Wall clock time and date at job start Tue Mar 31 2020 22:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.75435 * 2 1 4 4 C 1.54384 * 110.84696 * 123.47349 * 2 1 3 5 5 O 1.43240 * 107.59139 * 139.54837 * 4 2 1 6 6 C 1.43651 * 109.96828 * 1.70672 * 5 4 2 7 7 H 1.09002 * 110.30769 * 94.58960 * 6 5 4 8 8 C 1.52997 * 110.30975 * 216.65567 * 6 5 4 9 9 C 1.50700 * 109.47317 * 293.55247 * 8 6 5 10 10 O 1.21277 * 120.00194 * 359.97438 * 9 8 6 11 11 N 1.34774 * 119.99818 * 179.97438 * 9 8 6 12 12 C 1.46500 * 120.00166 * 185.01679 * 11 9 8 13 13 H 1.09005 * 109.46723 * 2.74367 * 12 11 9 14 14 C 1.52994 * 109.47495 * 242.74319 * 12 11 9 15 15 N 1.46502 * 109.47442 * 54.99928 * 14 12 11 16 16 C 1.36929 * 120.00169 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00238 * 359.97438 * 16 15 14 18 18 C 1.38820 * 119.99971 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99747 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99903 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47349 * 89.99193 * 20 18 16 22 22 H 1.48497 * 109.46961 * 209.99701 * 20 18 16 23 23 H 1.48500 * 109.46953 * 329.99151 * 20 18 16 24 24 C 1.52999 * 109.46977 * 122.73823 * 12 11 9 25 25 C 1.54263 * 110.03297 * 57.24434 * 24 12 11 26 26 C 1.54959 * 104.16285 * 217.13266 * 25 24 12 27 27 C 1.54894 * 102.77456 * 37.89002 * 26 25 24 28 28 C 1.53874 * 110.03554 * 300.02200 * 24 12 11 29 29 C 1.54948 * 105.13802 * 335.57551 * 6 5 4 30 30 H 1.09004 * 109.47246 * 297.97961 * 1 2 3 31 31 H 1.09004 * 109.47234 * 57.98104 * 1 2 3 32 32 H 1.08997 * 109.47055 * 177.98377 * 1 2 3 33 33 H 1.09000 * 109.47311 * 182.01889 * 3 2 1 34 34 H 1.09004 * 109.46523 * 302.01743 * 3 2 1 35 35 H 1.08999 * 109.47225 * 62.01771 * 3 2 1 36 36 H 1.08996 * 109.83171 * 20.02999 * 4 2 1 37 37 H 1.09005 * 109.90366 * 259.09807 * 4 2 1 38 38 H 1.09004 * 109.47092 * 173.54470 * 8 6 5 39 39 H 1.09010 * 109.46829 * 53.54985 * 8 6 5 40 40 H 0.97006 * 120.00449 * 5.02222 * 11 9 8 41 41 H 1.09004 * 109.47308 * 174.99761 * 14 12 11 42 42 H 1.09006 * 109.47078 * 294.99569 * 14 12 11 43 43 H 0.97003 * 119.99696 * 359.97438 * 15 14 12 44 44 H 0.97005 * 119.99573 * 180.02562 * 19 18 16 45 45 H 1.09002 * 110.01757 * 178.63137 * 24 12 11 46 46 H 1.09002 * 110.48720 * 335.78585 * 25 24 12 47 47 H 1.09009 * 110.48782 * 98.42305 * 25 24 12 48 48 H 1.08995 * 110.72299 * 279.57643 * 26 25 24 49 49 H 1.09006 * 110.76868 * 156.21872 * 26 25 24 50 50 H 1.09001 * 110.48474 * 203.40530 * 27 26 25 51 51 H 1.08994 * 110.49017 * 80.76180 * 27 26 25 52 52 H 1.08991 * 110.03422 * 238.56795 * 28 24 12 53 53 H 1.08994 * 110.03108 * 359.95531 * 28 24 12 54 54 H 1.09002 * 111.12234 * 154.36344 * 29 6 5 55 55 H 1.09000 * 111.12353 * 278.52421 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0721 1.4307 0.0000 4 6 2.0794 -0.7958 1.2035 5 8 3.2044 -1.5539 0.7439 6 6 3.4464 -1.2797 -0.6453 7 1 4.1948 -0.4943 -0.7511 8 6 3.9050 -2.5494 -1.3652 9 6 5.2559 -2.9637 -0.8415 10 8 5.7987 -2.3078 0.0222 11 7 5.8609 -4.0633 -1.3329 12 6 7.1212 -4.5288 -0.7490 13 1 7.3865 -3.8934 0.0961 14 6 8.2273 -4.4625 -1.8039 15 7 8.3023 -3.1045 -2.3484 16 6 9.2249 -2.8042 -3.3146 17 1 9.8976 -3.5684 -3.6750 18 6 9.2955 -1.5176 -3.8309 19 7 10.1827 -1.2289 -4.7593 20 14 8.1324 -0.1957 -3.2070 21 1 8.7500 0.5014 -2.0504 22 1 7.8684 0.7834 -4.2918 23 1 6.8541 -0.8212 -2.7830 24 6 6.9588 -5.9728 -0.2702 25 6 6.5155 -6.8717 -1.4429 26 6 5.5280 -7.8767 -0.7980 27 6 4.7675 -6.9996 0.2274 28 6 5.8482 -6.0543 0.7918 29 6 2.0827 -0.8053 -1.2075 30 1 -0.3634 0.4822 0.9076 31 1 -0.3634 0.5449 -0.8714 32 1 -0.3633 -1.0270 -0.0362 33 1 3.1613 1.4066 -0.0362 34 1 1.6913 1.9635 -0.8714 35 1 1.7500 1.9414 0.9075 36 1 1.3107 -1.4684 1.5840 37 1 2.3926 -0.1095 1.9903 38 1 3.9740 -2.3553 -2.4356 39 1 3.1853 -3.3484 -1.1865 40 1 5.4618 -4.5464 -2.0734 41 1 9.1817 -4.7237 -1.3465 42 1 8.0054 -5.1646 -2.6076 43 1 7.6978 -2.4183 -2.0249 44 1 10.2323 -0.3296 -5.1198 45 1 7.8991 -6.3365 0.1443 46 1 6.0125 -6.2802 -2.2079 47 1 7.3722 -7.3959 -1.8667 48 1 6.0678 -8.6790 -0.2950 49 1 4.8435 -8.2793 -1.5448 50 1 4.3488 -7.6176 1.0217 51 1 3.9818 -6.4287 -0.2673 52 1 6.2493 -6.4583 1.7212 53 1 5.4255 -5.0650 0.9666 54 1 2.2185 -0.1639 -2.0784 55 1 1.4385 -1.6525 -1.4426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500100907.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:52 Heat of formation + Delta-G solvation = -117.539052 kcal Electronic energy + Delta-G solvation = -31749.637093 eV Core-core repulsion = 27784.722531 eV Total energy + Delta-G solvation = -3964.914561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -41.48252 -40.70064 -39.05637 -36.92185 -35.51678 -35.10535 -33.63871 -33.05901 -31.30965 -29.59674 -28.41781 -28.27375 -27.89347 -26.87879 -24.84291 -23.21757 -22.64245 -21.68984 -21.04328 -20.43771 -20.28126 -19.69620 -18.22488 -17.54728 -17.18101 -16.79067 -16.60887 -16.48125 -15.95765 -15.77377 -15.64281 -15.35818 -15.12842 -14.81633 -14.53652 -14.39914 -14.20059 -14.15491 -14.12178 -13.75662 -13.65628 -13.39839 -13.20634 -12.92693 -12.91523 -12.79261 -12.54439 -12.37359 -12.19647 -11.94911 -11.89782 -11.84646 -11.77190 -11.74440 -11.68433 -11.53143 -11.44381 -11.42362 -11.35698 -11.08289 -10.72662 -10.46239 -9.93203 -9.32110 -8.08425 -5.38883 1.25637 1.32762 1.37328 1.75698 2.26415 2.40109 2.85770 3.23738 3.35198 3.43957 3.66410 3.71230 3.80516 3.81825 3.87540 3.97601 4.02003 4.12801 4.20310 4.30827 4.34636 4.41710 4.51818 4.56637 4.62254 4.63236 4.70278 4.71822 4.72871 4.78793 4.79272 4.85471 4.87134 4.89961 4.91015 4.96632 5.00699 5.07189 5.09063 5.14351 5.15355 5.18076 5.27736 5.31855 5.40196 5.40810 5.48064 5.55707 5.65791 5.72961 6.13218 6.16823 6.64201 7.03286 7.38232 7.81615 7.99439 9.13249 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007550 B = 0.004761 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3707.615350 B = 5879.697838 C = 8994.733376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 C -0.142 4.142 4 C 0.049 3.951 5 O -0.392 6.392 6 C 0.094 3.906 7 H 0.040 0.960 8 C -0.138 4.138 9 C 0.507 3.493 10 O -0.580 6.580 11 N -0.704 5.704 12 C 0.145 3.855 13 H 0.068 0.932 14 C 0.144 3.856 15 N -0.757 5.757 16 C -0.228 4.228 17 H 0.065 0.935 18 C -0.054 4.054 19 N -0.978 5.978 20 Si 0.944 3.056 21 H -0.296 1.296 22 H -0.285 1.285 23 H -0.263 1.263 24 C -0.091 4.091 25 C -0.118 4.118 26 C -0.116 4.116 27 C -0.115 4.115 28 C -0.114 4.114 29 C -0.135 4.135 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.410 0.590 41 H 0.030 0.970 42 H 0.046 0.954 43 H 0.362 0.638 44 H 0.258 0.742 45 H 0.085 0.915 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.071 0.929 51 H 0.064 0.936 52 H 0.064 0.936 53 H 0.042 0.958 54 H 0.092 0.908 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.146 -8.010 9.784 28.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.096 4.096 3 C -0.199 4.199 4 C -0.027 4.027 5 O -0.312 6.312 6 C 0.036 3.964 7 H 0.058 0.942 8 C -0.178 4.178 9 C 0.295 3.705 10 O -0.459 6.459 11 N -0.357 5.357 12 C 0.040 3.960 13 H 0.086 0.914 14 C 0.017 3.983 15 N -0.402 5.402 16 C -0.359 4.359 17 H 0.083 0.917 18 C -0.246 4.246 19 N -0.629 5.629 20 Si 0.773 3.227 21 H -0.223 1.223 22 H -0.211 1.211 23 H -0.188 1.188 24 C -0.111 4.111 25 C -0.156 4.156 26 C -0.153 4.153 27 C -0.153 4.153 28 C -0.152 4.152 29 C -0.173 4.173 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.247 0.753 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.195 0.805 44 H 0.067 0.933 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.096 0.904 50 H 0.089 0.911 51 H 0.083 0.917 52 H 0.083 0.917 53 H 0.061 0.939 54 H 0.111 0.889 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -24.481 -7.753 10.396 27.704 hybrid contribution 0.180 1.363 -0.118 1.380 sum -24.301 -6.389 10.278 27.148 Atomic orbital electron populations 1.21716 0.91029 1.02899 1.02980 1.22108 0.98044 0.95546 0.93943 1.21860 0.99975 0.94952 1.03109 1.23439 0.88257 0.94456 0.96550 1.88513 1.50100 1.67075 1.25520 1.22632 0.97108 0.95126 0.81568 0.94181 1.21961 0.93802 0.99825 1.02176 1.21138 0.87960 0.79925 0.81515 1.90701 1.67213 1.53962 1.34019 1.45820 1.24009 1.28685 1.37168 1.21116 0.83269 0.96232 0.95403 0.91384 1.21229 0.96236 0.85873 0.94981 1.42734 1.41660 1.09053 1.46765 1.19103 1.09695 0.95447 1.11620 0.91666 1.25279 1.00640 0.99204 0.99467 1.69843 1.39443 1.20661 1.32967 0.85584 0.80167 0.80083 0.76875 1.22318 1.21125 1.18836 1.22036 1.00019 0.92241 0.96793 1.22442 0.99600 0.96906 0.96610 1.22474 0.97593 0.97181 0.98044 1.22295 0.97119 0.97165 0.98713 1.22083 0.95949 0.99345 0.97798 1.23442 0.94342 1.01131 0.98361 0.91631 0.91204 0.91465 0.94621 0.90912 0.91363 0.90007 0.92413 0.85984 0.85317 0.75258 0.95236 0.93638 0.80471 0.93285 0.89624 0.91575 0.91140 0.90998 0.90396 0.91069 0.91732 0.91725 0.93941 0.88930 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 8.50 71.98 0.61 -0.78 16 2 C -0.10 -1.58 0.94 -50.92 -0.05 -1.63 16 3 C -0.14 -2.47 8.47 71.98 0.61 -1.86 16 4 C 0.05 1.04 6.99 72.45 0.51 1.55 16 5 O -0.39 -11.58 10.41 -137.64 -1.43 -13.01 16 6 C 0.09 2.46 2.63 31.26 0.08 2.55 16 7 H 0.04 1.34 7.63 -2.39 -0.02 1.32 16 8 C -0.14 -3.29 5.45 29.85 0.16 -3.13 16 9 C 0.51 16.75 6.84 87.66 0.60 17.35 16 10 O -0.58 -25.04 14.88 8.32 0.12 -24.92 16 11 N -0.70 -20.42 3.72 -442.55 -1.64 -22.06 16 12 C 0.15 4.64 2.03 44.99 0.09 4.73 16 13 H 0.07 2.64 6.92 -2.38 -0.02 2.63 16 14 C 0.14 5.56 5.84 86.38 0.50 6.06 16 15 N -0.76 -37.59 5.24 -343.45 -1.80 -39.39 16 16 C -0.23 -13.44 10.47 84.04 0.88 -12.56 16 17 H 0.07 4.11 8.06 -2.91 -0.02 4.09 16 18 C -0.05 -3.31 5.50 84.86 0.47 -2.84 16 19 N -0.98 -64.03 13.97 21.65 0.30 -63.73 16 20 Si 0.94 49.50 27.74 68.60 1.90 51.40 16 21 H -0.30 -15.99 7.11 99.48 0.71 -15.28 16 22 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 23 H -0.26 -12.96 6.52 99.48 0.65 -12.31 16 24 C -0.09 -2.15 2.82 -10.07 -0.03 -2.18 16 25 C -0.12 -2.28 5.13 31.69 0.16 -2.12 16 26 C -0.12 -1.75 6.91 31.91 0.22 -1.53 16 27 C -0.12 -1.93 6.83 31.67 0.22 -1.71 16 28 C -0.11 -2.51 6.19 31.32 0.19 -2.32 16 29 C -0.14 -2.33 5.53 32.05 0.18 -2.15 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.07 0.63 8.12 -2.39 -0.02 0.62 16 33 H 0.03 0.80 7.53 -2.39 -0.02 0.78 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.43 7.81 -2.39 -0.02 1.41 16 37 H 0.06 1.26 7.84 -2.38 -0.02 1.24 16 38 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 40 H 0.41 9.56 7.02 -92.70 -0.65 8.91 16 41 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.05 1.65 7.12 -2.38 -0.02 1.64 16 43 H 0.36 18.35 4.78 -92.71 -0.44 17.91 16 44 H 0.26 16.11 8.31 -92.70 -0.77 15.34 16 45 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 1.29 5.98 -2.39 -0.01 1.27 16 47 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 48 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 50 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 53 H 0.04 1.16 7.00 -2.39 -0.02 1.15 16 54 H 0.09 1.46 8.04 -2.39 -0.02 1.44 16 55 H 0.10 1.33 7.94 -2.39 -0.02 1.31 16 Total: -1.00 -79.40 417.85 2.57 -76.84 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: -0.29 Total: 37.45 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 5.41 Total: -2.57 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -3.14 Total: -125.18 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.31 Total: -37.93 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 1.90 Total: 51.40 kcal Total: -79.40 2.57 -76.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500100907.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.704 kcal (2) G-P(sol) polarization free energy of solvation -79.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds