Wall clock time and date at job start Tue Mar 31 2020 21:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.52212 * 2 1 4 4 C 1.53176 * 109.51798 * 239.81472 * 2 1 3 5 5 C 1.53174 * 109.03383 * 183.11442 * 4 2 1 6 6 C 1.53094 * 109.16599 * 56.97801 * 5 4 2 7 7 H 1.08997 * 109.48968 * 62.37827 * 6 5 4 8 8 C 1.53002 * 109.48289 * 182.40877 * 6 5 4 9 9 C 1.50694 * 109.46989 * 184.94277 * 8 6 5 10 10 O 1.21278 * 120.00256 * 0.02562 * 9 8 6 11 11 N 1.34779 * 120.00065 * 180.02562 * 9 8 6 12 12 C 1.46494 * 120.00488 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47413 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47219 * 179.97438 * 13 12 11 15 15 N 1.46497 * 109.47473 * 179.97438 * 14 13 12 16 16 C 1.36929 * 120.00090 * 270.00682 * 15 14 13 17 17 H 1.08000 * 120.00676 * 144.91505 * 16 15 14 18 18 C 1.38814 * 119.99935 * 324.91418 * 16 15 14 19 19 N 1.31619 * 119.99779 * 337.94794 * 18 16 15 20 20 Si 1.86801 * 120.00240 * 157.95192 * 18 16 15 21 21 H 1.48502 * 109.47086 * 59.99754 * 20 18 16 22 22 H 1.48498 * 109.47070 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47045 * 299.99969 * 20 18 16 24 24 C 1.46502 * 119.99970 * 89.99720 * 15 14 13 25 25 C 1.53004 * 117.49978 * 183.24342 * 24 15 14 26 26 C 1.53003 * 117.49783 * 114.58152 * 24 15 14 27 27 O 1.42901 * 109.41421 * 302.39398 * 6 5 4 28 28 C 1.42902 * 114.09948 * 61.15311 * 27 6 5 29 29 H 1.09000 * 109.46571 * 299.87617 * 1 2 3 30 30 H 1.08997 * 109.47084 * 59.87396 * 1 2 3 31 31 H 1.08995 * 109.47386 * 179.87352 * 1 2 3 32 32 H 1.08992 * 109.46775 * 180.12814 * 3 2 1 33 33 H 1.09009 * 109.46897 * 300.12982 * 3 2 1 34 34 H 1.08999 * 109.47252 * 60.12632 * 3 2 1 35 35 H 1.09005 * 109.54400 * 302.97840 * 4 2 1 36 36 H 1.09003 * 109.54705 * 63.15473 * 4 2 1 37 37 H 1.09002 * 109.52116 * 297.06941 * 5 4 2 38 38 H 1.09001 * 109.52232 * 176.88281 * 5 4 2 39 39 H 1.08995 * 109.46955 * 64.93938 * 8 6 5 40 40 H 1.08997 * 109.46801 * 304.94089 * 8 6 5 41 41 H 0.97005 * 119.99870 * 0.02562 * 11 9 8 42 42 H 1.08995 * 109.47392 * 59.99772 * 12 11 9 43 43 H 1.09008 * 109.47121 * 300.00014 * 12 11 9 44 44 H 1.08991 * 109.47043 * 300.00104 * 13 12 11 45 45 H 1.09002 * 109.47029 * 60.00285 * 13 12 11 46 46 H 1.09002 * 109.46986 * 300.00115 * 14 13 12 47 47 H 1.09005 * 109.47170 * 60.00175 * 14 13 12 48 48 H 0.97008 * 119.99907 * 175.76127 * 19 18 16 49 49 H 1.09000 * 115.54930 * 328.91121 * 24 15 14 50 50 H 1.08999 * 117.49640 * 359.97438 * 25 24 15 51 51 H 1.08992 * 117.50095 * 145.02466 * 25 24 15 52 52 H 1.08992 * 117.49719 * 214.97996 * 26 24 15 53 53 H 1.08997 * 117.49624 * 359.97438 * 26 24 15 54 54 H 1.09005 * 109.47854 * 58.82937 * 28 27 6 55 55 H 1.08999 * 109.48140 * 178.84387 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0418 -0.7259 -1.2480 5 6 3.5715 -0.7878 -1.1978 6 6 4.0043 -1.4816 0.0964 7 1 3.6317 -2.5058 0.1021 8 6 5.5319 -1.4938 0.1826 9 6 5.9603 -2.2818 1.3935 10 8 5.1261 -2.7845 2.1162 11 7 7.2706 -2.4279 1.6735 12 6 7.6872 -3.1944 2.8504 13 6 9.2147 -3.2066 2.9366 14 6 9.6498 -4.0066 4.1661 15 7 11.1124 -4.0188 4.2484 16 6 11.8245 -5.0134 3.6331 17 1 12.7855 -4.7956 3.1912 18 6 11.3111 -6.3020 3.5775 19 7 10.3996 -6.6853 4.4461 20 14 11.9142 -7.4920 2.2699 21 1 13.3774 -7.6950 2.4223 22 1 11.2147 -8.7928 2.4241 23 1 11.6295 -6.9339 0.9236 24 6 11.8132 -2.9667 4.9888 25 6 13.3430 -2.9918 4.9745 26 6 12.5826 -3.3796 6.2452 27 8 3.4695 -0.7737 1.2166 28 6 2.0417 -0.7242 1.2479 29 1 -0.3632 0.5119 0.8911 30 1 -0.3633 0.5158 -0.8888 31 1 -0.3634 -1.0276 -0.0023 32 1 3.1313 1.4410 -0.0023 33 1 1.6765 1.9569 -0.8889 34 1 1.6803 1.9556 0.8911 35 1 1.6367 -1.7375 -1.2733 36 1 1.7265 -0.1844 -2.1399 37 1 3.9779 0.2233 -1.2227 38 1 3.9415 -1.3512 -2.0545 39 1 5.8993 -0.4711 0.2659 40 1 5.9427 -1.9555 -0.7153 41 1 7.9378 -2.0255 1.0957 42 1 7.3203 -4.2173 2.7664 43 1 7.2759 -2.7335 3.7485 44 1 9.6257 -3.6677 2.0386 45 1 9.5821 -2.1838 3.0205 46 1 9.2388 -3.5450 5.0640 47 1 9.2824 -5.0295 4.0827 48 1 9.9961 -7.5642 4.3698 49 1 11.3259 -1.9917 4.9948 50 1 13.8279 -3.7914 4.4145 51 1 13.8620 -2.0334 4.9715 52 1 12.6017 -2.6762 7.0775 53 1 12.5669 -4.4340 6.5211 54 1 1.6432 -1.7386 1.2686 55 1 1.7160 -0.1876 2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490379124.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:24 Heat of formation + Delta-G solvation = -79.257027 kcal Electronic energy + Delta-G solvation = -29776.978926 eV Core-core repulsion = 25813.724398 eV Total energy + Delta-G solvation = -3963.254528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.22942 -40.22177 -38.84876 -36.71520 -36.17346 -35.22682 -34.17952 -33.27946 -31.43192 -30.28344 -28.16725 -27.37585 -26.79039 -25.61599 -24.56069 -23.05405 -22.63434 -22.43202 -21.56205 -21.07241 -19.81049 -18.26577 -17.85836 -17.48500 -17.31752 -17.02583 -16.54897 -16.40349 -16.27859 -15.93864 -15.74407 -15.26479 -15.09433 -15.02817 -14.56210 -14.36852 -13.99038 -13.83236 -13.66696 -13.52157 -13.27549 -13.03774 -12.93420 -12.82699 -12.78491 -12.65250 -12.60787 -12.47043 -12.43452 -12.26408 -12.03329 -11.93645 -11.81759 -11.75881 -11.43834 -11.35435 -11.29004 -11.11120 -10.92329 -10.76616 -10.45297 -10.20303 -10.02541 -8.53104 -7.78392 -5.44088 1.45533 1.47752 1.54217 1.74909 2.26099 2.50663 2.87555 3.15478 3.41804 3.51511 3.67956 3.75757 3.79995 3.84497 4.04663 4.16737 4.18794 4.24351 4.32519 4.36467 4.41589 4.47561 4.55869 4.56285 4.61087 4.63680 4.67016 4.73522 4.77407 4.81074 4.83431 4.89685 4.94706 4.95511 4.99410 5.03655 5.07132 5.08515 5.13919 5.15020 5.24381 5.31575 5.36922 5.40428 5.47873 5.52743 5.55322 5.55402 5.69294 5.86310 6.37817 6.45561 6.66219 7.15734 7.36546 7.86883 8.36615 9.11928 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.001957 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.126521 B =14307.650263 C =15070.922339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C -0.133 4.133 4 C -0.111 4.111 5 C -0.144 4.144 6 C 0.102 3.898 7 H 0.041 0.959 8 C -0.127 4.127 9 C 0.503 3.497 10 O -0.583 6.583 11 N -0.720 5.720 12 C 0.135 3.865 13 C -0.119 4.119 14 C 0.147 3.853 15 N -0.567 5.567 16 C -0.256 4.256 17 H 0.063 0.937 18 C -0.041 4.041 19 N -0.915 5.915 20 Si 0.953 3.047 21 H -0.277 1.277 22 H -0.297 1.297 23 H -0.275 1.275 24 C 0.101 3.899 25 C -0.179 4.179 26 C -0.224 4.224 27 O -0.389 6.389 28 C 0.069 3.931 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.415 0.585 42 H 0.040 0.960 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.027 0.973 47 H 0.067 0.933 48 H 0.249 0.751 49 H 0.114 0.886 50 H 0.074 0.926 51 H 0.113 0.887 52 H 0.100 0.900 53 H 0.052 0.948 54 H 0.036 0.964 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.321 17.565 -14.163 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.190 4.190 4 C -0.148 4.148 5 C -0.182 4.182 6 C 0.043 3.957 7 H 0.059 0.941 8 C -0.166 4.166 9 C 0.291 3.709 10 O -0.462 6.462 11 N -0.372 5.372 12 C 0.010 3.990 13 C -0.159 4.159 14 C 0.021 3.979 15 N -0.285 5.285 16 C -0.386 4.386 17 H 0.081 0.919 18 C -0.238 4.238 19 N -0.559 5.559 20 Si 0.781 3.219 21 H -0.203 1.203 22 H -0.224 1.224 23 H -0.201 1.201 24 C -0.007 4.007 25 C -0.217 4.217 26 C -0.265 4.265 27 O -0.308 6.308 28 C -0.008 4.008 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.156 0.844 41 H 0.251 0.749 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.085 0.915 48 H 0.059 0.941 49 H 0.131 0.869 50 H 0.093 0.907 51 H 0.131 0.869 52 H 0.119 0.881 53 H 0.071 0.929 54 H 0.055 0.945 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.839 17.098 -13.458 26.914 hybrid contribution 0.409 -1.365 -0.309 1.458 sum -15.430 15.734 -13.767 25.984 Atomic orbital electron populations 1.21780 0.93063 1.02019 1.02662 1.21198 0.96667 0.96708 0.95388 1.21779 1.01294 0.94099 1.01860 1.21671 0.95015 1.00456 0.97700 1.22233 0.96722 1.02444 0.96782 1.21856 0.92309 0.94739 0.86748 0.94128 1.21827 0.95402 1.02749 0.96612 1.21332 0.81885 0.80213 0.87432 1.90692 1.52668 1.50469 1.52418 1.46019 1.07598 1.54778 1.28851 1.21032 0.95182 0.94793 0.87973 1.22054 0.92074 1.01079 1.00700 1.20764 0.83033 1.00496 0.93622 1.43594 1.01656 1.25907 1.57316 1.19213 1.04093 0.87322 1.28015 0.91912 1.25801 1.00501 0.97920 0.99543 1.70181 1.31824 1.19704 1.34238 0.85570 0.77958 0.78077 0.80279 1.20275 1.22379 1.20058 1.21569 0.91043 0.93069 0.95038 1.23041 0.95167 1.02509 1.01010 1.23287 1.09924 1.00130 0.93113 1.87934 1.20677 1.75731 1.46433 1.22665 0.80697 0.98954 0.98443 0.92280 0.91205 0.92766 0.92626 0.91597 0.93023 0.92301 0.89776 0.89789 0.89023 0.86044 0.84370 0.74888 0.94203 0.92870 0.92660 0.91194 0.95475 0.91497 0.94147 0.86851 0.90707 0.86930 0.88128 0.92941 0.94521 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.49 71.98 0.61 -0.96 16 2 C -0.10 -1.41 0.77 -52.09 -0.04 -1.45 16 3 C -0.13 -1.75 8.08 71.98 0.58 -1.17 16 4 C -0.11 -1.40 4.81 30.71 0.15 -1.25 16 5 C -0.14 -1.86 5.06 30.68 0.16 -1.70 16 6 C 0.10 2.06 2.19 30.63 0.07 2.13 16 7 H 0.04 1.00 7.96 -2.39 -0.02 0.98 16 8 C -0.13 -2.25 5.41 29.85 0.16 -2.09 16 9 C 0.50 14.36 7.71 87.65 0.68 15.04 16 10 O -0.58 -22.60 15.42 10.74 0.17 -22.44 16 11 N -0.72 -19.31 5.56 -463.07 -2.57 -21.88 16 12 C 0.14 4.61 5.67 86.38 0.49 5.10 16 13 C -0.12 -4.28 5.65 30.59 0.17 -4.11 16 14 C 0.15 6.72 5.34 86.38 0.46 7.18 16 15 N -0.57 -27.28 2.78 -678.02 -1.88 -29.16 16 16 C -0.26 -13.54 8.63 84.04 0.73 -12.81 16 17 H 0.06 3.30 6.55 -2.91 -0.02 3.28 16 18 C -0.04 -2.21 4.96 84.86 0.42 -1.79 16 19 N -0.92 -53.41 11.33 21.65 0.25 -53.17 16 20 Si 0.95 44.09 29.61 68.60 2.03 46.12 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 24 C 0.10 4.11 6.56 44.99 0.30 4.41 16 25 C -0.18 -6.64 9.80 30.62 0.30 -6.34 16 26 C -0.22 -8.90 10.36 30.62 0.32 -8.59 16 27 O -0.39 -9.79 9.07 -135.21 -1.23 -11.01 16 28 C 0.07 1.41 5.54 72.01 0.40 1.81 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.83 6.14 -2.39 -0.01 0.82 16 33 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.97 6.62 -2.39 -0.02 0.95 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.14 1.54 8.14 -2.39 -0.02 1.53 16 41 H 0.41 8.24 8.47 -92.70 -0.79 7.46 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 44 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.03 1.20 8.07 -2.39 -0.02 1.18 16 47 H 0.07 3.59 5.35 -2.38 -0.01 3.58 16 48 H 0.25 14.24 8.32 -92.70 -0.77 13.47 16 49 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 50 H 0.07 3.11 6.37 -2.39 -0.02 3.10 16 51 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 52 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 53 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 54 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 55 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -70.61 426.81 2.76 -67.85 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.06 Total: 30.28 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 5.94 Total: -6.59 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -4.21 Total: -104.21 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.06 Total: -33.45 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.61 2.76 -67.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490379124.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.404 kcal (2) G-P(sol) polarization free energy of solvation -70.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds