Wall clock time and date at job start Tue Mar 31 2020 22:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.56369 * 2 1 4 4 C 1.54480 * 110.50695 * 237.32305 * 2 1 3 5 5 O 1.44682 * 104.84214 * 265.33175 * 4 2 1 6 6 C 1.44427 * 105.13868 * 319.52287 * 5 4 2 7 7 H 1.09000 * 110.36955 * 281.60433 * 6 5 4 8 8 C 1.52999 * 110.37088 * 159.38238 * 6 5 4 9 9 C 1.50694 * 109.47640 * 67.95056 * 8 6 5 10 10 O 1.21286 * 119.99853 * 359.97438 * 9 8 6 11 11 N 1.34771 * 120.00525 * 179.97438 * 9 8 6 12 12 C 1.46499 * 120.00360 * 174.99733 * 11 9 8 13 13 H 1.09005 * 109.47018 * 326.50263 * 12 11 9 14 14 C 1.52999 * 109.47234 * 206.50057 * 12 11 9 15 15 N 1.46503 * 109.47127 * 54.99860 * 14 12 11 16 16 C 1.36940 * 120.00494 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99628 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00535 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99631 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46784 * 90.00434 * 20 18 16 22 22 H 1.48500 * 109.46940 * 209.99954 * 20 18 16 23 23 H 1.48497 * 109.47122 * 330.00320 * 20 18 16 24 24 C 1.53003 * 109.47165 * 86.50165 * 12 11 9 25 25 C 1.54266 * 110.03060 * 180.56452 * 24 12 11 26 26 C 1.54892 * 104.19727 * 217.10583 * 25 24 12 27 27 C 1.54888 * 102.74614 * 37.94437 * 26 25 24 28 28 C 1.53876 * 110.03219 * 63.39978 * 24 12 11 29 29 C 1.54480 * 104.90118 * 40.49311 * 6 5 4 30 30 H 1.09003 * 109.47034 * 297.31717 * 1 2 3 31 31 H 1.09002 * 109.47716 * 57.31794 * 1 2 3 32 32 H 1.09002 * 109.47459 * 177.32093 * 1 2 3 33 33 H 1.09001 * 109.46837 * 182.67997 * 3 2 1 34 34 H 1.09001 * 109.47181 * 302.68039 * 3 2 1 35 35 H 1.09003 * 109.46778 * 62.68260 * 3 2 1 36 36 H 1.09004 * 110.37557 * 24.16724 * 4 2 1 37 37 H 1.09003 * 110.37104 * 146.38747 * 4 2 1 38 38 H 1.09004 * 109.46930 * 187.94941 * 8 6 5 39 39 H 1.08996 * 109.47425 * 307.94518 * 8 6 5 40 40 H 0.97005 * 119.99912 * 354.98965 * 11 9 8 41 41 H 1.09006 * 109.47159 * 174.99543 * 14 12 11 42 42 H 1.08997 * 109.47469 * 294.99793 * 14 12 11 43 43 H 0.97007 * 119.99545 * 0.02562 * 15 14 12 44 44 H 0.97002 * 120.00793 * 180.02562 * 19 18 16 45 45 H 1.08994 * 110.01831 * 302.00369 * 24 12 11 46 46 H 1.08999 * 110.48698 * 335.78615 * 25 24 12 47 47 H 1.08997 * 110.48740 * 98.42643 * 25 24 12 48 48 H 1.08998 * 110.75379 * 279.62858 * 26 25 24 49 49 H 1.08996 * 110.75836 * 156.25921 * 26 25 24 50 50 H 1.08999 * 110.48635 * 203.38483 * 27 26 25 51 51 H 1.09001 * 110.48583 * 80.73893 * 27 26 25 52 52 H 1.08998 * 110.03239 * 238.57144 * 28 24 12 53 53 H 1.08999 * 110.03227 * 359.97438 * 28 24 12 54 54 H 1.09004 * 110.50910 * 94.61359 * 29 6 5 55 55 H 1.08992 * 110.50935 * 217.18647 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0674 1.4325 0.0000 4 6 2.0712 -0.7812 -1.2179 5 8 2.3076 -2.1204 -0.7240 6 6 2.8757 -1.9422 0.5919 7 1 3.9301 -1.6763 0.5171 8 6 2.7063 -3.2162 1.4221 9 6 3.5646 -4.3111 0.8429 10 8 4.2446 -4.0940 -0.1377 11 7 3.5768 -5.5315 1.4145 12 6 4.3242 -6.6257 0.7898 13 1 4.2928 -6.5147 -0.2942 14 6 3.6951 -7.9634 1.1840 15 7 2.2719 -7.9551 0.8365 16 6 1.4968 -9.0535 1.0971 17 1 1.9347 -9.9260 1.5593 18 6 0.1483 -9.0453 0.7683 19 7 -0.3854 -7.9820 0.2055 20 14 -0.9090 -10.5436 1.1245 21 1 -1.4946 -10.4242 2.4840 22 1 -2.0005 -10.6290 0.1212 23 1 -0.0726 -11.7684 1.0516 24 6 5.7782 -6.5863 1.2645 25 6 6.5810 -7.7255 0.6029 26 6 7.5526 -8.1995 1.7122 27 6 6.6840 -8.1037 2.9910 28 6 5.8436 -6.8268 2.7829 29 6 2.0714 -0.7814 1.2180 30 1 -0.3633 0.4716 0.9131 31 1 -0.3634 0.5549 -0.8649 32 1 -0.3634 -1.0265 -0.0480 33 1 3.1562 1.4121 -0.0481 34 1 1.6755 1.9676 -0.8650 35 1 1.7534 1.9383 0.9131 36 1 1.3309 -0.7973 -2.0179 37 1 3.0012 -0.3360 -1.5715 38 1 3.0098 -3.0224 2.4509 39 1 1.6614 -3.5256 1.4037 40 1 3.0907 -5.6854 2.2398 41 1 4.1948 -8.7715 0.6496 42 1 3.8060 -8.1148 2.2577 43 1 1.8787 -7.1716 0.4210 44 1 -1.3279 -7.9760 -0.0240 45 1 6.2248 -5.6228 1.0194 46 1 5.9171 -8.5370 0.3050 47 1 7.1370 -7.3511 -0.2567 48 1 8.4146 -7.5358 1.7801 49 1 7.8683 -9.2277 1.5358 50 1 7.3150 -8.0052 3.8743 51 1 6.0367 -8.9763 3.0788 52 1 6.3227 -5.9802 3.2747 53 1 4.8395 -6.9711 3.1817 54 1 1.2490 -1.1678 1.8202 55 1 2.7214 -0.1486 1.8221 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500100904.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:43 Heat of formation + Delta-G solvation = -118.868302 kcal Electronic energy + Delta-G solvation = -31055.655444 eV Core-core repulsion = 27090.683242 eV Total energy + Delta-G solvation = -3964.972202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.82 seconds Orbital eigenvalues (eV) -41.37125 -40.61621 -39.20249 -36.72829 -35.48825 -35.13992 -33.46837 -32.76584 -30.97892 -29.56061 -28.37102 -28.17248 -27.72853 -26.73156 -25.08525 -23.52098 -22.60627 -21.61565 -21.14583 -20.30100 -19.99541 -19.11845 -18.24570 -17.27943 -17.11120 -16.92362 -16.44507 -16.32715 -16.17306 -16.12862 -15.33218 -15.15178 -15.02424 -14.87483 -14.79441 -14.43256 -14.23953 -13.97117 -13.85938 -13.54251 -13.49264 -13.06838 -12.91075 -12.79811 -12.75075 -12.67494 -12.41585 -12.27942 -12.19329 -12.09793 -11.91671 -11.87440 -11.80563 -11.69935 -11.67273 -11.57580 -11.49003 -11.35580 -11.25815 -10.92071 -10.67531 -10.57859 -9.89181 -8.98515 -7.92959 -5.22902 1.47746 1.49450 1.57807 1.75358 2.30510 2.56451 3.00603 3.40735 3.48871 3.63719 3.67768 3.73111 3.81113 3.92268 3.95191 4.02982 4.09349 4.21487 4.21834 4.36337 4.39350 4.47273 4.53121 4.59532 4.59874 4.64963 4.71087 4.73184 4.75789 4.79524 4.80970 4.86896 4.87576 4.93212 4.93999 5.00613 5.06461 5.10838 5.13094 5.13809 5.18434 5.25758 5.29963 5.32275 5.38414 5.43516 5.50503 5.51113 5.56217 5.68073 6.00182 6.26984 6.66702 7.34119 7.37176 8.07955 8.32153 9.29972 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007731 B = 0.003607 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.927961 B = 7761.274958 C =10759.799761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 C -0.132 4.132 4 C 0.042 3.958 5 O -0.396 6.396 6 C 0.090 3.910 7 H 0.064 0.936 8 C -0.133 4.133 9 C 0.510 3.490 10 O -0.579 6.579 11 N -0.708 5.708 12 C 0.155 3.845 13 H 0.047 0.953 14 C 0.149 3.851 15 N -0.743 5.743 16 C -0.243 4.243 17 H 0.078 0.922 18 C -0.072 4.072 19 N -0.968 5.968 20 Si 0.972 3.028 21 H -0.284 1.284 22 H -0.300 1.300 23 H -0.270 1.270 24 C -0.087 4.087 25 C -0.127 4.127 26 C -0.115 4.115 27 C -0.122 4.122 28 C -0.115 4.115 29 C -0.136 4.136 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.141 0.859 39 H 0.098 0.902 40 H 0.408 0.592 41 H 0.032 0.968 42 H 0.045 0.955 43 H 0.372 0.628 44 H 0.250 0.750 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.079 0.921 51 H 0.060 0.940 52 H 0.069 0.931 53 H 0.063 0.937 54 H 0.084 0.916 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.975 15.832 7.410 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 C -0.190 4.190 4 C -0.035 4.035 5 O -0.316 6.316 6 C 0.032 3.968 7 H 0.082 0.918 8 C -0.172 4.172 9 C 0.298 3.702 10 O -0.458 6.458 11 N -0.359 5.359 12 C 0.050 3.950 13 H 0.065 0.935 14 C 0.023 3.977 15 N -0.386 5.386 16 C -0.375 4.375 17 H 0.096 0.904 18 C -0.265 4.265 19 N -0.618 5.618 20 Si 0.801 3.199 21 H -0.211 1.211 22 H -0.227 1.227 23 H -0.195 1.195 24 C -0.107 4.107 25 C -0.165 4.165 26 C -0.153 4.153 27 C -0.159 4.159 28 C -0.152 4.152 29 C -0.174 4.174 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.159 0.841 39 H 0.116 0.884 40 H 0.243 0.757 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.204 0.796 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.092 0.908 50 H 0.098 0.902 51 H 0.079 0.921 52 H 0.088 0.912 53 H 0.081 0.919 54 H 0.103 0.897 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.374 15.588 6.661 20.414 hybrid contribution -1.294 -0.609 -0.266 1.454 sum 10.080 14.979 6.395 19.154 Atomic orbital electron populations 1.21837 0.93167 1.01427 1.02843 1.21934 0.96877 0.96746 0.94074 1.21810 1.00867 0.93217 1.03060 1.23749 1.00081 0.82441 0.97182 1.89317 1.83046 1.27112 1.32083 1.22744 0.97310 0.93949 0.82761 0.91811 1.21858 1.00994 0.92492 1.01890 1.21078 0.81722 0.84125 0.83277 1.90655 1.44680 1.82531 1.27964 1.45915 1.52270 1.09402 1.28295 1.20976 0.91560 0.86064 0.96403 0.93518 1.21163 0.84023 0.94117 0.98401 1.42556 1.05176 1.16844 1.74002 1.19614 0.91096 0.94617 1.32180 0.90396 1.25540 0.98417 1.00324 1.02179 1.69842 1.12241 1.30440 1.49314 0.85164 0.78314 0.79443 0.76951 1.21073 1.22661 1.19513 1.21985 0.92938 0.99117 0.96688 1.22520 0.97996 0.97419 0.98563 1.22443 0.97410 1.01483 0.93916 1.22363 0.98043 0.97259 0.98262 1.22184 1.00570 0.98501 0.93961 1.23157 1.00510 0.95899 0.97795 0.90970 0.91747 0.94052 0.92284 0.91765 0.90870 0.89523 0.92094 0.84076 0.88394 0.75674 0.94987 0.93715 0.79561 0.94162 0.91965 0.91835 0.91886 0.90735 0.90768 0.90225 0.92141 0.91225 0.91867 0.89733 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.29 71.98 0.60 -1.81 16 2 C -0.10 -1.75 1.05 -51.17 -0.05 -1.81 16 3 C -0.13 -1.73 8.32 71.98 0.60 -1.13 16 4 C 0.04 1.04 6.74 72.49 0.49 1.53 16 5 O -0.40 -13.44 10.84 -139.96 -1.52 -14.96 16 6 C 0.09 2.38 2.74 31.10 0.09 2.46 16 7 H 0.06 1.75 7.96 -2.39 -0.02 1.73 16 8 C -0.13 -3.49 5.34 29.85 0.16 -3.33 16 9 C 0.51 17.75 7.72 87.66 0.68 18.43 16 10 O -0.58 -24.61 15.26 5.97 0.09 -24.52 16 11 N -0.71 -23.60 4.05 -442.54 -1.79 -25.39 16 12 C 0.16 5.54 1.86 44.99 0.08 5.63 16 13 H 0.05 2.02 7.61 -2.38 -0.02 2.00 16 14 C 0.15 5.89 5.27 86.38 0.46 6.35 16 15 N -0.74 -37.71 5.43 -343.44 -1.87 -39.58 16 16 C -0.24 -13.47 9.99 84.03 0.84 -12.63 16 17 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 18 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 19 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 20 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C -0.09 -2.49 2.96 -10.07 -0.03 -2.52 16 25 C -0.13 -3.33 6.19 31.67 0.20 -3.14 16 26 C -0.12 -2.36 6.91 31.89 0.22 -2.14 16 27 C -0.12 -2.53 6.83 31.67 0.22 -2.31 16 28 C -0.11 -2.71 5.62 31.32 0.18 -2.54 16 29 C -0.14 -2.49 5.92 31.61 0.19 -2.30 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.76 8.08 -2.39 -0.02 0.74 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 2.07 7.87 -2.39 -0.02 2.05 16 37 H 0.06 1.40 7.82 -2.39 -0.02 1.38 16 38 H 0.14 2.48 8.14 -2.38 -0.02 2.46 16 39 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.41 12.47 8.54 -92.70 -0.79 11.68 16 41 H 0.03 1.30 6.30 -2.38 -0.02 1.28 16 42 H 0.05 1.66 6.12 -2.39 -0.01 1.64 16 43 H 0.37 20.76 7.33 -92.70 -0.68 20.08 16 44 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.06 1.84 5.85 -2.39 -0.01 1.83 16 47 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 51 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 53 H 0.06 1.60 5.85 -2.39 -0.01 1.59 16 54 H 0.08 1.48 7.47 -2.38 -0.02 1.46 16 55 H 0.10 1.36 7.74 -2.39 -0.02 1.34 16 Total: -1.00 -73.26 421.43 1.98 -71.28 By element: Atomic # 1 Polarization: 50.15 SS G_CDS: -0.60 Total: 49.55 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.36 Total: -4.94 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -3.38 Total: -124.53 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.43 Total: -39.48 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -73.26 1.98 -71.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500100904.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.586 kcal (2) G-P(sol) polarization free energy of solvation -73.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.83 seconds