Wall clock time and date at job start Tue Mar 31 2020 21:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00159 * 2 1 4 4 H 1.48499 * 109.46817 * 270.00154 * 3 2 1 5 5 H 1.48499 * 109.47155 * 30.00045 * 3 2 1 6 6 H 1.48500 * 109.47169 * 149.99989 * 3 2 1 7 7 C 1.37873 * 119.99579 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00318 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99862 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47136 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47136 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.47011 * 55.00017 * 12 11 10 14 14 N 1.46895 * 109.47263 * 294.99687 * 12 11 10 15 15 C 1.50702 * 109.46732 * 174.99999 * 12 11 10 16 16 O 1.21283 * 120.00262 * 100.00162 * 15 12 11 17 17 N 1.34777 * 119.99928 * 279.72068 * 15 12 11 18 18 C 1.47605 * 118.64539 * 0.28165 * 17 15 12 19 19 C 1.53945 * 112.14896 * 137.86586 * 18 17 15 20 20 C 1.50886 * 110.08806 * 319.43685 * 19 18 17 21 21 C 1.52568 * 109.35388 * 91.88938 * 20 19 18 22 22 C 1.47093 * 114.32467 * 274.97345 * 21 20 19 23 23 H 1.08997 * 109.33235 * 302.54473 * 22 21 20 24 24 C 1.52997 * 109.32658 * 183.06882 * 22 21 20 25 25 H 1.09001 * 110.80330 * 300.70129 * 24 22 21 26 26 C 1.54819 * 110.90713 * 177.07710 * 24 22 21 27 27 C 1.54103 * 104.18446 * 220.92042 * 26 24 22 28 28 O 1.43744 * 107.29453 * 357.96964 * 27 26 24 29 29 C 1.44413 * 107.00055 * 26.48836 * 28 27 26 30 30 C 1.44580 * 118.64215 * 180.02562 * 17 15 12 31 31 H 0.97001 * 119.99598 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.46911 * 60.00581 * 9 7 2 33 33 H 1.08998 * 109.46810 * 300.00068 * 9 7 2 34 34 H 1.09003 * 109.47474 * 60.00277 * 10 9 7 35 35 H 1.09001 * 109.47648 * 299.99760 * 10 9 7 36 36 H 1.08995 * 109.46737 * 59.99408 * 11 10 9 37 37 H 1.09001 * 109.46469 * 300.00253 * 11 10 9 38 38 H 1.00901 * 111.00088 * 300.00693 * 14 12 11 39 39 H 1.00898 * 111.00134 * 63.95809 * 14 12 11 40 40 H 1.09003 * 108.94389 * 258.55230 * 18 17 15 41 41 H 1.09000 * 108.94514 * 17.17422 * 18 17 15 42 42 H 1.08996 * 109.36801 * 79.62351 * 19 18 17 43 43 H 1.09001 * 109.36820 * 199.37847 * 19 18 17 44 44 H 1.09009 * 109.48940 * 211.84777 * 20 19 18 45 45 H 1.08993 * 109.49838 * 331.91896 * 20 19 18 46 46 H 1.08996 * 108.51383 * 36.23391 * 21 20 19 47 47 H 1.09007 * 108.50933 * 153.72257 * 21 20 19 48 48 H 1.09002 * 110.48440 * 339.59527 * 26 24 22 49 49 H 1.08994 * 110.49037 * 102.24230 * 26 24 22 50 50 H 1.09004 * 109.87365 * 117.39052 * 27 26 24 51 51 H 1.08999 * 109.87200 * 238.54223 * 27 26 24 52 52 H 1.09003 * 110.65112 * 201.48251 * 29 28 27 53 53 H 1.08998 * 110.60533 * 78.47386 * 29 28 27 54 54 H 1.08994 * 109.44754 * 30.76748 * 30 17 15 55 55 H 1.09007 * 109.45017 * 150.68372 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 0.0001 11 6 5.5515 -2.6368 0.0001 12 6 6.0614 -4.0793 0.0009 13 1 5.6267 -4.6187 -0.8406 14 7 5.6727 -4.7353 1.2564 15 6 7.5633 -4.0811 -0.1229 16 8 8.2529 -4.2336 0.8631 17 7 8.1401 -3.9190 -1.3301 18 6 7.2725 -3.7357 -2.5101 19 6 7.8029 -2.6436 -3.4565 20 6 8.3274 -1.4758 -2.6580 21 6 9.8187 -1.6688 -2.3998 22 6 10.1279 -2.4948 -1.2227 23 1 9.6688 -2.0507 -0.3396 24 6 11.6443 -2.5500 -1.0271 25 1 12.1328 -2.9724 -1.9052 26 6 12.0082 -3.3514 0.2466 27 6 13.1552 -2.5445 0.8856 28 8 13.4310 -1.4327 0.0171 29 6 12.2115 -1.1450 -0.7008 30 6 9.5834 -3.9262 -1.4151 31 1 -0.4849 0.8401 -0.0004 32 1 3.8752 -0.6798 0.8895 33 1 3.8745 -0.6809 -0.8905 34 1 3.6577 -3.1507 -0.8897 35 1 3.6584 -3.1503 0.8903 36 1 5.9147 -2.1228 0.8900 37 1 5.9148 -2.1230 -0.8899 38 1 6.0635 -4.2535 2.0522 39 1 4.6690 -4.8044 1.3327 40 1 7.2126 -4.6778 -3.0551 41 1 6.2730 -3.4587 -2.1748 42 1 8.6069 -3.0540 -4.0674 43 1 6.9949 -2.3026 -4.1039 44 1 8.1716 -0.5533 -3.2175 45 1 7.7981 -1.4184 -1.7069 46 1 10.2642 -2.1366 -3.2777 47 1 10.2762 -0.6886 -2.2647 48 1 11.1545 -3.4018 0.9225 49 1 12.3472 -4.3532 -0.0168 50 1 12.8507 -2.1813 1.8672 51 1 14.0421 -3.1712 0.9786 52 1 12.4255 -0.5951 -1.6173 53 1 11.5179 -0.5879 -0.0709 54 1 9.9896 -4.5720 -0.6367 55 1 9.8876 -4.3010 -2.3925 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001514597424.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:35 Heat of formation + Delta-G solvation = -126.881674 kcal Electronic energy + Delta-G solvation = -31548.286750 eV Core-core repulsion = 27582.967062 eV Total energy + Delta-G solvation = -3965.319688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.83619 -40.49501 -38.67041 -37.49239 -35.66593 -35.18167 -34.31180 -33.26498 -31.73275 -30.09923 -29.65004 -28.42019 -26.68486 -25.88300 -24.21676 -23.34897 -22.70742 -21.85449 -21.41130 -21.17424 -19.61578 -18.90149 -18.64701 -17.66026 -17.35120 -17.04843 -16.44838 -16.34183 -16.16793 -16.01966 -15.86448 -15.30576 -15.24811 -14.89178 -14.81265 -14.60696 -14.45554 -14.40265 -14.08068 -13.88370 -13.62942 -13.50271 -13.14913 -13.10833 -13.01770 -12.69294 -12.41538 -12.36876 -12.27574 -12.08571 -11.91684 -11.84090 -11.73372 -11.66378 -11.52351 -11.42215 -11.34675 -11.28599 -11.20414 -10.77228 -10.71985 -10.62886 -9.70369 -9.56316 -8.30240 -6.33889 1.33170 1.36132 1.46898 1.58908 2.00270 2.34272 2.94279 3.05418 3.39072 3.50676 3.59398 3.65393 3.77605 3.91856 3.95239 3.99666 4.03106 4.08527 4.14000 4.21750 4.29569 4.34102 4.36336 4.38838 4.45996 4.58272 4.63259 4.68991 4.70269 4.76544 4.79401 4.82303 4.85382 4.88763 4.93427 4.99851 5.04594 5.08969 5.09729 5.13440 5.18517 5.27211 5.35614 5.39848 5.46297 5.50708 5.56879 5.65932 5.73500 5.86861 6.03648 6.27591 6.35517 6.46129 6.74759 7.20168 7.31054 8.86420 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.002852 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.014018 B = 9817.002325 C =10395.318191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.530 4.530 8 H 0.035 0.965 9 C -0.010 4.010 10 C -0.091 4.091 11 C -0.137 4.137 12 C 0.079 3.921 13 H 0.116 0.884 14 N -0.834 5.834 15 C 0.517 3.483 16 O -0.567 6.567 17 N -0.597 5.597 18 C 0.091 3.909 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.079 4.079 23 H 0.044 0.956 24 C -0.103 4.103 25 H 0.104 0.896 26 C -0.150 4.150 27 C 0.043 3.957 28 O -0.401 6.401 29 C 0.049 3.951 30 C 0.121 3.879 31 H 0.265 0.735 32 H 0.010 0.990 33 H 0.020 0.980 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.345 0.655 39 H 0.355 0.645 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.081 0.919 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.089 0.911 50 H 0.052 0.948 51 H 0.096 0.904 52 H 0.108 0.892 53 H 0.050 0.950 54 H 0.069 0.931 55 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.339 -7.013 -8.688 28.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.568 4.568 8 H 0.053 0.947 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.176 4.176 12 C -0.036 4.036 13 H 0.133 0.867 14 N -0.366 5.366 15 C 0.305 3.695 16 O -0.446 6.446 17 N -0.328 5.328 18 C -0.030 4.030 19 C -0.163 4.163 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.099 4.099 23 H 0.063 0.937 24 C -0.122 4.122 25 H 0.122 0.878 26 C -0.188 4.188 27 C -0.034 4.034 28 O -0.321 6.321 29 C -0.027 4.027 30 C -0.002 4.002 31 H 0.074 0.926 32 H 0.028 0.972 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.107 0.893 50 H 0.070 0.930 51 H 0.114 0.886 52 H 0.126 0.874 53 H 0.068 0.932 54 H 0.087 0.913 55 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 27.161 -7.541 -8.498 29.442 hybrid contribution -1.206 1.699 0.775 2.223 sum 25.955 -5.843 -7.723 27.703 Atomic orbital electron populations 1.70070 1.08246 1.28066 1.52796 1.25999 0.95562 1.03418 0.94314 0.85697 0.79304 0.78574 0.79301 1.18767 1.21273 1.17554 1.21513 0.92158 0.93084 1.50015 0.94660 1.19507 0.93797 0.95272 0.96208 1.21317 0.92965 0.97243 1.01396 1.22313 0.96510 0.96034 1.02780 1.21448 0.91534 0.94613 0.95987 0.86660 1.58702 1.17039 1.57474 1.03380 1.20812 0.90573 0.75054 0.83050 1.90627 1.65506 1.50445 1.38024 1.47694 1.06932 1.71008 1.07213 1.22373 0.93859 1.00549 0.86232 1.21757 1.02531 0.94598 0.97442 1.21095 0.95892 0.98924 0.99972 1.20534 0.96275 1.00096 0.98156 1.20534 0.93961 0.96624 0.98800 0.93738 1.22674 0.95020 0.95607 0.98926 0.87777 1.22991 0.98247 1.00399 0.97149 1.23261 0.99110 0.87732 0.93271 1.88836 1.34025 1.51389 1.57838 1.23727 0.85688 0.96650 0.96628 1.21431 0.79172 0.96274 1.03316 0.92570 0.97159 0.96158 0.91921 0.93053 0.92964 0.90184 0.84200 0.82980 0.89617 0.89794 0.89612 0.89443 0.91113 0.93821 0.90047 0.92049 0.91807 0.89258 0.93011 0.88557 0.87427 0.93156 0.91297 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.95 43.63 27.47 68.60 1.88 45.51 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 7 C -0.53 -29.64 9.66 25.60 0.25 -29.39 16 8 H 0.04 2.16 7.99 -2.91 -0.02 2.14 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.09 -3.15 4.92 30.60 0.15 -3.00 16 11 C -0.14 -3.78 4.44 30.60 0.14 -3.65 16 12 C 0.08 1.97 2.34 44.17 0.10 2.07 16 13 H 0.12 2.51 6.89 -2.39 -0.02 2.49 16 14 N -0.83 -22.11 8.94 -171.82 -1.54 -23.65 16 15 C 0.52 13.41 6.87 87.66 0.60 14.01 16 16 O -0.57 -18.53 15.68 -3.04 -0.05 -18.57 16 17 N -0.60 -11.35 2.25 -819.22 -1.84 -13.19 16 18 C 0.09 1.32 5.48 86.49 0.47 1.79 16 19 C -0.13 -1.44 5.71 30.23 0.17 -1.27 16 20 C -0.12 -1.79 5.51 29.76 0.16 -1.63 16 21 C -0.11 -1.44 4.33 28.61 0.12 -1.32 16 22 C -0.08 -1.26 1.49 -12.18 -0.02 -1.28 16 23 H 0.04 1.01 8.13 -2.39 -0.02 0.99 16 24 C -0.10 -1.46 2.63 -9.49 -0.03 -1.49 16 25 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 26 C -0.15 -2.44 5.45 31.59 0.17 -2.27 16 27 C 0.04 0.73 7.70 72.36 0.56 1.29 16 28 O -0.40 -8.29 11.52 -148.98 -1.72 -10.01 16 29 C 0.05 0.81 6.14 72.66 0.45 1.25 16 30 C 0.12 1.99 4.61 87.19 0.40 2.40 16 31 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 32 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 33 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 1.79 6.87 -2.39 -0.02 1.78 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 37 H 0.08 2.04 5.82 -2.39 -0.01 2.03 16 38 H 0.34 9.63 8.58 -89.69 -0.77 8.87 16 39 H 0.35 8.88 7.55 -89.70 -0.68 8.21 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.37 4.41 -2.39 -0.01 1.36 16 42 H 0.09 0.70 7.32 -2.39 -0.02 0.68 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.04 0.87 6.62 -2.39 -0.02 0.86 16 46 H 0.08 0.74 7.36 -2.39 -0.02 0.72 16 47 H 0.06 0.77 6.94 -2.38 -0.02 0.76 16 48 H 0.06 1.34 7.71 -2.39 -0.02 1.32 16 49 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 51 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 52 H 0.11 1.38 7.92 -2.39 -0.02 1.36 16 53 H 0.05 0.92 8.04 -2.39 -0.02 0.90 16 54 H 0.07 1.40 6.07 -2.39 -0.01 1.38 16 55 H 0.10 1.12 8.06 -2.38 -0.02 1.11 16 Total: -1.00 -70.98 405.97 0.71 -70.27 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.62 Total: 30.45 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 4.29 Total: -22.13 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -3.08 Total: -95.52 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.76 Total: -28.58 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.51 kcal Total: -70.98 0.71 -70.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514597424.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.611 kcal (2) G-P(sol) polarization free energy of solvation -70.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds