Wall clock time and date at job start Tue Mar 31 2020 21:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00152 * 2 1 4 4 H 1.48507 * 109.47210 * 240.00097 * 3 2 1 5 5 H 1.48501 * 109.46821 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47331 * 119.99685 * 3 2 1 7 7 C 1.38819 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00401 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99755 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00180 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47344 * 179.97438 * 11 10 9 13 13 H 1.08999 * 110.88908 * 302.57173 * 12 11 10 14 14 C 1.55160 * 111.00615 * 66.45427 * 12 11 10 15 15 C 1.54317 * 102.94456 * 153.61251 * 14 12 11 16 16 N 1.47024 * 107.27477 * 337.80998 * 15 14 12 17 17 C 1.34772 * 125.65273 * 178.90360 * 16 15 14 18 18 O 1.21278 * 120.00159 * 180.02562 * 17 16 15 19 19 C 1.50703 * 119.99897 * 0.02562 * 17 16 15 20 20 C 1.52995 * 109.47415 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47488 * 179.97438 * 20 19 17 22 22 C 1.53003 * 109.47073 * 179.97438 * 21 20 19 23 23 C 1.53176 * 109.53870 * 175.00028 * 22 21 20 24 24 C 1.53091 * 109.21206 * 176.81585 * 23 22 21 25 25 O 1.42913 * 109.41195 * 302.48956 * 24 23 22 26 26 C 1.42906 * 114.15073 * 61.06034 * 25 24 23 27 27 C 1.53084 * 109.41372 * 298.87334 * 26 25 24 28 28 C 1.47426 * 108.70067 * 359.16660 * 16 15 14 29 29 H 0.96997 * 120.00094 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47580 * 59.99240 * 10 9 7 32 32 H 1.09007 * 109.46969 * 299.99950 * 10 9 7 33 33 H 1.09005 * 109.47540 * 59.99555 * 11 10 9 34 34 H 1.08998 * 109.47342 * 299.99487 * 11 10 9 35 35 H 1.08999 * 110.71446 * 35.25058 * 14 12 11 36 36 H 1.08997 * 110.72006 * 271.98445 * 14 12 11 37 37 H 1.08997 * 109.88745 * 218.39072 * 15 14 12 38 38 H 1.08999 * 110.01120 * 97.29920 * 15 14 12 39 39 H 1.09002 * 109.47278 * 59.99775 * 19 17 16 40 40 H 1.09005 * 109.47340 * 300.00303 * 19 17 16 41 41 H 1.09002 * 109.47214 * 59.99573 * 20 19 17 42 42 H 1.09005 * 109.46981 * 300.00360 * 20 19 17 43 43 H 1.08998 * 109.46419 * 59.99963 * 21 20 19 44 44 H 1.08994 * 109.46632 * 300.00044 * 21 20 19 45 45 H 1.08995 * 109.61149 * 54.78138 * 22 21 20 46 46 H 1.09002 * 109.52410 * 296.75427 * 23 22 21 47 47 H 1.09004 * 109.52533 * 56.88073 * 23 22 21 48 48 H 1.08998 * 109.48266 * 62.40567 * 24 23 22 49 49 H 1.08996 * 109.48151 * 182.44157 * 24 23 22 50 50 H 1.09004 * 109.47895 * 178.88906 * 26 25 24 51 51 H 1.09000 * 109.48922 * 58.86734 * 26 25 24 52 52 H 1.09007 * 109.52269 * 297.70364 * 27 26 25 53 53 H 1.09000 * 109.57238 * 177.55134 * 27 26 25 54 54 H 1.08999 * 110.36777 * 142.74427 * 28 16 15 55 55 H 1.09008 * 110.36803 * 265.06534 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0639 -4.8197 0.0021 12 6 1.8289 -6.1447 0.0026 13 1 2.4980 -6.2075 -0.8555 14 6 2.6080 -6.3366 1.3306 15 6 2.7127 -7.8714 1.4513 16 7 1.6349 -8.4482 0.6344 17 6 1.3993 -9.7636 0.4602 18 8 0.4777 -10.1272 -0.2393 19 6 2.2809 -10.7829 1.1348 20 6 1.8013 -12.1903 0.7746 21 6 2.6968 -13.2251 1.4589 22 6 2.2166 -14.6326 1.0991 23 6 3.1842 -15.6681 1.6802 24 6 2.6550 -17.0738 1.3845 25 8 1.3425 -17.2124 1.9328 26 6 0.3837 -16.3011 1.3920 27 6 0.8225 -14.8650 1.6895 28 6 0.8585 -7.3491 0.0322 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6842 -3.7142 0.8921 32 1 2.6854 -3.7149 -0.8879 33 1 0.4375 -4.7626 -0.8882 34 1 0.4369 -4.7615 0.8918 35 1 2.0491 -5.9210 2.1690 36 1 3.5985 -5.8863 1.2651 37 1 2.5896 -8.1708 2.4921 38 1 3.6803 -8.2096 1.0805 39 1 2.2320 -10.6474 2.2152 40 1 3.3096 -10.6528 0.7986 41 1 1.8505 -12.3256 -0.3059 42 1 0.7725 -12.3206 1.1105 43 1 2.6478 -13.0900 2.5393 44 1 3.7253 -13.0946 1.1225 45 1 2.1761 -14.7394 0.0152 46 1 4.1665 -15.5452 1.2239 47 1 3.2634 -15.5281 2.7584 48 1 2.6155 -17.2280 0.3062 49 1 3.3176 -17.8137 1.8336 50 1 -0.5897 -16.4854 1.8467 51 1 0.3141 -16.4441 0.3137 52 1 0.8530 -14.7094 2.7680 53 1 0.1158 -14.1669 1.2406 54 1 0.5494 -7.6128 -0.9793 55 1 -0.0112 -7.1175 0.6473 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501573862.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:47 Heat of formation + Delta-G solvation = -127.188243 kcal Electronic energy + Delta-G solvation = -28587.930306 eV Core-core repulsion = 24622.597324 eV Total energy + Delta-G solvation = -3965.332982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.18170 -40.37068 -39.00275 -36.88869 -36.73218 -34.58052 -33.63796 -32.54998 -31.99002 -30.57729 -29.60841 -28.27607 -25.93917 -24.94347 -24.43081 -23.75862 -23.09765 -21.99947 -21.22339 -20.94082 -20.03322 -19.11997 -18.09825 -17.36537 -17.13225 -16.94041 -16.73552 -16.59598 -16.19438 -15.78361 -15.56779 -15.36630 -15.30360 -15.10729 -14.90900 -14.56465 -14.35853 -14.05918 -13.83508 -13.66771 -13.38382 -13.20260 -13.06635 -12.84964 -12.78113 -12.73892 -12.67399 -12.45284 -12.32117 -12.21971 -12.21088 -11.96286 -11.82942 -11.62940 -11.61920 -11.54633 -11.48701 -11.17215 -11.15482 -10.90737 -10.87771 -10.40357 -9.66733 -8.99013 -7.94455 -5.23614 1.48202 1.51494 1.57681 1.61924 1.99041 2.57255 2.98115 3.37568 3.39692 3.61411 3.67845 3.76213 3.77906 3.84146 3.94068 4.09724 4.13373 4.17639 4.22173 4.30495 4.33675 4.36157 4.45771 4.50011 4.51576 4.58824 4.61789 4.67320 4.71204 4.73859 4.78657 4.79214 4.84680 4.85599 4.89505 4.93650 4.98480 5.01614 5.09202 5.13078 5.14659 5.20163 5.23171 5.29520 5.33070 5.38654 5.45168 5.46922 5.50453 5.53440 6.27846 6.27920 6.53897 7.13994 7.33783 8.11232 8.33031 9.29162 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.047560 B = 0.001320 C = 0.001298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.588529 B =21211.702140 C =21565.006834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.975 3.025 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.751 5.751 10 C 0.154 3.846 11 C -0.103 4.103 12 C -0.084 4.084 13 H 0.088 0.912 14 C -0.125 4.125 15 C 0.101 3.899 16 N -0.621 5.621 17 C 0.516 3.484 18 O -0.594 6.594 19 C -0.126 4.126 20 C -0.102 4.102 21 C -0.103 4.103 22 C -0.091 4.091 23 C -0.146 4.146 24 C 0.053 3.947 25 O -0.408 6.408 26 C 0.056 3.944 27 C -0.151 4.151 28 C 0.109 3.891 29 H 0.251 0.749 30 H 0.372 0.628 31 H 0.031 0.969 32 H 0.018 0.982 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.053 0.947 49 H 0.103 0.897 50 H 0.097 0.903 51 H 0.052 0.948 52 H 0.068 0.932 53 H 0.073 0.927 54 H 0.061 0.939 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.917 -34.534 5.801 36.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.096 0.904 9 N -0.394 5.394 10 C 0.028 3.972 11 C -0.141 4.141 12 C -0.104 4.104 13 H 0.106 0.894 14 C -0.163 4.163 15 C -0.020 4.020 16 N -0.354 5.354 17 C 0.307 3.693 18 O -0.475 6.475 19 C -0.165 4.165 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.109 4.109 23 C -0.184 4.184 24 C -0.024 4.024 25 O -0.327 6.327 26 C -0.021 4.021 27 C -0.189 4.189 28 C -0.014 4.014 29 H 0.060 0.940 30 H 0.204 0.796 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.121 0.879 50 H 0.115 0.885 51 H 0.070 0.930 52 H 0.087 0.913 53 H 0.091 0.909 54 H 0.079 0.921 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.554 -34.855 5.582 36.569 hybrid contribution -0.545 1.544 -0.518 1.717 sum 9.009 -33.311 5.064 34.877 Atomic orbital electron populations 1.69815 1.06733 1.26164 1.59504 1.25601 0.96386 1.01244 1.03650 0.85194 0.77193 0.78984 0.78291 1.20375 1.22235 1.20115 1.19643 0.91602 0.85408 1.41334 0.90443 1.42642 1.05677 1.01521 1.89512 1.20796 0.94049 0.84411 0.97935 1.21491 0.97864 0.92907 1.01839 1.22119 0.96693 0.91944 0.99657 0.89391 1.22748 1.02167 0.94594 0.96810 1.22279 0.90452 0.93304 0.96005 1.48724 1.32583 1.04950 1.49191 1.21240 0.85049 0.82235 0.80727 1.90682 1.34361 1.80301 1.42144 1.21714 0.99887 0.92442 1.02504 1.21335 0.99711 0.92412 1.00503 1.21561 0.99406 0.92231 1.00889 1.21208 0.94540 0.95189 0.99985 1.22216 0.99632 0.94460 1.02076 1.22754 0.83596 0.97604 0.98415 1.87894 1.20078 1.58520 1.66246 1.22677 0.92353 0.88672 0.98374 1.22269 0.97719 0.97031 1.01853 1.22150 0.94780 0.86204 0.98291 0.94030 0.79646 0.95101 0.96446 0.92647 0.91962 0.90552 0.88442 0.89216 0.88932 0.86798 0.86603 0.92906 0.92643 0.90977 0.90320 0.91424 0.89378 0.91201 0.92896 0.87909 0.88487 0.92979 0.91320 0.90874 0.92078 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 2 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 3 Si 0.97 45.83 29.55 68.60 2.03 47.85 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.25 -13.86 9.99 84.04 0.84 -13.02 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.75 -38.22 5.60 -343.45 -1.92 -40.15 16 10 C 0.15 5.86 6.11 86.38 0.53 6.38 16 11 C -0.10 -3.10 4.84 30.59 0.15 -2.95 16 12 C -0.08 -1.91 3.05 -9.47 -0.03 -1.94 16 13 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 14 C -0.13 -2.19 5.59 31.78 0.18 -2.01 16 15 C 0.10 1.36 6.49 86.73 0.56 1.92 16 16 N -0.62 -12.70 3.33 -812.22 -2.70 -15.41 16 17 C 0.52 11.52 7.85 87.66 0.69 12.20 16 18 O -0.59 -18.84 16.24 -3.02 -0.05 -18.88 16 19 C -0.13 -1.56 4.89 29.85 0.15 -1.42 16 20 C -0.10 -1.39 4.27 30.59 0.13 -1.26 16 21 C -0.10 -0.91 4.69 30.60 0.14 -0.76 16 22 C -0.09 -0.93 2.27 -10.68 -0.02 -0.95 16 23 C -0.15 -1.26 5.42 30.68 0.17 -1.09 16 24 C 0.05 0.55 6.85 72.01 0.49 1.05 16 25 O -0.41 -6.49 10.76 -148.98 -1.60 -8.09 16 26 C 0.06 0.72 6.84 72.01 0.49 1.21 16 27 C -0.15 -1.82 5.10 30.68 0.16 -1.66 16 28 C 0.11 2.62 6.37 86.78 0.55 3.17 16 29 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.37 20.27 7.67 -92.71 -0.71 19.56 16 31 H 0.03 1.12 7.51 -2.38 -0.02 1.10 16 32 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.06 1.92 8.11 -2.39 -0.02 1.90 16 35 H 0.08 1.44 8.01 -2.39 -0.02 1.42 16 36 H 0.10 1.52 8.13 -2.39 -0.02 1.50 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 42 H 0.05 0.95 6.62 -2.38 -0.02 0.93 16 43 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 53 H 0.07 0.95 6.75 -2.39 -0.02 0.93 16 54 H 0.06 1.65 8.04 -2.39 -0.02 1.64 16 55 H 0.06 1.58 8.03 -2.38 -0.02 1.56 16 Total: -1.00 -73.64 427.52 1.79 -71.85 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.12 Total: 27.48 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 5.64 Total: -5.09 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -4.34 Total: -115.12 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -1.65 Total: -26.98 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -73.64 1.79 -71.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501573862.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.339 kcal (2) G-P(sol) polarization free energy of solvation -73.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds