Wall clock time and date at job start Tue Mar 31 2020 22:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00102 * 2 1 4 4 C 1.52999 * 109.47024 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47310 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47310 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46792 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00333 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99703 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99818 * 179.97438 * 9 7 6 11 11 H 1.08998 * 113.22246 * 22.19366 * 10 9 7 12 12 C 1.49998 * 114.12824 * 249.13835 * 10 9 7 13 13 H 1.09003 * 112.50472 * 322.40131 * 12 10 9 14 14 C 1.51204 * 126.17300 * 104.78792 * 12 10 9 15 15 C 1.54099 * 106.19270 * 161.43810 * 14 12 10 16 16 C 1.52497 * 112.66587 * 304.56396 * 15 14 12 17 17 N 1.47783 * 111.33884 * 47.08650 * 16 15 14 18 18 C 1.36942 * 122.78959 * 127.54778 * 17 16 15 19 19 H 1.08002 * 119.99815 * 225.85111 * 18 17 16 20 20 C 1.38810 * 120.00062 * 45.84736 * 18 17 16 21 21 N 1.31618 * 119.99839 * 207.35941 * 20 18 17 22 22 Si 1.86794 * 120.00070 * 27.36459 * 20 18 17 23 23 H 1.48500 * 109.47480 * 84.79814 * 22 20 18 24 24 H 1.48505 * 109.47263 * 204.80144 * 22 20 18 25 25 H 1.48503 * 109.47048 * 324.80168 * 22 20 18 26 26 C 1.45383 * 114.04007 * 307.12348 * 17 16 15 27 27 H 1.09000 * 112.09115 * 301.58729 * 26 17 16 28 28 C 1.49969 * 126.66278 * 156.37663 * 26 17 16 29 29 C 1.52994 * 114.08266 * 107.56764 * 28 26 17 30 30 C 1.53000 * 114.08746 * 335.14209 * 28 26 17 31 31 H 1.08999 * 109.47516 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47645 * 300.00415 * 1 2 3 33 33 H 1.09000 * 109.46699 * 60.00235 * 1 2 3 34 34 H 1.08997 * 109.46943 * 59.99502 * 3 2 1 35 35 H 1.08997 * 109.46552 * 299.99388 * 3 2 1 36 36 H 1.09009 * 109.47080 * 59.99896 * 4 3 2 37 37 H 1.09000 * 109.47579 * 300.00187 * 4 3 2 38 38 H 1.08997 * 109.46537 * 59.99923 * 5 4 3 39 39 H 1.09007 * 109.47091 * 300.00321 * 5 4 3 40 40 H 1.08997 * 109.46656 * 60.00283 * 6 5 4 41 41 H 1.09000 * 109.46957 * 300.00081 * 6 5 4 42 42 H 0.97001 * 119.99716 * 359.97438 * 9 7 6 43 43 H 1.09000 * 110.09945 * 280.60448 * 14 12 10 44 44 H 1.08989 * 110.10285 * 42.26816 * 14 12 10 45 45 H 1.08997 * 108.83950 * 65.38573 * 15 14 12 46 46 H 1.09002 * 108.84296 * 183.84576 * 15 14 12 47 47 H 1.09011 * 108.99636 * 167.40174 * 16 15 14 48 48 H 1.08993 * 109.00005 * 286.24555 * 16 15 14 49 49 H 0.97002 * 119.99647 * 179.97438 * 21 20 18 50 50 H 1.09001 * 109.47273 * 173.92452 * 29 28 26 51 51 H 1.09004 * 109.47233 * 293.91434 * 29 28 26 52 52 H 1.08998 * 109.47706 * 53.91863 * 29 28 26 53 53 H 1.09009 * 109.46742 * 332.27411 * 30 28 26 54 54 H 1.09004 * 109.46746 * 92.26689 * 30 28 26 55 55 H 1.08993 * 109.47363 * 212.27055 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6831 2.4614 0.0000 7 6 6.2960 3.8382 0.0000 8 8 5.5832 4.8194 0.0005 9 7 7.6364 3.9790 -0.0005 10 6 8.2323 5.3173 -0.0011 11 1 7.5599 6.0873 0.3773 12 6 8.9265 5.6789 -1.2806 13 1 9.4541 4.8334 -1.7224 14 6 8.4063 6.6206 -2.3430 15 6 9.6270 7.0293 -3.1901 16 6 10.7504 7.6288 -2.3510 17 7 11.0258 6.8060 -1.1547 18 6 12.2799 6.3579 -0.8355 19 1 12.4266 5.3299 -0.5384 20 6 13.3624 7.2248 -0.8937 21 7 14.5700 6.7550 -1.1246 22 14 13.1053 9.0581 -0.6443 23 1 13.1134 9.3660 0.8084 24 1 14.1982 9.8070 -1.3151 25 1 11.7999 9.4588 -1.2279 26 6 9.8509 6.5250 -0.3458 27 1 9.3654 7.4367 0.0025 28 6 9.6686 5.3750 0.5993 29 6 9.7122 5.7685 2.0772 30 6 10.5316 4.1548 0.2719 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8898 33 1 -0.3633 0.5138 -0.8900 34 1 1.6885 1.8464 0.8899 35 1 1.6887 1.8462 -0.8900 36 1 3.8574 0.6434 -0.8892 37 1 3.8568 0.6438 0.8908 38 1 3.8359 3.1237 0.8895 39 1 3.8365 3.1227 -0.8905 40 1 6.0045 1.9201 -0.8898 41 1 6.0047 1.9209 0.8902 42 1 8.2065 3.1942 -0.0005 43 1 7.6709 6.1123 -2.9666 44 1 7.9612 7.5003 -1.8784 45 1 10.0062 6.1489 -3.7087 46 1 9.3115 7.7647 -3.9303 47 1 11.6540 7.6874 -2.9578 48 1 10.4648 8.6343 -2.0421 49 1 15.3264 7.3609 -1.1657 50 1 9.4659 4.9023 2.6913 51 1 10.7124 6.1204 2.3301 52 1 8.9896 6.5630 2.2632 53 1 10.7379 4.1323 -0.7982 54 1 11.4708 4.2160 0.8218 55 1 10.0011 3.2470 0.5589 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565993285.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:14 Heat of formation + Delta-G solvation = -54.551198 kcal Electronic energy + Delta-G solvation = -30775.373234 eV Core-core repulsion = 26813.190031 eV Total energy + Delta-G solvation = -3962.183203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.42896 -40.23722 -38.89900 -37.08751 -35.62140 -34.81931 -34.40113 -32.71081 -31.02442 -30.68196 -28.57635 -27.64763 -27.34205 -26.33343 -24.77246 -23.70156 -22.51437 -21.84158 -21.21928 -20.98096 -19.74272 -18.60354 -17.80222 -17.32286 -17.29302 -16.99471 -16.86619 -16.40247 -15.98326 -15.66910 -15.54064 -15.19259 -15.16345 -14.99139 -14.81283 -14.48951 -14.22266 -14.06936 -13.64960 -13.60595 -13.41931 -13.28099 -13.06379 -12.73464 -12.70963 -12.65620 -12.61240 -12.46954 -12.35951 -12.28687 -12.01011 -11.94431 -11.85698 -11.72008 -11.56674 -11.52987 -11.45958 -11.15315 -10.72959 -10.63617 -10.60676 -10.21714 -9.78931 -8.32487 -8.17220 -5.57117 1.36091 1.43747 1.51335 1.75966 2.28253 2.49484 2.87104 3.05966 3.24528 3.45243 3.70248 3.83656 3.86744 4.00635 4.01545 4.08145 4.17746 4.34233 4.36182 4.38759 4.44202 4.46569 4.54228 4.54282 4.56094 4.61786 4.65088 4.70068 4.79645 4.83785 4.86702 4.87559 4.89108 4.94651 5.00743 5.03399 5.08108 5.11634 5.14597 5.20727 5.27329 5.29663 5.33212 5.34240 5.42912 5.50186 5.55194 5.62804 5.79319 5.99936 6.24073 6.41577 6.71067 7.05068 7.38934 7.67812 8.32546 9.01430 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025807 B = 0.002180 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.699597 B =12841.011099 C =13218.517035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.056 3.944 4 C -0.111 4.111 5 C -0.095 4.095 6 C -0.133 4.133 7 C 0.509 3.491 8 O -0.588 6.588 9 N -0.706 5.706 10 C 0.160 3.840 11 H 0.103 0.897 12 C -0.151 4.151 13 H 0.089 0.911 14 C -0.086 4.086 15 C -0.122 4.122 16 C 0.138 3.862 17 N -0.590 5.590 18 C -0.243 4.243 19 H 0.065 0.935 20 C -0.005 4.005 21 N -0.937 5.937 22 Si 0.899 3.101 23 H -0.296 1.296 24 H -0.308 1.308 25 H -0.239 1.239 26 C 0.123 3.877 27 H 0.048 0.952 28 C -0.060 4.060 29 C -0.130 4.130 30 C -0.110 4.110 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.412 0.588 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.074 0.926 47 H 0.041 0.959 48 H 0.022 0.978 49 H 0.259 0.741 50 H 0.071 0.929 51 H 0.042 0.958 52 H 0.055 0.945 53 H 0.053 0.947 54 H 0.045 0.955 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.778 -11.912 2.405 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.021 4.021 4 C -0.149 4.149 5 C -0.133 4.133 6 C -0.173 4.173 7 C 0.297 3.703 8 O -0.468 6.468 9 N -0.357 5.357 10 C 0.054 3.946 11 H 0.121 0.879 12 C -0.173 4.173 13 H 0.107 0.893 14 C -0.123 4.123 15 C -0.161 4.161 16 C 0.014 3.986 17 N -0.314 5.314 18 C -0.372 4.372 19 H 0.082 0.918 20 C -0.203 4.203 21 N -0.581 5.581 22 Si 0.728 3.272 23 H -0.224 1.224 24 H -0.235 1.235 25 H -0.163 1.163 26 C 0.016 3.984 27 H 0.065 0.935 28 C -0.062 4.062 29 C -0.187 4.187 30 C -0.167 4.167 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.250 0.750 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.059 0.941 48 H 0.040 0.960 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.061 0.939 52 H 0.074 0.926 53 H 0.072 0.928 54 H 0.064 0.936 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.951 -11.364 2.371 26.616 hybrid contribution 0.928 1.429 0.086 1.706 sum -23.022 -9.935 2.457 25.195 Atomic orbital electron populations 1.22909 0.79744 1.03761 1.00716 1.87819 1.21301 1.29000 1.95598 1.22636 0.94604 0.84177 1.00653 1.21457 0.92641 0.96902 1.03869 1.21135 0.93351 0.96140 1.02702 1.21698 0.96126 0.92711 1.06733 1.21366 0.82035 0.92563 0.74308 1.90673 1.61893 1.42610 1.51672 1.45979 1.06731 1.08923 1.74066 1.21954 0.91579 0.85493 0.95618 0.87932 1.23289 0.99240 0.99377 0.95354 0.89322 1.21074 0.96289 0.98075 0.96879 1.21849 0.95515 1.00814 0.97953 1.21293 0.96522 0.92967 0.87839 1.44015 1.03521 1.62425 1.21406 1.18764 0.82609 0.94142 1.41706 0.91785 1.26291 0.95014 1.00646 0.98352 1.70049 1.00485 1.36516 1.51015 0.86508 0.78463 0.84489 0.77742 1.22363 1.23520 1.16348 1.21812 0.88356 0.94285 0.93939 0.93459 1.21838 0.93820 0.95844 0.94657 1.21669 1.01162 1.01457 0.94449 1.21504 0.98263 0.95376 1.01545 0.88526 0.93347 0.93418 0.92917 0.93034 0.90607 0.90429 0.92096 0.92318 0.86698 0.86362 0.75015 0.92074 0.92680 0.92942 0.90793 0.94078 0.96016 0.93198 0.90986 0.93851 0.92559 0.92840 0.93604 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.08 10.70 -148.98 -1.59 -8.67 16 3 C 0.06 0.80 5.94 71.98 0.43 1.22 16 4 C -0.11 -1.42 5.58 30.59 0.17 -1.25 16 5 C -0.10 -1.44 4.50 30.59 0.14 -1.30 16 6 C -0.13 -1.80 5.70 29.85 0.17 -1.63 16 7 C 0.51 11.42 7.83 87.66 0.69 12.11 16 8 O -0.59 -18.32 15.58 -3.03 -0.05 -18.37 16 9 N -0.71 -15.27 5.32 -454.73 -2.42 -17.69 16 10 C 0.16 4.43 3.54 42.46 0.15 4.58 16 11 H 0.10 3.17 7.42 -2.39 -0.02 3.15 16 12 C -0.15 -4.75 2.82 -14.17 -0.04 -4.79 16 13 H 0.09 2.96 6.07 -2.39 -0.01 2.95 16 14 C -0.09 -2.62 6.12 30.38 0.19 -2.43 16 15 C -0.12 -4.05 5.90 30.80 0.18 -3.86 16 16 C 0.14 5.71 4.51 85.97 0.39 6.10 16 17 N -0.59 -26.20 2.18 -691.55 -1.51 -27.71 16 18 C -0.24 -12.79 9.17 84.03 0.77 -12.02 16 19 H 0.06 3.59 5.53 -2.91 -0.02 3.57 16 20 C -0.01 -0.29 5.12 84.86 0.43 0.14 16 21 N -0.94 -56.83 13.97 21.65 0.30 -56.53 16 22 Si 0.90 44.70 27.40 68.60 1.88 46.58 16 23 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 24 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 25 H -0.24 -11.07 4.81 99.48 0.48 -10.59 16 26 C 0.12 4.56 3.05 42.87 0.13 4.69 16 27 H 0.05 1.82 8.01 -2.39 -0.02 1.80 16 28 C -0.06 -1.85 1.37 -55.19 -0.08 -1.92 16 29 C -0.13 -3.74 9.22 71.98 0.66 -3.08 16 30 C -0.11 -3.33 6.87 71.98 0.49 -2.84 16 31 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 39 H 0.06 1.05 8.10 -2.38 -0.02 1.03 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.41 6.89 6.79 -92.71 -0.63 6.26 16 43 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 1.69 8.05 -2.39 -0.02 1.67 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.04 1.86 7.33 -2.38 -0.02 1.84 16 48 H 0.02 0.91 6.45 -2.39 -0.02 0.90 16 49 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 50 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 52 H 0.06 1.54 8.12 -2.39 -0.02 1.52 16 53 H 0.05 1.86 5.53 -2.38 -0.01 1.85 16 54 H 0.04 1.61 7.35 -2.38 -0.02 1.59 16 55 H 0.08 1.66 6.61 -2.39 -0.02 1.64 16 Total: -1.00 -68.87 414.18 2.73 -66.14 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.00 Total: 21.02 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 6.12 Total: -4.77 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -3.62 Total: -101.93 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -1.64 Total: -27.04 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -68.87 2.73 -66.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565993285.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.584 kcal (2) G-P(sol) polarization free energy of solvation -68.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds