Wall clock time and date at job start Tue Mar 31 2020 20:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47188 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00025 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00035 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00217 * 179.97438 * 15 13 12 17 17 H 1.09003 * 110.01707 * 325.06030 * 16 15 13 18 18 C 1.53883 * 110.03325 * 86.45056 * 16 15 13 19 19 C 1.54262 * 106.59903 * 119.28734 * 18 16 15 20 20 C 1.54894 * 104.19749 * 23.60874 * 19 18 16 21 21 C 1.54263 * 110.03482 * 203.61808 * 16 15 13 22 22 H 1.08996 * 110.48717 * 335.78547 * 21 16 15 23 23 N 1.46905 * 110.48762 * 98.42855 * 21 16 15 24 24 C 1.46850 * 110.99446 * 304.21008 * 23 21 16 25 25 C 1.53041 * 109.52070 * 174.16436 * 24 23 21 26 26 C 1.53115 * 109.27984 * 59.17671 * 25 24 23 27 27 O 1.42906 * 109.57136 * 182.41311 * 26 25 24 28 28 C 1.53117 * 109.16129 * 302.34697 * 26 25 24 29 29 C 1.46842 * 111.00192 * 180.02562 * 23 21 16 30 30 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 32 32 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 33 33 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 34 34 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 35 35 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 36 36 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 37 37 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 38 38 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 39 39 H 0.96998 * 119.99962 * 359.97438 * 15 13 12 40 40 H 1.09000 * 110.02661 * 238.57382 * 18 16 15 41 41 H 1.09001 * 110.03026 * 359.95071 * 18 16 15 42 42 H 1.08995 * 110.48800 * 142.29060 * 19 18 16 43 43 H 1.08996 * 110.48383 * 264.93647 * 19 18 16 44 44 H 1.09000 * 110.75313 * 80.37244 * 20 19 18 45 45 H 1.08992 * 110.75780 * 203.56268 * 20 19 18 46 46 H 1.09005 * 109.46387 * 294.17397 * 24 23 21 47 47 H 1.08998 * 109.46463 * 54.14449 * 24 23 21 48 48 H 1.09006 * 109.50014 * 299.23721 * 25 24 23 49 49 H 1.09000 * 109.53528 * 179.14177 * 25 24 23 50 50 H 1.08993 * 109.52205 * 62.25373 * 26 25 24 51 51 H 0.96699 * 113.99946 * 299.70902 * 27 26 25 52 52 H 1.08999 * 109.50420 * 297.71523 * 28 26 25 53 53 H 1.09002 * 109.53721 * 177.61552 * 28 26 25 54 54 H 1.09002 * 109.46081 * 305.85630 * 29 23 21 55 55 H 1.09005 * 109.46571 * 65.81743 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 6 1.7213 -7.4551 0.0018 14 8 0.5085 -7.4551 0.0018 15 7 2.3952 -8.6222 0.0029 16 6 1.6628 -9.8910 0.0034 17 1 0.7489 -9.7940 0.5896 18 6 1.3223 -10.3038 -1.4394 19 6 2.0129 -11.6613 -1.6840 20 6 2.1931 -12.2569 -0.2655 21 6 2.5484 -11.0122 0.5852 22 1 3.6033 -10.7619 0.4731 23 7 2.2212 -11.2449 1.9983 24 6 2.3414 -10.0057 2.7771 25 6 1.8551 -10.2514 4.2073 26 6 2.6973 -11.3603 4.8441 27 8 2.2122 -11.6338 6.1602 28 6 2.5934 -12.6251 3.9874 29 6 3.0586 -12.3103 2.5639 30 1 -0.4850 -0.8401 -0.0004 31 1 0.6242 -2.5567 0.8904 32 1 0.6248 -2.5571 -0.8896 33 1 2.8720 -3.6043 -0.8895 34 1 2.8721 -3.6042 0.8905 35 1 0.8542 -5.0446 0.8914 36 1 0.8534 -5.0451 -0.8886 37 1 3.1014 -6.0927 -0.8882 38 1 3.1014 -6.0917 0.8918 39 1 3.3652 -8.6222 0.0032 40 1 0.2432 -10.4078 -1.5531 41 1 1.7012 -9.5596 -2.1399 42 1 1.3794 -12.3076 -2.2914 43 1 2.9813 -11.5159 -2.1625 44 1 1.2658 -12.7113 0.0833 45 1 3.0063 -12.9825 -0.2517 46 1 3.3842 -9.6892 2.7975 47 1 1.7345 -9.2266 2.3159 48 1 0.8082 -10.5547 4.1886 49 1 1.9584 -9.3359 4.7897 50 1 3.7381 -11.0416 4.8984 51 1 2.2487 -10.8749 6.7584 52 1 1.5582 -12.9657 3.9653 53 1 3.2243 -13.4059 4.4121 54 1 2.9728 -13.2053 1.9477 55 1 4.0980 -11.9826 2.5852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528697009.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:25 Heat of formation + Delta-G solvation = -149.093103 kcal Electronic energy + Delta-G solvation = -30081.416355 eV Core-core repulsion = 26115.133507 eV Total energy + Delta-G solvation = -3966.282848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.48527 -40.26906 -38.78219 -36.95079 -36.67697 -34.84300 -34.71906 -32.59681 -32.00163 -31.36569 -28.85999 -28.12016 -26.79185 -24.56316 -24.27987 -24.02620 -22.24329 -21.78879 -21.10443 -20.90306 -20.69565 -18.87466 -18.37735 -18.08910 -17.73519 -17.17190 -16.90920 -15.95781 -15.74470 -15.68625 -15.54068 -15.51922 -15.45728 -15.08038 -14.98152 -14.61958 -14.43169 -14.05727 -13.95040 -13.87928 -13.35573 -13.20269 -13.06535 -12.86319 -12.74347 -12.64025 -12.41091 -12.36265 -12.26058 -12.21018 -11.99251 -11.95791 -11.92629 -11.77208 -11.65030 -11.50839 -11.49170 -11.27030 -10.92589 -10.81804 -10.60618 -10.55383 -10.09749 -9.34633 -8.70284 -6.40972 1.51885 1.61540 1.61611 1.80598 2.12658 2.57703 2.77699 3.15070 3.24702 3.35679 3.67411 3.74821 3.78334 3.83366 3.94596 3.98603 4.03891 4.09645 4.19153 4.29379 4.31395 4.40414 4.45881 4.49371 4.52431 4.55213 4.57274 4.58606 4.67706 4.71318 4.74671 4.79138 4.82136 4.87377 4.96439 5.02966 5.04289 5.05470 5.11258 5.11720 5.17301 5.19050 5.20739 5.28244 5.40199 5.47408 5.54334 5.54957 5.99183 6.03983 6.12025 6.17807 6.51533 6.55425 6.80640 7.25437 7.43281 8.69982 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.002036 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.972035 B =13746.366486 C =15337.453172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.047 4.047 3 Si 1.122 2.878 4 H -0.286 1.286 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.618 4.618 8 H 0.057 0.943 9 C 0.002 3.998 10 C -0.089 4.089 11 C -0.095 4.095 12 C -0.128 4.128 13 C 0.513 3.487 14 O -0.585 6.585 15 N -0.713 5.713 16 C 0.146 3.854 17 H 0.066 0.934 18 C -0.133 4.133 19 C -0.114 4.114 20 C -0.107 4.107 21 C 0.082 3.918 22 H 0.071 0.929 23 N -0.542 5.542 24 C 0.060 3.940 25 C -0.146 4.146 26 C 0.106 3.894 27 O -0.586 6.586 28 C -0.109 4.109 29 C 0.063 3.937 30 H 0.252 0.748 31 H -0.019 1.019 32 H -0.019 1.019 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.414 0.586 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.074 0.926 50 H 0.062 0.938 51 H 0.393 0.607 52 H 0.062 0.938 53 H 0.082 0.918 54 H 0.097 0.903 55 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.714 -32.319 3.874 35.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.243 4.243 3 Si 0.942 3.058 4 H -0.211 1.211 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.655 4.655 8 H 0.076 0.924 9 C -0.035 4.035 10 C -0.126 4.126 11 C -0.133 4.133 12 C -0.168 4.168 13 C 0.301 3.699 14 O -0.465 6.465 15 N -0.366 5.366 16 C 0.041 3.959 17 H 0.084 0.916 18 C -0.173 4.173 19 C -0.152 4.152 20 C -0.145 4.145 21 C -0.026 4.026 22 H 0.088 0.912 23 N -0.267 5.267 24 C -0.068 4.068 25 C -0.185 4.185 26 C 0.047 3.953 27 O -0.394 6.394 28 C -0.147 4.147 29 C -0.065 4.065 30 H 0.061 0.939 31 H -0.001 1.001 32 H -0.001 1.001 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.251 0.749 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.109 0.891 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.093 0.907 50 H 0.080 0.920 51 H 0.242 0.758 52 H 0.081 0.919 53 H 0.101 0.899 54 H 0.115 0.885 55 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.095 -31.452 3.656 33.895 hybrid contribution 0.434 -0.446 0.254 0.672 sum 12.529 -31.898 3.910 34.492 Atomic orbital electron populations 1.70917 1.08171 1.29693 1.49051 1.27632 0.96619 1.07355 0.92737 0.82899 0.74060 0.70596 0.78250 1.21109 1.19056 1.19035 1.22543 0.94923 0.93270 1.54794 0.92428 1.19237 0.95389 0.95303 0.93551 1.21336 0.97545 0.92427 1.01333 1.21235 0.97528 0.93627 1.00936 1.21660 0.98860 0.89673 1.06594 1.21100 0.87757 0.86632 0.74379 1.90709 1.16457 1.88306 1.51023 1.46106 1.10724 1.04676 1.75075 1.21577 0.95464 0.82367 0.96506 0.91559 1.22498 1.00689 0.98644 0.95422 1.22293 1.01192 0.94607 0.97067 1.22492 1.02835 0.95733 0.93448 1.22713 0.97320 0.95180 0.87420 0.91174 1.62010 1.55700 1.07491 1.01534 1.21970 0.99630 0.91907 0.93302 1.22281 1.00786 0.99488 0.95902 1.21879 0.96016 0.95118 0.82303 1.86472 1.87819 1.42241 1.22870 1.21541 1.02685 0.96705 0.93782 1.22080 0.94423 0.95322 0.94648 0.93852 1.00064 1.00084 0.92110 0.92100 0.93930 0.93932 0.86441 0.86481 0.74874 0.92706 0.91931 0.90535 0.90094 0.90903 0.89065 0.93708 0.92110 0.92284 0.90701 0.91961 0.75773 0.91933 0.89947 0.88476 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.18 13.65 21.45 0.29 -60.89 16 2 C -0.05 -2.82 5.46 84.65 0.46 -2.36 16 3 Si 1.12 51.07 29.90 68.60 2.05 53.12 16 4 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.62 -36.39 9.11 25.60 0.23 -36.15 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.00 0.12 4.28 29.85 0.13 0.25 16 10 C -0.09 -3.66 5.15 30.60 0.16 -3.50 16 11 C -0.10 -3.42 4.50 30.59 0.14 -3.28 16 12 C -0.13 -3.08 5.70 29.85 0.17 -2.91 16 13 C 0.51 13.41 7.82 87.66 0.69 14.10 16 14 O -0.59 -21.64 15.66 -3.04 -0.05 -21.68 16 15 N -0.71 -12.37 4.22 -439.09 -1.85 -14.22 16 16 C 0.15 2.63 1.86 45.72 0.09 2.71 16 17 H 0.07 1.71 6.89 -2.39 -0.02 1.70 16 18 C -0.13 -2.28 6.59 31.32 0.21 -2.08 16 19 C -0.11 -1.18 6.83 31.67 0.22 -0.96 16 20 C -0.11 -1.01 5.47 31.89 0.17 -0.84 16 21 C 0.08 0.98 2.28 45.99 0.10 1.09 16 22 H 0.07 0.63 7.73 -2.39 -0.02 0.61 16 23 N -0.54 -7.56 4.49 -864.81 -3.88 -11.44 16 24 C 0.06 0.95 5.05 86.33 0.44 1.38 16 25 C -0.15 -2.32 5.72 30.65 0.18 -2.15 16 26 C 0.11 1.45 3.54 30.67 0.11 1.56 16 27 O -0.59 -9.13 13.33 -148.98 -1.99 -11.12 16 28 C -0.11 -1.40 5.75 30.65 0.18 -1.23 16 29 C 0.06 0.64 5.33 86.33 0.46 1.10 16 30 H 0.25 16.80 7.22 -92.71 -0.67 16.13 16 31 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 32 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 36 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 37 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.41 4.35 8.34 -92.71 -0.77 3.58 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.17 7.92 -2.39 -0.02 1.15 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.09 0.51 7.82 -2.39 -0.02 0.49 16 46 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 47 H 0.06 1.28 6.02 -2.39 -0.01 1.26 16 48 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 49 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.39 3.20 9.09 -74.06 -0.67 2.53 16 52 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 53 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 54 H 0.10 0.75 6.93 -2.39 -0.02 0.73 16 55 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 Total: -1.00 -80.22 423.06 -1.80 -82.01 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.49 Total: 17.48 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 4.12 Total: -33.27 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -5.44 Total: -86.55 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -2.03 Total: -32.80 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -80.22 -1.80 -82.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528697009.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.079 kcal (2) G-P(sol) polarization free energy of solvation -80.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds