Wall clock time and date at job start Tue Mar 31 2020 21:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00141 * 2 1 4 4 C 1.53003 * 109.47089 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47342 * 64.99877 * 4 3 2 6 6 C 1.36935 * 120.00072 * 94.94679 * 5 4 3 7 7 H 1.07997 * 120.00525 * 173.50905 * 6 5 4 8 8 C 1.38810 * 119.99905 * 353.23484 * 6 5 4 9 9 N 1.31620 * 120.00274 * 332.77286 * 8 6 5 10 10 Si 1.86801 * 120.00236 * 152.76834 * 8 6 5 11 11 H 1.48504 * 109.47004 * 4.99856 * 10 8 6 12 12 H 1.48499 * 109.47374 * 124.99830 * 10 8 6 13 13 H 1.48501 * 109.47233 * 244.99969 * 10 8 6 14 14 C 1.46504 * 120.00066 * 274.95082 * 5 4 3 15 15 C 1.53005 * 109.46973 * 269.99753 * 14 5 4 16 16 N 1.46492 * 109.47173 * 180.02562 * 15 14 5 17 17 C 1.34776 * 120.00114 * 180.02562 * 16 15 14 18 18 O 1.21282 * 119.99846 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99898 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.63769 * 299.99543 * 19 17 16 21 21 C 1.53397 * 109.63858 * 179.57948 * 19 17 16 22 22 C 1.52978 * 108.45436 * 173.07408 * 21 19 17 23 23 C 1.50057 * 110.29125 * 49.13238 * 22 21 19 24 24 C 1.50706 * 117.96356 * 163.00098 * 23 22 21 25 25 C 1.29448 * 124.07972 * 342.97796 * 23 22 21 26 26 C 1.50689 * 117.96505 * 180.46763 * 25 23 22 27 27 C 1.50065 * 124.06728 * 0.49275 * 25 23 22 28 28 H 1.08991 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46594 * 299.99766 * 1 2 3 30 30 H 1.09000 * 109.47069 * 59.99809 * 1 2 3 31 31 H 1.08996 * 109.47221 * 60.00366 * 3 2 1 32 32 H 1.08994 * 109.47345 * 299.99545 * 3 2 1 33 33 H 1.09007 * 109.46851 * 305.00018 * 4 3 2 34 34 H 1.08999 * 109.47377 * 184.99876 * 4 3 2 35 35 H 0.96995 * 120.00413 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.47075 * 29.99860 * 14 5 4 37 37 H 1.09002 * 109.47306 * 150.00059 * 14 5 4 38 38 H 1.09003 * 109.46865 * 300.00115 * 15 14 5 39 39 H 1.08994 * 109.47116 * 60.00036 * 15 14 5 40 40 H 0.97001 * 120.00054 * 359.97438 * 16 15 14 41 41 H 1.08989 * 109.47124 * 60.00455 * 20 19 17 42 42 H 1.09003 * 109.46930 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.46944 * 299.99761 * 20 19 17 44 44 H 1.09002 * 109.64327 * 292.55764 * 21 19 17 45 45 H 1.08999 * 109.64699 * 53.19292 * 21 19 17 46 46 H 1.09004 * 109.18005 * 288.94530 * 22 21 19 47 47 H 1.08998 * 109.27924 * 169.38413 * 22 21 19 48 48 H 1.08996 * 109.47244 * 186.04309 * 24 23 22 49 49 H 1.09009 * 109.46744 * 306.04236 * 24 23 22 50 50 H 1.08995 * 109.46934 * 66.04098 * 24 23 22 51 51 H 1.09004 * 109.47121 * 174.37768 * 26 25 23 52 52 H 1.09000 * 109.47707 * 294.37758 * 26 25 23 53 53 H 1.09003 * 109.47118 * 54.37863 * 26 25 23 54 54 H 1.09008 * 109.35417 * 222.65854 * 27 25 23 55 55 H 1.08997 * 109.36321 * 103.08095 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.3631 1.3486 -2.3062 7 1 4.7861 0.8951 -3.1903 8 6 4.2069 2.7263 -2.2400 9 7 3.2597 3.2459 -1.4883 10 14 5.3411 3.8430 -3.2178 11 1 6.2347 3.0176 -4.0696 12 1 4.5301 4.7424 -4.0772 13 1 6.1603 4.6568 -2.2839 14 6 4.0015 -0.8952 -1.3778 15 6 5.3684 -1.4209 -0.9351 16 7 5.3944 -2.8802 -1.0607 17 6 6.5049 -3.5659 -0.7244 18 8 7.4829 -2.9747 -0.3182 19 6 6.5318 -5.0671 -0.8542 20 6 5.4416 -5.6791 0.0279 21 6 7.9042 -5.5976 -0.4205 22 6 7.8469 -7.1261 -0.3962 23 6 7.2582 -7.6452 -1.6751 24 6 7.4704 -9.0987 -2.0120 25 6 6.5790 -6.9224 -2.5069 26 6 6.0410 -7.5890 -3.7466 27 6 6.2945 -5.4617 -2.3134 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5680 0.8410 34 1 3.9786 2.1764 0.0889 35 1 3.1507 4.2086 -1.4417 36 1 3.2243 -1.3276 -0.7475 37 1 3.8239 -1.1741 -2.4164 38 1 6.1455 -0.9885 -1.5653 39 1 5.5460 -1.1421 0.1035 40 1 4.6121 -3.3531 -1.3852 41 1 4.4673 -5.3061 -0.2874 42 1 5.4638 -6.7647 -0.0677 43 1 5.6177 -5.4026 1.0675 44 1 8.6638 -5.2738 -1.1320 45 1 8.1450 -5.2214 0.5738 46 1 7.2297 -7.4481 0.4426 47 1 8.8553 -7.5222 -0.2756 48 1 7.0824 -9.3007 -3.0103 49 1 8.5361 -9.3265 -1.9833 50 1 6.9464 -9.7202 -1.2859 51 1 5.4128 -6.8860 -4.2937 52 1 6.8710 -7.9032 -4.3796 53 1 5.4501 -8.4601 -3.4635 54 1 5.2572 -5.2574 -2.5789 55 1 6.9517 -4.8772 -2.9572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508054815.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:13 Heat of formation + Delta-G solvation = -75.872885 kcal Electronic energy + Delta-G solvation = -30753.843555 eV Core-core repulsion = 26790.735774 eV Total energy + Delta-G solvation = -3963.107781 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.70913 -39.56125 -38.90156 -37.41535 -35.80068 -35.29487 -33.33871 -32.69726 -30.98059 -29.62749 -28.82315 -27.79911 -27.05947 -26.75034 -25.56693 -24.00138 -23.74079 -22.61107 -22.01822 -20.35680 -18.75242 -18.00667 -17.47934 -17.38252 -17.01568 -16.62564 -16.36001 -16.24285 -15.78779 -15.68462 -15.60839 -15.45938 -15.29952 -15.11151 -14.95874 -14.45551 -14.27164 -13.74877 -13.71025 -13.55766 -13.31132 -13.12049 -12.97650 -12.92146 -12.86658 -12.77718 -12.60738 -12.50168 -12.39144 -12.37927 -12.34989 -12.22806 -11.85669 -11.80448 -11.71495 -11.58375 -11.56527 -11.16291 -10.64529 -10.47365 -10.24797 -10.03972 -9.33453 -8.88771 -7.88257 -5.13829 1.33905 1.45601 1.51940 1.59107 1.65030 2.18219 2.56041 3.20992 3.26698 3.47961 3.59932 3.76414 3.82952 4.08537 4.11878 4.26537 4.29314 4.31900 4.37372 4.50153 4.55523 4.56859 4.63819 4.64455 4.70916 4.74455 4.77364 4.84344 4.85461 4.87080 4.88033 4.91946 4.95399 4.97487 4.99073 5.04417 5.10397 5.13422 5.18681 5.22639 5.27539 5.28100 5.31083 5.39896 5.50498 5.56348 5.59568 5.81030 5.84439 6.22956 6.28718 6.59620 6.60551 7.16985 7.28654 7.87569 8.29750 9.16611 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013616 B = 0.002587 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.934634 B =10819.313747 C =11725.921922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.412 6.412 3 C 0.072 3.928 4 C 0.178 3.822 5 N -0.600 5.600 6 C -0.255 4.255 7 H 0.072 0.928 8 C -0.045 4.045 9 N -0.918 5.918 10 Si 0.949 3.051 11 H -0.277 1.277 12 H -0.295 1.295 13 H -0.294 1.294 14 C 0.154 3.846 15 C 0.116 3.884 16 N -0.708 5.708 17 C 0.514 3.486 18 O -0.591 6.591 19 C -0.067 4.067 20 C -0.137 4.137 21 C -0.094 4.094 22 C -0.077 4.077 23 C -0.133 4.133 24 C -0.127 4.127 25 C -0.133 4.133 26 C -0.116 4.116 27 C -0.066 4.066 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.074 0.926 35 H 0.249 0.751 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.412 0.588 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.064 0.936 50 H 0.072 0.928 51 H 0.060 0.940 52 H 0.068 0.932 53 H 0.077 0.923 54 H 0.091 0.909 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -24.634 0.771 24.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.332 6.332 3 C -0.006 4.006 4 C 0.052 3.948 5 N -0.321 5.321 6 C -0.385 4.385 7 H 0.090 0.910 8 C -0.240 4.240 9 N -0.565 5.565 10 Si 0.779 3.221 11 H -0.202 1.202 12 H -0.223 1.223 13 H -0.221 1.221 14 C 0.027 3.973 15 C -0.011 4.011 16 N -0.360 5.360 17 C 0.302 3.698 18 O -0.472 6.472 19 C -0.071 4.071 20 C -0.194 4.194 21 C -0.132 4.132 22 C -0.113 4.113 23 C -0.133 4.133 24 C -0.183 4.183 25 C -0.133 4.133 26 C -0.173 4.173 27 C -0.103 4.103 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.249 0.751 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.083 0.917 50 H 0.091 0.909 51 H 0.079 0.921 52 H 0.087 0.913 53 H 0.096 0.904 54 H 0.109 0.891 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.245 -24.201 1.046 24.256 hybrid contribution 0.163 1.670 -0.547 1.765 sum 1.407 -22.531 0.499 22.581 Atomic orbital electron populations 1.22747 0.81344 1.02926 0.99408 1.87762 1.20033 1.29980 1.95408 1.23201 0.96042 0.82392 0.98997 1.20784 0.91104 0.97409 0.85477 1.44076 1.76013 1.00655 1.11335 1.19532 1.32990 0.88960 0.96997 0.90980 1.25205 0.99400 0.97971 1.01424 1.70241 1.30046 1.10751 1.45461 0.85491 0.79631 0.79159 0.77866 1.20205 1.22295 1.22148 1.20850 0.93097 0.83698 0.99629 1.21854 1.00496 0.79169 0.99618 1.45888 1.16347 1.07410 1.66329 1.21253 0.81959 0.90805 0.75814 1.90663 1.36249 1.72159 1.48099 1.20814 0.99162 0.88507 0.98582 1.21903 0.96575 1.02506 0.98394 1.21400 0.94375 0.96181 1.01235 1.20394 1.01632 0.93022 0.96278 1.20822 0.99256 0.96847 0.96339 1.21097 1.02276 0.92093 1.02832 1.20622 1.00692 0.94113 0.97844 1.20944 1.00905 1.00590 0.94854 1.20413 1.02731 0.94406 0.92795 0.88240 0.94104 0.95467 0.95839 0.92587 0.95717 0.90778 0.94101 0.91403 0.93068 0.94458 0.94223 0.75115 0.91014 0.89303 0.92718 0.93191 0.92185 0.89486 0.90168 0.90547 0.91674 0.90906 0.92118 0.91343 0.90390 0.89055 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 11.01 113.37 1.25 2.23 16 2 O -0.41 -16.44 9.08 -148.98 -1.35 -17.79 16 3 C 0.07 3.22 5.69 71.98 0.41 3.63 16 4 C 0.18 8.53 5.34 86.38 0.46 8.99 16 5 N -0.60 -29.11 2.52 -701.98 -1.77 -30.88 16 6 C -0.26 -13.62 9.68 84.03 0.81 -12.81 16 7 H 0.07 3.82 7.96 -2.91 -0.02 3.80 16 8 C -0.05 -2.43 4.86 84.86 0.41 -2.02 16 9 N -0.92 -50.40 8.70 21.65 0.19 -50.21 16 10 Si 0.95 44.64 29.63 68.60 2.03 46.67 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 13 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 14 C 0.15 6.12 5.60 86.38 0.48 6.60 16 15 C 0.12 4.41 6.00 86.38 0.52 4.93 16 16 N -0.71 -21.00 5.36 -463.07 -2.48 -23.48 16 17 C 0.51 16.11 6.47 87.66 0.57 16.68 16 18 O -0.59 -24.33 15.90 -3.04 -0.05 -24.37 16 19 C -0.07 -1.49 0.63 -52.79 -0.03 -1.53 16 20 C -0.14 -2.37 7.72 71.98 0.56 -1.81 16 21 C -0.09 -2.12 4.33 30.72 0.13 -1.99 16 22 C -0.08 -1.22 5.17 29.64 0.15 -1.06 16 23 C -0.13 -1.98 5.19 -15.10 -0.08 -2.06 16 24 C -0.13 -1.36 9.61 71.24 0.68 -0.68 16 25 C -0.13 -2.11 5.44 -15.11 -0.08 -2.20 16 26 C -0.12 -1.42 8.35 71.23 0.60 -0.83 16 27 C -0.07 -1.26 4.30 29.66 0.13 -1.14 16 28 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.06 2.90 6.47 -2.39 -0.02 2.88 16 33 H 0.02 1.11 8.11 -2.38 -0.02 1.09 16 34 H 0.07 3.95 5.88 -2.39 -0.01 3.93 16 35 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 36 H 0.07 2.57 6.68 -2.39 -0.02 2.55 16 37 H 0.05 1.97 8.04 -2.39 -0.02 1.95 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.41 9.43 7.60 -92.71 -0.70 8.73 16 41 H 0.07 1.09 7.58 -2.39 -0.02 1.08 16 42 H 0.09 1.26 5.72 -2.39 -0.01 1.25 16 43 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.05 1.29 8.13 -2.39 -0.02 1.28 16 45 H 0.06 1.52 7.90 -2.39 -0.02 1.50 16 46 H 0.09 1.19 6.93 -2.39 -0.02 1.17 16 47 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.08 0.72 5.24 -2.39 -0.01 0.70 16 49 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 50 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 51 H 0.06 0.74 7.93 -2.38 -0.02 0.72 16 52 H 0.07 0.79 7.69 -2.39 -0.02 0.77 16 53 H 0.08 0.76 7.32 -2.39 -0.02 0.75 16 54 H 0.09 1.46 7.88 -2.38 -0.02 1.44 16 55 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 Total: -1.00 -65.87 418.81 3.69 -62.18 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.15 Total: 22.95 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 6.97 Total: 14.94 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -4.06 Total: -104.57 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -1.40 Total: -42.16 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.87 3.69 -62.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508054815.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.696 kcal (2) G-P(sol) polarization free energy of solvation -65.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds