Wall clock time and date at job start Tue Mar 31 2020 20:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00235 * 2 1 4 4 H 1.48503 * 109.47104 * 240.00009 * 3 2 1 5 5 H 1.48507 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47211 * 119.99779 * 3 2 1 7 7 C 1.38811 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99692 * 226.91493 * 7 2 1 9 9 N 1.36935 * 120.00441 * 46.90609 * 7 2 1 10 10 C 1.46494 * 120.00200 * 195.23982 * 9 7 2 11 11 C 1.53003 * 109.47447 * 270.00349 * 10 9 7 12 12 N 1.46501 * 109.47180 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99875 * 180.02562 * 12 11 10 14 14 O 1.21289 * 119.99739 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00169 * 179.97438 * 13 12 11 16 16 C 1.53176 * 109.54310 * 299.55096 * 15 13 12 17 17 C 1.53086 * 109.16445 * 183.15261 * 16 15 13 18 18 O 1.42901 * 109.41775 * 57.60781 * 17 16 15 19 19 C 1.42902 * 114.09776 * 298.84379 * 18 17 16 20 20 C 1.53098 * 109.41613 * 61.15759 * 19 18 17 21 21 C 1.46504 * 119.99922 * 15.24215 * 9 7 2 22 22 C 1.54240 * 108.89678 * 249.44871 * 21 9 7 23 23 C 1.50475 * 108.52378 * 159.25930 * 22 21 9 24 24 C 1.54069 * 112.49351 * 94.15374 * 23 22 21 25 25 C 1.54069 * 112.81639 * 318.28230 * 24 23 22 26 26 C 1.50471 * 112.49557 * 318.28341 * 25 24 23 27 27 C 1.45538 * 108.89651 * 126.56610 * 21 9 7 28 28 H 0.97003 * 119.99373 * 355.74899 * 1 2 3 29 29 H 1.09009 * 109.47064 * 30.00221 * 10 9 7 30 30 H 1.08998 * 109.47415 * 150.00147 * 10 9 7 31 31 H 1.08996 * 109.46782 * 300.00257 * 11 10 9 32 32 H 1.08998 * 109.46978 * 59.99531 * 11 10 9 33 33 H 0.96999 * 120.00135 * 359.97438 * 12 11 10 34 34 H 1.08998 * 109.54409 * 59.81998 * 15 13 12 35 35 H 1.09002 * 109.52288 * 303.05904 * 16 15 13 36 36 H 1.09006 * 109.51737 * 63.24472 * 16 15 13 37 37 H 1.09003 * 109.48055 * 297.62743 * 17 16 15 38 38 H 1.08998 * 109.48178 * 177.59483 * 17 16 15 39 39 H 1.08999 * 109.48094 * 301.17239 * 19 18 17 40 40 H 1.09000 * 109.49126 * 181.14198 * 19 18 17 41 41 H 1.08998 * 109.52491 * 182.48559 * 20 19 18 42 42 H 1.09000 * 109.52249 * 62.29390 * 20 19 18 43 43 H 1.08998 * 108.87009 * 7.96355 * 21 9 7 44 44 H 1.08999 * 109.62821 * 278.97737 * 22 21 9 45 45 H 1.09004 * 109.62574 * 39.55342 * 22 21 9 46 46 H 1.08992 * 108.87719 * 333.37776 * 23 22 21 47 47 H 1.09002 * 108.87909 * 214.92781 * 23 22 21 48 48 H 1.08998 * 108.81385 * 197.42014 * 24 23 22 49 49 H 1.09001 * 108.73129 * 79.08373 * 24 23 22 50 50 H 1.09007 * 108.87527 * 197.50858 * 25 24 23 51 51 H 1.08993 * 108.87655 * 79.06460 * 25 24 23 52 52 H 1.08999 * 109.62929 * 334.44827 * 26 25 24 53 53 H 1.09000 * 109.63080 * 213.86101 * 26 25 24 54 54 H 1.09000 * 108.89275 * 303.44331 * 27 21 9 55 55 H 1.08995 * 108.89703 * 62.02883 * 27 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 2.8335 -1.3507 0.6825 9 7 1.6509 -2.1999 -0.8669 10 6 2.1399 -3.5646 -0.6560 11 6 3.4668 -3.7509 -1.3947 12 7 3.9555 -5.1158 -1.1842 13 6 5.1165 -5.5097 -1.7439 14 8 5.7564 -4.7343 -2.4223 15 6 5.6195 -6.9136 -1.5269 16 6 5.8417 -7.1527 -0.0304 17 6 6.4266 -8.5527 0.1735 18 8 7.6445 -8.6708 -0.5645 19 6 7.4903 -8.5038 -1.9754 20 6 6.9482 -7.1017 -2.2656 21 6 0.7775 -1.9025 -2.0049 22 6 -0.5948 -2.5657 -1.7681 23 6 -1.6163 -1.8706 -2.6269 24 6 -1.8285 -2.5775 -3.9794 25 6 -0.5097 -3.0538 -4.6179 26 6 0.5933 -2.0389 -4.4861 27 6 1.4170 -2.3716 -3.2252 28 1 -0.4849 0.8378 0.0623 29 1 2.2904 -3.7359 0.4100 30 1 1.4081 -4.2760 -1.0385 31 1 3.3163 -3.5795 -2.4605 32 1 4.1986 -3.0394 -1.0121 33 1 3.4439 -5.7358 -0.6413 34 1 4.8872 -7.6261 -1.9066 35 1 6.5359 -6.4078 0.3584 36 1 4.8903 -7.0752 0.4960 37 1 5.7144 -9.2990 -0.1786 38 1 6.6266 -8.7123 1.2330 39 1 6.7921 -9.2494 -2.3555 40 1 8.4567 -8.6281 -2.4641 41 1 6.7882 -6.9878 -3.3378 42 1 7.6648 -6.3558 -1.9220 43 1 0.6397 -0.8233 -2.0710 44 1 -0.5438 -3.6199 -2.0402 45 1 -0.8720 -2.4686 -0.7183 46 1 -1.2853 -0.8486 -2.8113 47 1 -2.5655 -1.8408 -2.0919 48 1 -2.3209 -1.8866 -4.6636 49 1 -2.4763 -3.4404 -3.8254 50 1 -0.6817 -3.2523 -5.6758 51 1 -0.1975 -3.9790 -4.1337 52 1 0.1638 -1.0417 -4.3902 53 1 1.2365 -2.0808 -5.3651 54 1 2.3983 -1.9050 -3.3113 55 1 1.5448 -3.4523 -3.1637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499516592.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:35 Heat of formation + Delta-G solvation = -98.282279 kcal Electronic energy + Delta-G solvation = -31313.913947 eV Core-core repulsion = 27349.834422 eV Total energy + Delta-G solvation = -3964.079525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.31043 -40.27182 -39.47050 -37.14874 -35.68459 -34.72541 -33.61254 -32.78988 -32.07795 -31.70194 -29.54626 -26.92904 -25.95994 -25.54529 -24.59120 -24.30066 -22.73164 -22.15562 -21.09792 -20.62479 -19.95420 -18.92270 -18.27658 -17.28449 -16.94789 -16.84092 -16.55435 -16.42011 -16.19279 -15.95283 -15.64214 -15.43187 -15.25759 -14.99166 -14.87096 -14.50577 -14.32862 -14.07049 -13.85906 -13.70658 -13.58305 -13.27248 -13.05746 -12.85588 -12.82722 -12.76367 -12.51160 -12.47048 -12.29509 -12.26088 -11.95166 -11.70528 -11.58820 -11.47264 -11.44179 -11.26560 -11.13026 -11.00491 -10.93204 -10.88337 -10.43747 -10.23063 -10.00597 -8.90671 -8.04145 -5.03291 1.38616 1.47133 1.53515 1.62874 2.17149 2.53142 3.00881 3.04589 3.52958 3.62442 3.75540 3.79376 3.90739 4.02938 4.08911 4.16479 4.24585 4.26513 4.31008 4.36246 4.44106 4.47400 4.52671 4.53160 4.63180 4.64119 4.69515 4.72618 4.76230 4.81104 4.85270 4.97056 5.01428 5.04899 5.09103 5.11878 5.12917 5.19640 5.24846 5.27479 5.30552 5.36934 5.41535 5.48329 5.53724 5.55996 5.65862 5.76021 5.82597 6.04606 6.29219 6.29354 6.60039 7.13143 7.28956 7.92490 8.37197 9.00861 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011838 B = 0.002992 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.723092 B = 9355.056793 C =10693.089331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.001 3.999 3 Si 0.893 3.107 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.296 4.296 8 H 0.058 0.942 9 N -0.597 5.597 10 C 0.149 3.851 11 C 0.108 3.892 12 N -0.710 5.710 13 C 0.509 3.491 14 O -0.593 6.593 15 C -0.100 4.100 16 C -0.145 4.145 17 C 0.062 3.938 18 O -0.406 6.406 19 C 0.065 3.935 20 C -0.136 4.136 21 C 0.194 3.806 22 C -0.096 4.096 23 C -0.102 4.102 24 C -0.109 4.109 25 C -0.109 4.109 26 C -0.112 4.112 27 C -0.118 4.118 28 H 0.253 0.747 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.028 0.972 33 H 0.414 0.586 34 H 0.129 0.871 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.038 0.962 46 H 0.033 0.967 47 H 0.045 0.955 48 H 0.061 0.939 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.060 0.940 52 H 0.050 0.950 53 H 0.069 0.931 54 H 0.031 0.969 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -19.580 -5.717 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.201 4.201 3 Si 0.722 3.278 4 H -0.223 1.223 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.424 4.424 8 H 0.076 0.924 9 N -0.317 5.317 10 C 0.022 3.978 11 C -0.019 4.019 12 N -0.362 5.362 13 C 0.296 3.704 14 O -0.473 6.473 15 C -0.121 4.121 16 C -0.183 4.183 17 C -0.015 4.015 18 O -0.325 6.325 19 C -0.012 4.012 20 C -0.174 4.174 21 C 0.088 3.912 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.147 4.147 25 C -0.147 4.147 26 C -0.150 4.150 27 C -0.157 4.157 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.251 0.749 34 H 0.147 0.853 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.078 0.922 52 H 0.068 0.932 53 H 0.088 0.912 54 H 0.050 0.950 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.403 -18.922 -6.105 20.172 hybrid contribution 0.179 1.850 0.484 1.921 sum 3.582 -17.072 -5.621 18.327 Atomic orbital electron populations 1.70486 1.06371 1.26261 1.47184 1.24841 0.94621 0.99753 1.00882 0.86415 0.80020 0.83464 0.77936 1.22306 1.21902 1.20736 1.18952 1.11570 0.93256 1.18643 0.92400 1.44251 1.56127 1.04326 1.27025 1.20803 0.92302 0.86932 0.97791 1.22123 0.97216 0.82002 1.00547 1.45914 1.23342 1.14375 1.52588 1.21295 0.80235 0.90618 0.78245 1.90685 1.58191 1.56925 1.41515 1.21415 0.99402 0.92619 0.98692 1.22222 1.03297 0.99460 0.93333 1.22740 0.86456 0.94553 0.97722 1.87922 1.32895 1.92398 1.19303 1.22692 1.02819 0.94256 0.81392 1.22002 0.95561 0.98816 1.01009 1.19141 0.88867 0.98076 0.85104 1.21417 0.95613 0.97956 0.98552 1.21109 0.98229 0.98849 0.95861 1.21901 0.97355 1.00160 0.95241 1.21272 0.94267 0.98269 1.00867 1.21269 0.97453 0.99567 0.96714 1.21051 0.98295 1.00706 0.95613 0.93802 0.93224 0.91887 0.92600 0.95324 0.74919 0.85326 0.92731 0.88067 0.90498 0.87357 0.90735 0.87783 0.90482 0.93098 0.94046 0.92826 0.94291 0.94767 0.93597 0.91976 0.91305 0.90709 0.92175 0.93153 0.91241 0.95021 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.66 12.12 21.65 0.26 -47.40 16 2 C 0.00 0.03 4.05 84.86 0.34 0.38 16 3 Si 0.89 44.13 29.69 68.60 2.04 46.16 16 4 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 7 C -0.30 -15.85 9.49 84.03 0.80 -15.05 16 8 H 0.06 3.18 8.06 -2.91 -0.02 3.16 16 9 N -0.60 -27.52 2.38 -688.47 -1.64 -29.15 16 10 C 0.15 5.48 5.01 86.38 0.43 5.91 16 11 C 0.11 3.83 5.68 86.38 0.49 4.32 16 12 N -0.71 -18.81 5.47 -463.06 -2.53 -21.35 16 13 C 0.51 14.45 7.16 87.66 0.63 15.07 16 14 O -0.59 -23.07 15.97 -3.06 -0.05 -23.12 16 15 C -0.10 -1.85 2.61 -11.42 -0.03 -1.88 16 16 C -0.15 -2.26 5.30 30.68 0.16 -2.10 16 17 C 0.06 0.79 6.84 72.01 0.49 1.28 16 18 O -0.41 -7.41 10.77 -148.98 -1.60 -9.02 16 19 C 0.06 0.96 6.84 72.01 0.49 1.45 16 20 C -0.14 -2.71 4.74 30.69 0.15 -2.56 16 21 C 0.19 8.32 1.33 43.13 0.06 8.38 16 22 C -0.10 -3.74 4.46 30.20 0.13 -3.61 16 23 C -0.10 -3.56 5.31 30.14 0.16 -3.40 16 24 C -0.11 -2.86 5.85 31.32 0.18 -2.68 16 25 C -0.11 -2.76 5.31 30.14 0.16 -2.60 16 26 C -0.11 -3.40 5.61 30.20 0.17 -3.23 16 27 C -0.12 -4.33 3.26 28.74 0.09 -4.24 16 28 H 0.25 13.68 8.32 -92.71 -0.77 12.91 16 29 H 0.05 1.83 8.04 -2.38 -0.02 1.81 16 30 H 0.06 2.03 7.25 -2.39 -0.02 2.02 16 31 H 0.06 2.13 5.40 -2.39 -0.01 2.12 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.41 7.79 7.99 -92.71 -0.74 7.05 16 34 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.15 7.70 -2.38 -0.02 1.13 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.31 8.02 -2.39 -0.02 1.29 16 43 H 0.04 2.12 5.35 -2.39 -0.01 2.11 16 44 H 0.05 1.83 6.68 -2.39 -0.02 1.82 16 45 H 0.04 1.81 7.98 -2.38 -0.02 1.79 16 46 H 0.03 1.35 6.63 -2.39 -0.02 1.33 16 47 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 51 H 0.06 1.51 6.63 -2.39 -0.02 1.49 16 52 H 0.05 1.67 6.98 -2.39 -0.02 1.65 16 53 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 54 H 0.03 1.29 7.68 -2.39 -0.02 1.28 16 55 H 0.06 2.11 5.61 -2.39 -0.01 2.10 16 Total: -1.00 -68.65 406.73 1.51 -67.14 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.12 Total: 21.29 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 4.91 Total: -4.56 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -3.91 Total: -97.90 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.65 Total: -32.14 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.04 Total: 46.16 kcal Total: -68.65 1.51 -67.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499516592.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.139 kcal (2) G-P(sol) polarization free energy of solvation -68.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds