Wall clock time and date at job start Tue Mar 31 2020 20:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86789 * 120.00306 * 2 1 4 4 H 1.48506 * 109.47248 * 270.00337 * 3 2 1 5 5 H 1.48503 * 109.47453 * 30.00103 * 3 2 1 6 6 H 1.48502 * 109.47527 * 150.00271 * 3 2 1 7 7 C 1.38820 * 119.99409 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99303 * 165.39071 * 7 2 1 9 9 N 1.36931 * 120.00409 * 345.39597 * 7 2 1 10 10 C 1.46933 * 120.62708 * 329.60092 * 9 7 2 11 11 C 1.53191 * 108.77323 * 233.62923 * 10 9 7 12 12 C 1.53037 * 109.31748 * 305.36671 * 11 10 9 13 13 C 1.53048 * 109.53632 * 61.36274 * 12 11 10 14 14 C 1.52997 * 109.49691 * 178.65234 * 13 12 11 15 15 O 1.42894 * 109.47123 * 184.56145 * 14 13 12 16 16 N 1.46497 * 109.49587 * 58.59143 * 13 12 11 17 17 C 1.34773 * 120.00377 * 63.07541 * 16 13 12 18 18 O 1.21288 * 119.99902 * 4.77745 * 17 16 13 19 19 C 1.50697 * 120.00398 * 184.77941 * 17 16 13 20 20 C 1.53006 * 109.47344 * 179.97438 * 19 17 16 21 21 C 1.54235 * 108.89410 * 296.39707 * 20 19 17 22 22 C 1.50559 * 108.48432 * 159.17635 * 21 20 19 23 23 C 1.54070 * 112.41437 * 94.25974 * 22 21 20 24 24 C 1.54067 * 112.81877 * 318.28751 * 23 22 21 25 25 C 1.50470 * 112.49313 * 318.28233 * 24 23 22 26 26 C 1.45538 * 108.89545 * 173.60361 * 20 19 17 27 27 C 1.46917 * 120.63396 * 149.62518 * 9 7 2 28 28 H 0.96999 * 119.99448 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.58436 * 113.84723 * 10 9 7 30 30 H 1.08995 * 109.70325 * 353.49290 * 10 9 7 31 31 H 1.08997 * 109.49347 * 185.41576 * 11 10 9 32 32 H 1.09003 * 109.49785 * 65.32285 * 11 10 9 33 33 H 1.09008 * 109.45790 * 301.34883 * 12 11 10 34 34 H 1.08993 * 109.46454 * 181.38755 * 12 11 10 35 35 H 1.08998 * 109.47183 * 304.56264 * 14 13 12 36 36 H 1.09003 * 109.47000 * 64.55834 * 14 13 12 37 37 H 0.96700 * 114.00121 * 180.02562 * 15 14 13 38 38 H 0.97001 * 119.99644 * 243.36059 * 16 13 12 39 39 H 1.09003 * 109.47310 * 300.00005 * 19 17 16 40 40 H 1.09000 * 109.47354 * 60.00277 * 19 17 16 41 41 H 1.09005 * 108.86958 * 54.99743 * 20 19 17 42 42 H 1.08997 * 109.62940 * 278.97224 * 21 20 19 43 43 H 1.09000 * 109.63409 * 39.55204 * 21 20 19 44 44 H 1.09002 * 108.92187 * 333.50923 * 22 21 20 45 45 H 1.08997 * 108.92043 * 215.01770 * 22 21 20 46 46 H 1.09003 * 108.81585 * 197.42019 * 23 22 21 47 47 H 1.09005 * 108.72089 * 79.08792 * 23 22 21 48 48 H 1.08996 * 108.87453 * 197.50700 * 24 23 22 49 49 H 1.08994 * 108.79597 * 79.00322 * 24 23 22 50 50 H 1.09001 * 109.63055 * 334.43900 * 25 24 23 51 51 H 1.09002 * 109.78555 * 213.96203 * 25 24 23 52 52 H 1.09005 * 108.89752 * 303.44309 * 26 20 19 53 53 H 1.09005 * 108.89712 * 62.03135 * 26 20 19 54 54 H 1.08999 * 109.58719 * 6.58245 * 27 9 7 55 55 H 1.09006 * 109.59077 * 246.15639 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0640 -1.2173 -0.2365 9 7 1.3587 -2.3691 0.2979 10 6 0.2131 -2.3725 1.2180 11 6 0.4736 -3.3979 2.3259 12 6 0.7772 -4.7588 1.6950 13 6 2.0350 -4.6526 0.8296 14 6 2.3568 -6.0212 0.2262 15 8 3.5884 -5.9464 -0.4944 16 7 3.1598 -4.2053 1.6547 17 6 3.5939 -4.9716 2.6749 18 8 3.1115 -6.0695 2.8566 19 6 4.6786 -4.4645 3.5898 20 6 4.9823 -5.5200 4.6551 21 6 3.7261 -5.7268 5.5257 22 6 3.8304 -7.0670 6.2036 23 6 4.4400 -6.9656 7.6150 24 6 5.6337 -5.9939 7.6818 25 6 6.5496 -6.1247 6.4952 26 6 6.1308 -5.0848 5.4359 27 6 1.7921 -3.6414 -0.2953 28 1 -0.4849 0.8401 0.0004 29 1 -0.6916 -2.6443 0.6740 30 1 0.0917 -1.3825 1.6574 31 1 -0.4088 -3.4799 2.9605 32 1 1.3252 -3.0769 2.9258 33 1 -0.0648 -5.0677 1.0754 34 1 0.9387 -5.4958 2.4815 35 1 2.4470 -6.7580 1.0244 36 1 1.5562 -6.3166 -0.4520 37 1 3.8551 -6.7803 -0.9051 38 1 3.5896 -3.3557 1.4694 39 1 5.5792 -4.2639 3.0095 40 1 4.3460 -3.5460 4.0735 41 1 5.2274 -6.4598 4.1602 42 1 3.6670 -4.9386 6.2763 43 1 2.8364 -5.7042 4.8963 44 1 4.4544 -7.7227 5.5963 45 1 2.8343 -7.5029 6.2801 46 1 4.7746 -7.9555 7.9253 47 1 3.6690 -6.6234 8.3053 48 1 6.2020 -6.1954 8.5898 49 1 5.2537 -4.9732 7.7232 50 1 6.4659 -7.1277 6.0768 51 1 7.5793 -5.9408 6.8018 52 1 6.9697 -4.9095 4.7623 53 1 5.8818 -4.1507 5.9395 54 1 2.7152 -3.4882 -0.8544 55 1 1.0162 -4.0166 -0.9626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501353355.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:34 Heat of formation + Delta-G solvation = -109.000894 kcal Electronic energy + Delta-G solvation = -32343.288904 eV Core-core repulsion = 28378.744585 eV Total energy + Delta-G solvation = -3964.544319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.55452 -40.09495 -38.58302 -37.34878 -35.45157 -34.51746 -33.80353 -32.87810 -32.33316 -31.51958 -28.80901 -27.28703 -26.57373 -25.62506 -24.57970 -23.92223 -22.54592 -21.61211 -20.90188 -20.11757 -20.00071 -18.66447 -18.17881 -17.88936 -16.89084 -16.73994 -16.48902 -16.35026 -15.80444 -15.57839 -15.43446 -15.32123 -15.02696 -14.68760 -14.61188 -14.24931 -14.15821 -13.91805 -13.69773 -13.62124 -13.44552 -13.24668 -13.04179 -12.94466 -12.84868 -12.77190 -12.48312 -12.43088 -12.18755 -11.97224 -11.77356 -11.61596 -11.49829 -11.37010 -11.36212 -11.21001 -11.16656 -11.14013 -10.98459 -10.92754 -10.54014 -10.13475 -9.69746 -8.63728 -7.85371 -5.34236 1.48914 1.50597 1.59301 1.90953 2.43957 2.52484 3.31150 3.34042 3.65750 3.70713 3.79404 3.83733 4.02106 4.08480 4.16340 4.26218 4.27753 4.28212 4.36361 4.41920 4.49349 4.54878 4.57160 4.60633 4.66299 4.73095 4.77988 4.84491 4.90168 4.91443 4.94334 4.99732 5.00870 5.06739 5.13581 5.19739 5.21599 5.27141 5.28641 5.36177 5.40384 5.42751 5.44341 5.52786 5.59307 5.64862 5.66244 5.69799 5.73771 5.84652 6.40667 6.86446 6.94279 7.16301 7.51554 7.84347 8.38786 9.20850 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.003383 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.344924 B = 8275.266950 C = 9125.819564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.046 4.046 3 Si 0.965 3.035 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.259 4.259 8 H 0.069 0.931 9 N -0.600 5.600 10 C 0.181 3.819 11 C -0.122 4.122 12 C -0.109 4.109 13 C 0.172 3.828 14 C 0.075 3.925 15 O -0.578 6.578 16 N -0.695 5.695 17 C 0.514 3.486 18 O -0.567 6.567 19 C -0.139 4.139 20 C -0.055 4.055 21 C -0.107 4.107 22 C -0.108 4.108 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.114 4.114 27 C 0.153 3.847 28 H 0.249 0.751 29 H -0.005 1.005 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.390 0.610 38 H 0.402 0.598 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.046 0.954 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.057 0.943 50 H 0.059 0.941 51 H 0.072 0.928 52 H 0.066 0.934 53 H 0.064 0.936 54 H 0.058 0.942 55 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.255 -13.793 11.637 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.242 4.242 3 Si 0.793 3.207 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.389 4.389 8 H 0.087 0.913 9 N -0.322 5.322 10 C 0.055 3.945 11 C -0.161 4.161 12 C -0.148 4.148 13 C 0.083 3.917 14 C -0.004 4.004 15 O -0.385 6.385 16 N -0.344 5.344 17 C 0.303 3.697 18 O -0.448 6.448 19 C -0.178 4.178 20 C -0.074 4.074 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.155 4.155 25 C -0.150 4.150 26 C -0.151 4.151 27 C 0.027 3.973 28 H 0.058 0.942 29 H 0.013 0.987 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.238 0.762 38 H 0.236 0.764 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.091 0.909 52 H 0.084 0.916 53 H 0.082 0.918 54 H 0.077 0.923 55 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 10.772 -13.791 11.949 21.190 hybrid contribution -0.147 0.936 -0.782 1.229 sum 10.625 -12.855 11.167 20.071 Atomic orbital electron populations 1.70175 1.06745 1.25761 1.55320 1.25834 0.95961 1.01449 1.00930 0.85317 0.78268 0.79685 0.77383 1.21528 1.22311 1.19014 1.19449 0.92101 0.85192 1.42152 0.91292 1.44184 1.35497 1.02640 1.49919 1.20551 0.87738 0.97047 0.89116 1.21907 1.00450 0.95484 0.98261 1.21631 0.96215 0.97618 0.99320 1.20740 0.86403 0.93296 0.91251 1.22513 0.86162 0.96753 0.94986 1.86445 1.40502 1.39434 1.72089 1.45860 1.33776 1.23438 1.31342 1.20959 0.83549 0.84579 0.80640 1.90539 1.59968 1.21481 1.72771 1.21899 0.97890 1.00979 0.97079 1.19732 0.95622 0.97467 0.94567 1.21376 0.97711 0.97447 0.97958 1.21205 0.99889 0.97228 0.96286 1.21921 0.97491 0.99753 0.96074 1.21333 0.96070 0.99615 0.98463 1.21281 0.99155 0.99119 0.95484 1.20546 0.97164 0.99222 0.98161 1.21083 0.97746 0.85999 0.92456 0.94221 0.98736 0.92880 0.91929 0.93077 0.91747 0.91246 0.91630 0.92947 0.76183 0.76388 0.88000 0.88636 0.92259 0.92283 0.92863 0.92866 0.93559 0.91988 0.92476 0.91547 0.92381 0.92196 0.90882 0.91551 0.91763 0.92331 0.96042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 11.22 21.65 0.24 -53.94 16 2 C -0.05 -2.49 4.96 84.86 0.42 -2.07 16 3 Si 0.97 43.56 29.58 68.60 2.03 45.59 16 4 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 5 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.26 -13.54 9.57 84.04 0.80 -12.73 16 8 H 0.07 3.48 7.87 -2.91 -0.02 3.46 16 9 N -0.60 -28.77 2.84 -699.10 -1.99 -30.76 16 10 C 0.18 8.59 5.27 86.36 0.46 9.05 16 11 C -0.12 -4.66 5.93 30.67 0.18 -4.48 16 12 C -0.11 -3.80 4.52 30.62 0.14 -3.66 16 13 C 0.17 5.91 0.45 3.68 0.00 5.91 16 14 C 0.07 2.26 5.57 71.98 0.40 2.66 16 15 O -0.58 -16.51 13.06 -148.98 -1.95 -18.46 16 16 N -0.69 -22.66 3.96 -422.57 -1.67 -24.34 16 17 C 0.51 15.42 6.74 87.66 0.59 16.01 16 18 O -0.57 -18.86 10.37 -3.05 -0.03 -18.89 16 19 C -0.14 -3.22 5.10 29.85 0.15 -3.07 16 20 C -0.05 -1.17 1.39 -12.65 -0.02 -1.19 16 21 C -0.11 -2.50 4.62 30.22 0.14 -2.36 16 22 C -0.11 -2.28 5.32 30.17 0.16 -2.12 16 23 C -0.11 -1.92 5.85 31.32 0.18 -1.74 16 24 C -0.12 -1.77 5.32 30.14 0.16 -1.61 16 25 C -0.11 -1.71 5.61 30.19 0.17 -1.54 16 26 C -0.11 -1.92 4.44 28.73 0.13 -1.79 16 27 C 0.15 6.30 5.07 86.36 0.44 6.74 16 28 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 29 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 30 H 0.05 2.85 6.16 -2.39 -0.01 2.84 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 1.99 7.53 -2.39 -0.02 1.97 16 33 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.07 2.40 6.60 -2.39 -0.02 2.38 16 35 H 0.07 2.07 5.99 -2.39 -0.01 2.05 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.39 7.37 9.12 -74.06 -0.68 6.70 16 38 H 0.40 13.69 8.42 -92.71 -0.78 12.91 16 39 H 0.10 2.07 8.05 -2.39 -0.02 2.05 16 40 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.06 1.44 7.26 -2.38 -0.02 1.43 16 42 H 0.06 1.30 6.96 -2.39 -0.02 1.28 16 43 H 0.05 1.55 5.76 -2.39 -0.01 1.53 16 44 H 0.05 1.17 6.63 -2.39 -0.02 1.15 16 45 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 48 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.06 0.92 6.62 -2.39 -0.02 0.91 16 50 H 0.06 0.98 6.98 -2.39 -0.02 0.96 16 51 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.07 1.03 8.04 -2.38 -0.02 1.01 16 53 H 0.06 1.06 7.46 -2.38 -0.02 1.04 16 54 H 0.06 2.47 7.77 -2.39 -0.02 2.46 16 55 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -62.60 399.18 0.56 -62.03 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.58 Total: 36.76 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 4.51 Total: 2.00 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -3.42 Total: -109.03 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.98 Total: -37.35 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -62.60 0.56 -62.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501353355.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.970 kcal (2) G-P(sol) polarization free energy of solvation -62.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds