Wall clock time and date at job start Tue Mar 31 2020 20:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46867 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46982 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46822 * 180.02562 * 12 11 10 14 14 O 1.21275 * 120.00417 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99529 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99616 * 179.97438 * 15 13 12 17 17 H 1.08996 * 110.01428 * 34.94158 * 16 15 13 18 18 C 1.53871 * 110.03524 * 273.54657 * 16 15 13 19 19 C 1.54269 * 106.60146 * 240.71849 * 18 16 15 20 20 C 1.54893 * 104.19252 * 23.60748 * 19 18 16 21 21 C 1.54269 * 110.02889 * 156.38113 * 16 15 13 22 22 H 1.09002 * 110.48568 * 214.35762 * 21 16 15 23 23 N 1.46904 * 110.48572 * 337.00002 * 21 16 15 24 24 C 1.46844 * 110.99703 * 304.20740 * 23 21 16 25 25 C 1.53045 * 109.52312 * 174.16416 * 24 23 21 26 26 C 1.53121 * 109.27483 * 59.17906 * 25 24 23 27 27 O 1.42908 * 109.51824 * 182.44419 * 26 25 24 28 28 C 1.53113 * 109.16265 * 302.34395 * 26 25 24 29 29 C 1.46850 * 110.99703 * 180.02562 * 23 21 16 30 30 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 32 32 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 33 33 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 34 34 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 35 35 H 1.08996 * 109.47435 * 299.99755 * 11 10 9 36 36 H 1.09004 * 109.47044 * 60.00137 * 11 10 9 37 37 H 1.08996 * 109.47142 * 300.00311 * 12 11 10 38 38 H 1.09004 * 109.46812 * 60.00370 * 12 11 10 39 39 H 0.96998 * 120.00230 * 0.02562 * 15 13 12 40 40 H 1.08997 * 110.03197 * 0.02562 * 18 16 15 41 41 H 1.08994 * 110.03384 * 121.43218 * 18 16 15 42 42 H 1.08999 * 110.48702 * 142.28876 * 19 18 16 43 43 H 1.08999 * 110.48413 * 264.79993 * 19 18 16 44 44 H 1.09000 * 110.75202 * 80.38086 * 20 19 18 45 45 H 1.09008 * 110.75181 * 203.55734 * 20 19 18 46 46 H 1.08998 * 109.46509 * 294.17753 * 24 23 21 47 47 H 1.08993 * 109.46510 * 54.14815 * 24 23 21 48 48 H 1.09001 * 109.49804 * 299.24308 * 25 24 23 49 49 H 1.08990 * 109.50549 * 179.12356 * 25 24 23 50 50 H 1.08995 * 109.52593 * 62.25412 * 26 25 24 51 51 H 0.96698 * 113.99671 * 299.68424 * 27 26 25 52 52 H 1.08997 * 109.50906 * 297.72045 * 28 26 25 53 53 H 1.09004 * 109.50605 * 177.59839 * 28 26 25 54 54 H 1.08996 * 109.46299 * 305.85344 * 29 23 21 55 55 H 1.08994 * 109.46461 * 65.82253 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0018 13 6 1.7212 -7.4551 -0.0031 14 8 0.5085 -7.4551 -0.0039 15 7 2.3952 -8.6223 -0.0033 16 6 1.6626 -9.8910 -0.0040 17 1 0.7492 -9.7941 -0.5908 18 6 1.3212 -10.3033 1.4386 19 6 2.0116 -11.6609 1.6841 20 6 3.1748 -11.6858 0.6615 21 6 2.5487 -11.0124 -0.5848 22 1 1.9429 -11.7277 -1.1412 23 7 3.5969 -10.4462 -1.4443 24 6 3.0149 -9.6159 -2.5065 25 6 4.1355 -8.9283 -3.2900 26 6 5.0560 -9.9921 -3.8945 27 8 6.1364 -9.3551 -4.5797 28 6 5.6107 -10.8734 -2.7720 29 6 4.4471 -11.5047 -2.0040 30 1 -0.4849 -0.8401 0.0004 31 1 0.6248 -2.5571 0.8897 32 1 0.6241 -2.5567 -0.8903 33 1 2.8720 -3.6043 -0.8905 34 1 2.8720 -3.6044 0.8894 35 1 0.8535 -5.0452 0.8885 36 1 0.8541 -5.0446 -0.8914 37 1 3.1014 -6.0918 -0.8917 38 1 3.1014 -6.0927 0.8882 39 1 3.3651 -8.6222 -0.0023 40 1 1.7001 -9.5593 2.1392 41 1 0.2422 -10.4074 1.5517 42 1 2.3974 -11.7141 2.7022 43 1 1.3184 -12.4808 1.4965 44 1 4.0234 -11.1080 1.0277 45 1 3.4735 -12.7108 0.4413 46 1 2.4330 -10.2442 -3.1809 47 1 2.3658 -8.8611 -2.0629 48 1 4.7094 -8.2892 -2.6190 49 1 3.7039 -8.3244 -4.0881 50 1 4.4912 -10.6071 -4.5951 51 1 5.8573 -8.7799 -5.3052 52 1 6.2078 -10.2649 -2.0929 53 1 6.2332 -11.6592 -3.2001 54 1 4.8384 -12.1219 -1.1953 55 1 3.8582 -12.1237 -2.6808 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528697008.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:12 Heat of formation + Delta-G solvation = -139.165934 kcal Electronic energy + Delta-G solvation = -30595.803973 eV Core-core repulsion = 26629.951599 eV Total energy + Delta-G solvation = -3965.852373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -41.60056 -40.15162 -38.75769 -36.91780 -36.61771 -34.79770 -34.64697 -32.56459 -31.88696 -31.33428 -28.89800 -28.10521 -26.82055 -24.49954 -24.28782 -24.03780 -22.15058 -21.42420 -21.30079 -21.06557 -20.47824 -18.86875 -18.32194 -18.08386 -17.72747 -17.03780 -16.47677 -16.21311 -15.86323 -15.69223 -15.61099 -15.52864 -15.40156 -15.11320 -14.89919 -14.55465 -14.53880 -14.02940 -13.94096 -13.79067 -13.41406 -13.21224 -12.91806 -12.77546 -12.71794 -12.61531 -12.35691 -12.27702 -12.20704 -12.18472 -12.05754 -11.93149 -11.79247 -11.73125 -11.64306 -11.52537 -11.49722 -11.26101 -10.88658 -10.79615 -10.59384 -10.55011 -9.93728 -9.38630 -8.69971 -6.40355 1.52114 1.62477 1.65603 1.79984 2.18309 2.57715 2.81175 3.15645 3.27994 3.37296 3.64621 3.77877 3.84145 3.86286 3.98224 4.05073 4.06204 4.14052 4.21482 4.31544 4.33985 4.39887 4.47702 4.50759 4.53931 4.56767 4.60654 4.63180 4.71362 4.72624 4.76660 4.82755 4.86965 4.91973 5.00071 5.02420 5.04638 5.07791 5.12143 5.17842 5.19822 5.20725 5.22187 5.31981 5.41073 5.48856 5.56117 5.57894 6.00236 6.03212 6.09532 6.18766 6.56231 6.63650 6.83585 7.32259 7.43736 8.70543 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.002331 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.943656 B =12009.433542 C =13854.118940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.046 4.046 3 Si 1.124 2.876 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.617 4.617 8 H 0.056 0.944 9 C 0.004 3.996 10 C -0.089 4.089 11 C -0.093 4.093 12 C -0.128 4.128 13 C 0.511 3.489 14 O -0.589 6.589 15 N -0.696 5.696 16 C 0.145 3.855 17 H 0.061 0.939 18 C -0.133 4.133 19 C -0.115 4.115 20 C -0.106 4.106 21 C 0.078 3.922 22 H 0.063 0.937 23 N -0.529 5.529 24 C 0.050 3.950 25 C -0.143 4.143 26 C 0.104 3.896 27 O -0.585 6.585 28 C -0.107 4.107 29 C 0.063 3.937 30 H 0.253 0.747 31 H -0.019 1.019 32 H -0.018 1.018 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.419 0.581 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.029 0.971 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.054 0.946 51 H 0.392 0.608 52 H 0.070 0.930 53 H 0.078 0.922 54 H 0.099 0.901 55 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.159 -32.415 -3.878 35.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.944 3.056 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.655 4.655 8 H 0.075 0.925 9 C -0.033 4.033 10 C -0.127 4.127 11 C -0.131 4.131 12 C -0.168 4.168 13 C 0.299 3.701 14 O -0.470 6.470 15 N -0.349 5.349 16 C 0.040 3.960 17 H 0.079 0.921 18 C -0.172 4.172 19 C -0.153 4.153 20 C -0.143 4.143 21 C -0.031 4.031 22 H 0.081 0.919 23 N -0.254 5.254 24 C -0.078 4.078 25 C -0.181 4.181 26 C 0.045 3.955 27 O -0.393 6.393 28 C -0.145 4.145 29 C -0.064 4.064 30 H 0.062 0.938 31 H -0.001 1.001 32 H 0.000 1.000 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.258 0.742 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.047 0.953 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.072 0.928 51 H 0.241 0.759 52 H 0.089 0.911 53 H 0.096 0.904 54 H 0.117 0.883 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.776 -30.851 -3.171 33.542 hybrid contribution -1.198 -1.525 -0.985 2.175 sum 11.578 -32.376 -4.156 34.634 Atomic orbital electron populations 1.70887 1.08154 1.29739 1.49144 1.27611 0.96612 1.07294 0.92709 0.82875 0.74223 0.70608 0.77898 1.19650 1.20902 1.18907 1.22574 0.94906 0.93318 1.54726 0.92539 1.19226 0.95338 0.95205 0.93576 1.21337 0.97569 0.92533 1.01252 1.21223 0.97450 0.93499 1.00964 1.21634 0.98863 0.89995 1.06300 1.21040 0.87694 0.86662 0.74712 1.90688 1.16303 1.88350 1.51654 1.45969 1.11311 1.03978 1.73650 1.21564 0.94507 0.83242 0.96706 0.92086 1.22535 1.00677 0.98592 0.95437 1.22287 0.97296 0.95742 1.00025 1.22532 0.97961 1.01064 0.92781 1.22745 0.91825 0.93904 0.94581 0.91919 1.61932 1.20604 1.22400 1.20437 1.22165 0.96221 0.97009 0.92430 1.22260 0.97134 0.98681 1.00074 1.21885 0.87233 0.92995 0.93380 1.86476 1.35155 1.66028 1.51648 1.21518 0.97866 0.98979 0.96097 1.22077 0.93565 0.92374 0.98432 0.93785 1.00052 0.99975 0.92207 0.92245 0.93884 0.93805 0.86850 0.86854 0.74175 0.92148 0.92300 0.90429 0.90579 0.90166 0.89543 0.95260 0.90730 0.90827 0.91079 0.92823 0.75857 0.91090 0.90380 0.88272 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.40 13.65 21.45 0.29 -61.11 16 2 C -0.05 -2.77 5.46 84.65 0.46 -2.31 16 3 Si 1.12 51.59 29.90 68.60 2.05 53.64 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.62 -36.72 9.11 25.60 0.23 -36.49 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.00 0.20 4.28 29.85 0.13 0.33 16 10 C -0.09 -3.76 5.15 30.59 0.16 -3.60 16 11 C -0.09 -3.43 4.50 30.59 0.14 -3.29 16 12 C -0.13 -3.30 5.70 29.85 0.17 -3.13 16 13 C 0.51 13.86 7.34 87.66 0.64 14.50 16 14 O -0.59 -21.76 15.66 -3.01 -0.05 -21.80 16 15 N -0.70 -13.24 2.87 -439.10 -1.26 -14.50 16 16 C 0.15 2.58 2.27 45.71 0.10 2.68 16 17 H 0.06 1.41 7.61 -2.39 -0.02 1.39 16 18 C -0.13 -2.23 6.59 31.32 0.21 -2.03 16 19 C -0.12 -1.18 6.83 31.67 0.22 -0.96 16 20 C -0.11 -0.89 5.47 31.88 0.17 -0.72 16 21 C 0.08 0.92 2.49 45.99 0.11 1.03 16 22 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 23 N -0.53 -6.14 3.44 -864.82 -2.97 -9.11 16 24 C 0.05 0.74 4.87 86.33 0.42 1.16 16 25 C -0.14 -1.99 5.72 30.65 0.18 -1.81 16 26 C 0.10 1.34 3.54 30.67 0.11 1.45 16 27 O -0.58 -8.81 13.32 -148.98 -1.99 -10.80 16 28 C -0.11 -1.22 5.75 30.65 0.18 -1.05 16 29 C 0.06 0.58 5.33 86.33 0.46 1.04 16 30 H 0.25 16.87 7.22 -92.71 -0.67 16.20 16 31 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 32 H -0.02 -1.08 8.01 -2.39 -0.02 -1.10 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 36 H 0.04 1.75 8.10 -2.38 -0.02 1.73 16 37 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.42 6.45 7.67 -92.71 -0.71 5.74 16 40 H 0.06 1.17 7.92 -2.39 -0.02 1.15 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.09 0.46 7.82 -2.38 -0.02 0.44 16 46 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.07 1.41 5.11 -2.39 -0.01 1.40 16 48 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.39 3.19 9.09 -74.06 -0.67 2.52 16 52 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 54 H 0.10 0.65 6.92 -2.39 -0.02 0.63 16 55 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -77.63 420.14 -0.26 -77.89 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -0.43 Total: 19.00 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 4.09 Total: -33.20 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -3.94 Total: -84.72 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -2.03 Total: -32.60 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.05 Total: 53.64 kcal Total: -77.63 -0.26 -77.89 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528697008.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.278 kcal (2) G-P(sol) polarization free energy of solvation -77.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds