Wall clock time and date at job start Tue Mar 31 2020 22:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00051 * 2 1 4 4 C 1.52997 * 109.46992 * 180.02562 * 3 2 1 5 5 C 1.50691 * 109.47418 * 305.63610 * 4 3 2 6 6 O 1.21287 * 120.00291 * 129.37585 * 5 4 3 7 7 N 1.34780 * 120.00218 * 309.37154 * 5 4 3 8 8 C 1.47426 * 125.64300 * 356.00233 * 7 5 4 9 9 C 1.54915 * 104.82870 * 204.09096 * 8 7 5 10 10 C 1.55401 * 101.66643 * 323.07303 * 9 8 7 11 11 C 1.52995 * 110.69802 * 277.04833 * 10 9 8 12 12 C 1.53003 * 110.85239 * 153.69956 * 10 9 8 13 13 N 1.46496 * 109.46980 * 66.54115 * 12 10 9 14 14 C 1.36938 * 119.99696 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00355 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99757 * 180.02562 * 14 13 12 17 17 N 1.31612 * 120.00062 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00059 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47136 * 89.99882 * 18 16 14 20 20 H 1.48498 * 109.46880 * 210.00172 * 18 16 14 21 21 H 1.48499 * 109.46830 * 329.99988 * 18 16 14 22 22 C 1.47023 * 125.65114 * 175.95896 * 7 5 4 23 23 C 1.53007 * 109.47309 * 65.63867 * 4 3 2 24 24 C 1.52988 * 109.47288 * 179.97438 * 23 4 3 25 25 C 1.53005 * 109.47177 * 299.99712 * 24 23 4 26 26 C 1.52997 * 109.47273 * 60.00212 * 25 24 23 27 27 C 1.53002 * 109.47033 * 300.00327 * 26 25 24 28 28 H 1.09002 * 109.46784 * 299.99314 * 1 2 3 29 29 H 1.09000 * 109.47372 * 59.99419 * 1 2 3 30 30 H 1.08998 * 109.47001 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46610 * 60.00491 * 3 2 1 32 32 H 1.08997 * 109.47266 * 300.00113 * 3 2 1 33 33 H 1.08997 * 110.36625 * 322.92445 * 8 7 5 34 34 H 1.08997 * 110.37236 * 85.25510 * 8 7 5 35 35 H 1.08997 * 111.00308 * 81.06318 * 9 8 7 36 36 H 1.08995 * 111.00225 * 204.87873 * 9 8 7 37 37 H 1.08993 * 109.47367 * 173.36692 * 11 10 9 38 38 H 1.08994 * 109.47056 * 293.37264 * 11 10 9 39 39 H 1.09005 * 109.46697 * 53.37162 * 11 10 9 40 40 H 1.08996 * 109.46894 * 186.54262 * 12 10 9 41 41 H 1.08999 * 109.47136 * 306.54031 * 12 10 9 42 42 H 0.97000 * 119.99878 * 0.02562 * 13 12 10 43 43 H 0.97008 * 120.00359 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.88070 * 298.39135 * 22 7 5 45 45 H 1.08999 * 109.88298 * 59.40487 * 22 7 5 46 46 H 1.09001 * 109.46374 * 299.99638 * 23 4 3 47 47 H 1.08999 * 109.46818 * 59.99145 * 23 4 3 48 48 H 1.08997 * 109.47286 * 180.02562 * 24 23 4 49 49 H 1.08999 * 109.47760 * 59.99879 * 24 23 4 50 50 H 1.09001 * 109.46852 * 299.99904 * 25 24 23 51 51 H 1.09002 * 109.47314 * 180.02562 * 25 24 23 52 52 H 1.08992 * 109.47377 * 179.97438 * 26 25 24 53 53 H 1.09004 * 109.47207 * 59.99578 * 26 25 24 54 54 H 1.09001 * 109.46783 * 300.00119 * 27 26 25 55 55 H 1.09000 * 109.47206 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9713 0.3196 1.1537 6 8 4.7308 -0.6069 0.9643 7 7 3.5173 0.5754 2.3966 8 6 2.6612 1.7123 2.7815 9 6 2.9312 1.9180 4.2930 10 6 3.0939 0.4530 4.7854 11 6 1.7281 -0.1829 5.0516 12 6 3.9735 0.3933 6.0359 13 7 3.2852 1.0516 7.1489 14 6 3.8834 1.1212 8.3788 15 1 4.8624 0.6905 8.5283 16 6 3.2309 1.7445 9.4337 17 7 3.8060 1.8120 10.6156 18 14 1.5372 2.4889 9.1753 19 1 0.4985 1.4672 9.4622 20 1 1.3601 3.6453 10.0899 21 1 1.4067 2.9459 7.7684 22 6 3.7928 -0.2336 3.5930 23 6 3.9964 0.5514 -1.3151 24 6 5.5215 0.4312 -1.3160 25 6 6.1429 1.8222 -1.1746 26 6 5.6821 2.4555 0.1397 27 6 4.1568 2.5757 0.1407 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 2.9410 2.6045 2.2214 34 1 1.6117 1.4711 2.6130 35 1 3.8478 2.4857 4.4525 36 1 2.0843 2.4027 4.7787 37 1 1.8581 -1.2404 5.2811 38 1 1.2532 0.3165 5.8961 39 1 1.0998 -0.0777 4.1671 40 1 4.1682 -0.6477 6.2937 41 1 4.9176 0.9019 5.8407 42 1 2.4054 1.4374 7.0150 43 1 3.3499 2.2472 11.3528 44 1 3.3954 -1.2398 3.4597 45 1 4.8674 -0.2799 3.7697 46 1 3.5533 -0.4394 -1.4159 47 1 3.6810 1.1771 -2.1500 48 1 5.8499 -0.0195 -2.2525 49 1 5.8373 -0.1943 -0.4810 50 1 5.8272 2.4476 -2.0096 51 1 7.2295 1.7366 -1.1757 52 1 6.1251 3.4462 0.2407 53 1 5.9977 1.8299 0.9748 54 1 3.8412 3.2011 -0.6943 55 1 3.8285 3.0272 1.0769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500352358.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:23 Heat of formation + Delta-G solvation = -90.738811 kcal Electronic energy + Delta-G solvation = -32431.689229 eV Core-core repulsion = 28467.936813 eV Total energy + Delta-G solvation = -3963.752416 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.19386 -40.10921 -38.63745 -37.77420 -36.66778 -34.57134 -33.25010 -32.36619 -31.60408 -30.64865 -28.10698 -27.99882 -27.45257 -26.03132 -24.94088 -24.02166 -23.44875 -22.64000 -21.56788 -20.52851 -19.90922 -19.25750 -17.73124 -17.35662 -17.26833 -16.68607 -16.63097 -16.55294 -15.99418 -15.81823 -15.49265 -15.30786 -15.09159 -14.90459 -14.85112 -14.59191 -14.35429 -14.01954 -13.96353 -13.64171 -13.45018 -13.38170 -13.10086 -13.05110 -12.89376 -12.85589 -12.76367 -12.70280 -12.61530 -12.18571 -12.13051 -11.99768 -11.93293 -11.69488 -11.65741 -11.56313 -11.48343 -11.08008 -10.99142 -10.91492 -10.51887 -10.29564 -9.59609 -9.29396 -8.01471 -5.35533 1.37467 1.43545 1.50712 1.69739 1.97950 2.50072 2.77346 3.23736 3.30245 3.42214 3.54650 3.68513 3.72608 3.82849 3.93514 4.02905 4.10852 4.16395 4.21670 4.28845 4.31725 4.33842 4.41350 4.48999 4.52597 4.55191 4.59949 4.61669 4.65418 4.67804 4.73394 4.82357 4.83689 4.89155 4.89580 4.92800 4.99369 5.02781 5.05352 5.11430 5.15708 5.22037 5.23607 5.28248 5.29448 5.40121 5.42108 5.45851 5.67187 5.76163 6.21666 6.23931 6.59938 7.08948 7.24163 7.82915 8.05789 9.20395 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016607 B = 0.003098 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.638131 B = 9035.753751 C = 9725.725512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.056 3.944 4 C -0.066 4.066 5 C 0.546 3.454 6 O -0.576 6.576 7 N -0.610 5.610 8 C 0.095 3.905 9 C -0.120 4.120 10 C -0.072 4.072 11 C -0.128 4.128 12 C 0.173 3.827 13 N -0.747 5.747 14 C -0.236 4.236 15 H 0.050 0.950 16 C -0.065 4.065 17 N -0.987 5.987 18 Si 0.955 3.045 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.241 1.241 22 C 0.127 3.873 23 C -0.083 4.083 24 C -0.142 4.142 25 C -0.113 4.113 26 C -0.122 4.122 27 C -0.109 4.109 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.370 0.630 43 H 0.258 0.742 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.048 0.952 47 H 0.090 0.910 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.081 0.919 51 H 0.056 0.944 52 H 0.083 0.917 53 H 0.030 0.970 54 H 0.108 0.892 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.001 4.351 -30.432 31.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.020 4.020 4 C -0.069 4.069 5 C 0.337 3.663 6 O -0.456 6.456 7 N -0.343 5.343 8 C -0.027 4.027 9 C -0.158 4.158 10 C -0.073 4.073 11 C -0.186 4.186 12 C 0.046 3.954 13 N -0.393 5.393 14 C -0.367 4.367 15 H 0.068 0.932 16 C -0.256 4.256 17 N -0.637 5.637 18 Si 0.781 3.219 19 H -0.204 1.204 20 H -0.223 1.223 21 H -0.165 1.165 22 C 0.003 3.997 23 C -0.121 4.121 24 C -0.179 4.179 25 C -0.150 4.150 26 C -0.160 4.160 27 C -0.146 4.146 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.204 0.796 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.099 0.901 51 H 0.075 0.925 52 H 0.101 0.899 53 H 0.049 0.951 54 H 0.126 0.874 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.297 3.634 -30.480 31.551 hybrid contribution -0.498 -0.018 0.991 1.109 sum -7.795 3.616 -29.489 30.716 Atomic orbital electron populations 1.22870 0.79482 1.03320 1.01124 1.87926 1.21339 1.28345 1.95626 1.22957 0.90348 0.85411 1.03262 1.20898 0.95596 0.96747 0.93626 1.20553 0.78730 0.84360 0.82679 1.90563 1.37365 1.33751 1.83924 1.48451 1.50895 1.28044 1.06885 1.22906 0.95183 0.89436 0.95132 1.22925 1.03393 0.94976 0.94510 1.21690 0.96290 0.96644 0.92650 1.21726 0.94597 1.00424 1.01817 1.20624 0.93722 0.95089 0.85957 1.42552 1.20082 1.69602 1.07112 1.19009 1.00661 1.29791 0.87275 0.93186 1.25558 1.03042 1.02041 0.94987 1.69901 1.40699 1.50836 1.02279 0.85410 0.79745 0.77889 0.78810 1.20383 1.22324 1.16485 1.21740 0.99303 0.94614 0.84020 1.21276 0.95863 1.00349 0.94600 1.21879 0.95508 0.98177 1.02366 1.21504 0.99841 0.96001 0.97686 1.21538 0.95685 1.01203 0.97543 1.21765 0.95206 0.92886 1.04766 0.93097 0.92433 0.89762 0.90526 0.89851 0.87601 0.89497 0.91005 0.88839 0.92734 0.92732 0.90671 0.96315 0.96171 0.79554 0.93326 0.92073 0.93070 0.93356 0.89176 0.92110 0.91618 0.90059 0.92538 0.89872 0.95072 0.87352 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.88 9.73 -148.98 -1.45 -9.33 16 3 C 0.06 0.78 4.37 71.98 0.31 1.10 16 4 C -0.07 -1.17 0.34 -52.93 -0.02 -1.19 16 5 C 0.55 14.45 4.69 87.65 0.41 14.86 16 6 O -0.58 -20.08 13.70 -3.05 -0.04 -20.12 16 7 N -0.61 -14.92 3.30 -811.78 -2.68 -17.60 16 8 C 0.09 1.69 4.56 86.86 0.40 2.08 16 9 C -0.12 -2.79 5.74 32.07 0.18 -2.61 16 10 C -0.07 -2.02 0.62 -50.91 -0.03 -2.05 16 11 C -0.13 -3.32 8.28 71.98 0.60 -2.72 16 12 C 0.17 6.56 5.09 86.38 0.44 7.00 16 13 N -0.75 -33.75 4.96 -343.46 -1.70 -35.45 16 14 C -0.24 -13.47 10.47 84.03 0.88 -12.59 16 15 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 16 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 17 N -0.99 -63.35 13.97 21.65 0.30 -63.04 16 18 Si 0.96 43.78 27.73 68.60 1.90 45.69 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 21 H -0.24 -9.48 6.52 99.48 0.65 -8.83 16 22 C 0.13 3.61 6.04 86.73 0.52 4.14 16 23 C -0.08 -1.57 4.35 30.59 0.13 -1.44 16 24 C -0.14 -2.99 5.63 30.59 0.17 -2.82 16 25 C -0.11 -1.85 5.92 30.59 0.18 -1.67 16 26 C -0.12 -2.06 5.70 30.59 0.17 -1.89 16 27 C -0.11 -1.42 4.59 30.60 0.14 -1.28 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 0.85 4.46 -2.39 -0.01 0.84 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.11 1.37 4.42 -2.39 -0.01 1.36 16 34 H 0.09 1.27 6.60 -2.39 -0.02 1.26 16 35 H 0.07 1.84 8.02 -2.39 -0.02 1.82 16 36 H 0.09 2.03 8.04 -2.39 -0.02 2.01 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.52 6.69 -2.39 -0.02 1.51 16 39 H 0.07 1.56 7.43 -2.38 -0.02 1.54 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.02 0.81 8.11 -2.39 -0.02 0.79 16 42 H 0.37 15.40 4.08 -92.71 -0.38 15.02 16 43 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 44 H 0.06 1.81 7.84 -2.39 -0.02 1.79 16 45 H 0.05 1.63 7.82 -2.39 -0.02 1.61 16 46 H 0.05 1.15 7.84 -2.39 -0.02 1.13 16 47 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.07 1.91 5.19 -2.39 -0.01 1.90 16 50 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 52 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 53 H 0.03 0.73 7.22 -2.39 -0.02 0.72 16 54 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 55 H 0.08 0.96 5.02 -2.39 -0.01 0.95 16 Total: -1.00 -76.01 399.88 2.97 -73.03 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.43 Total: 29.65 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 6.21 Total: -2.82 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -4.08 Total: -116.10 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -1.49 Total: -29.45 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.90 Total: 45.69 kcal Total: -76.01 2.97 -73.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500352358.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.705 kcal (2) G-P(sol) polarization free energy of solvation -76.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds