 1.20541 1.01172 0.92835 0.98487 1.20227 1.00139 0.94547 0.79962 0.92061 1.46112 1.41265 1.39057 1.10146 1.21578 0.79097 0.78867 0.92005 1.90776 1.41922 1.54518 1.60075 1.21738 1.03272 1.01429 0.90324 1.21313 0.98765 0.97910 0.94978 1.22534 1.01293 0.95082 0.94246 0.88024 1.23044 0.97438 0.98686 1.00105 1.23537 0.95260 0.89153 0.95736 1.89082 1.66367 1.43586 1.32893 1.23707 0.95680 0.94791 0.89105 1.22276 0.99294 0.98980 0.96517 1.20645 0.95410 0.87615 0.89357 1.43776 1.24731 1.03539 1.59698 1.19547 0.97327 0.97109 1.23252 0.91136 1.25636 1.00601 0.98789 0.99862 1.70227 1.33245 1.07818 1.46981 0.85498 0.82333 0.77497 0.77028 1.18985 1.23003 1.21744 1.20955 0.94279 0.86145 0.95148 0.94566 0.93193 0.93916 0.91603 0.91553 0.93198 0.90276 0.90673 0.74847 0.86175 0.85989 0.92710 0.93034 0.89547 0.90753 0.87911 0.92465 0.92418 0.87067 0.93568 0.91172 0.98847 0.95481 0.94753 0.94644 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 6.75 71.98 0.49 -3.97 16 2 C -0.08 -2.54 0.72 -53.38 -0.04 -2.57 16 3 C -0.13 -2.89 8.37 71.98 0.60 -2.29 16 4 C -0.09 -2.45 3.40 28.61 0.10 -2.35 16 5 C 0.16 5.22 1.98 44.16 0.09 5.31 16 6 H 0.06 2.74 4.75 -2.39 -0.01 2.73 16 7 N -0.71 -17.89 4.93 -446.51 -2.20 -20.09 16 8 C 0.50 14.27 7.65 87.66 0.67 14.94 16 9 O -0.59 -25.05 15.64 -3.04 -0.05 -25.10 16 10 C -0.13 -2.14 5.58 29.85 0.17 -1.97 16 11 C -0.09 -1.82 3.72 30.60 0.11 -1.70 16 12 C -0.11 -1.65 3.11 -9.78 -0.03 -1.68 16 13 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 14 C -0.16 -2.35 6.74 31.61 0.21 -2.13 16 15 C 0.04 0.63 7.63 72.49 0.55 1.18 16 16 O -0.40 -7.82 11.65 -148.98 -1.74 -9.55 16 17 C 0.04 0.65 6.51 72.48 0.47 1.12 16 18 C -0.13 -4.99 5.39 30.34 0.16 -4.83 16 19 C 0.20 9.89 4.72 86.61 0.41 10.30 16 20 N -0.60 -29.38 1.85 -697.71 -1.29 -30.67 16 21 C -0.24 -13.37 7.64 84.03 0.64 -12.72 16 22 H 0.07 3.82 6.44 -2.91 -0.02 3.80 16 23 C -0.05 -3.18 4.82 84.86 0.41 -2.77 16 24 N -0.94 -58.19 11.09 21.65 0.24 -57.95 16 25 Si 0.95 48.04 29.59 68.60 2.03 50.07 16 26 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 28 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 29 C 0.16 6.33 4.70 87.37 0.41 6.74 16 30 H 0.04 1.31 7.55 -2.39 -0.02 1.30 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.88 4.45 -2.39 -0.01 1.87 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.69 8.00 -2.39 -0.02 1.67 16 37 H 0.07 1.73 7.35 -2.39 -0.02 1.71 16 38 H 0.41 6.46 8.60 -92.71 -0.80 5.66 16 39 H 0.12 1.31 7.63 -2.39 -0.02 1.29 16 40 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 42 H 0.05 1.24 7.92 -2.39 -0.02 1.22 16 43 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.07 1.23 7.73 -2.39 -0.02 1.21 16 45 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.06 0.91 7.75 -2.39 -0.02 0.89 16 48 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.05 1.81 7.85 -2.39 -0.02 1.79 16 50 H 0.07 2.31 7.31 -2.38 -0.02 2.29 16 51 H -0.01 -0.36 8.04 -2.39 -0.02 -0.38 16 52 H 0.03 1.62 6.33 -2.39 -0.02 1.60 16 53 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 54 H 0.04 1.45 7.95 -2.39 -0.02 1.43 16 55 H 0.04 1.57 8.06 -2.39 -0.02 1.55 16 Total: -1.00 -77.03 407.03 2.48 -74.55 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.06 Total: 18.16 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.43 Total: 0.58 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -3.25 Total: -108.71 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -1.78 Total: -34.65 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -77.03 2.48 -74.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489344162.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.707 kcal (2) G-P(sol) polarization free energy of solvation -77.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds