Wall clock time and date at job start Tue Mar 31 2020 22:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42910 * 113.99893 * 2 1 4 4 C 1.52999 * 109.47117 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47126 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47421 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47463 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99608 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00298 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00247 * 179.97438 * 9 7 6 11 11 H 1.08998 * 112.86840 * 23.73320 * 10 9 7 12 12 C 1.54149 * 113.64154 * 252.34882 * 10 9 7 13 13 H 1.09008 * 114.24613 * 26.68243 * 12 10 9 14 14 C 1.53062 * 111.69001 * 157.46542 * 12 10 9 15 15 C 1.53019 * 109.40887 * 146.40575 * 14 12 10 16 16 C 1.52935 * 108.93427 * 295.35670 * 15 14 12 17 17 N 1.45888 * 109.89140 * 57.34275 * 16 15 14 18 18 C 1.36939 * 118.48556 * 140.64521 * 17 16 15 19 19 H 1.07997 * 119.99685 * 205.39474 * 18 17 16 20 20 C 1.38813 * 120.00120 * 25.38876 * 18 17 16 21 21 N 1.31620 * 119.99642 * 16.95413 * 20 18 17 22 22 Si 1.86799 * 120.00164 * 196.95250 * 20 18 17 23 23 H 1.48498 * 109.47010 * 84.98834 * 22 20 18 24 24 H 1.48498 * 109.47095 * 204.99162 * 22 20 18 25 25 H 1.48504 * 109.46938 * 324.99075 * 22 20 18 26 26 C 1.45092 * 123.03155 * 320.66427 * 17 16 15 27 27 H 1.08999 * 111.58261 * 156.43156 * 26 17 16 28 28 C 1.53394 * 114.62768 * 286.24076 * 26 17 16 29 29 C 1.52996 * 113.68756 * 28.88875 * 28 26 17 30 30 C 1.52999 * 113.77308 * 257.76673 * 28 26 17 31 31 H 1.08998 * 109.47034 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46787 * 299.99217 * 1 2 3 33 33 H 1.08998 * 109.47544 * 59.99429 * 1 2 3 34 34 H 1.08998 * 109.46578 * 60.00399 * 3 2 1 35 35 H 1.08993 * 109.46908 * 300.00618 * 3 2 1 36 36 H 1.09004 * 109.46692 * 60.00530 * 4 3 2 37 37 H 1.08999 * 109.47458 * 300.00765 * 4 3 2 38 38 H 1.09004 * 109.46819 * 60.00709 * 5 4 3 39 39 H 1.09002 * 109.47167 * 300.00758 * 5 4 3 40 40 H 1.09004 * 109.46892 * 59.99917 * 6 5 4 41 41 H 1.08999 * 109.47145 * 300.00855 * 6 5 4 42 42 H 0.97008 * 119.99784 * 0.02562 * 9 7 6 43 43 H 1.09005 * 109.47833 * 266.38234 * 14 12 10 44 44 H 1.08989 * 109.48011 * 26.42513 * 14 12 10 45 45 H 1.09000 * 109.56203 * 175.51421 * 15 14 12 46 46 H 1.09006 * 109.55908 * 55.19250 * 15 14 12 47 47 H 1.09000 * 109.39883 * 297.21383 * 16 15 14 48 48 H 1.09005 * 109.33405 * 177.43214 * 16 15 14 49 49 H 0.96999 * 119.99712 * 179.97438 * 21 20 18 50 50 H 1.09003 * 109.47265 * 143.99171 * 29 28 26 51 51 H 1.09001 * 109.47376 * 23.98843 * 29 28 26 52 52 H 1.09006 * 109.47181 * 263.99018 * 29 28 26 53 53 H 1.09001 * 109.47257 * 181.83836 * 30 28 26 54 54 H 1.09003 * 109.47546 * 301.83676 * 30 28 26 55 55 H 1.08997 * 109.47187 * 61.84022 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1577 2.5825 -0.0013 6 6 5.6829 2.4618 -0.0026 7 6 6.2958 3.8385 -0.0026 8 8 5.5829 4.8196 -0.0012 9 7 7.6362 3.9795 -0.0031 10 6 8.2320 5.3178 -0.0037 11 1 7.5645 6.0788 0.4006 12 6 8.8741 5.7080 -1.3496 13 1 8.4396 5.2070 -2.2148 14 6 8.9788 7.2269 -1.5072 15 6 10.2421 7.5700 -2.2996 16 6 11.4673 7.1470 -1.4879 17 7 11.3927 5.7224 -1.1825 18 6 12.5431 4.9816 -1.2374 19 1 12.4929 3.9195 -1.4264 20 6 13.7738 5.5958 -1.0502 21 7 13.8365 6.7896 -0.4994 22 14 15.3409 4.7282 -1.5801 23 1 15.5889 4.9902 -3.0206 24 1 16.4836 5.2380 -0.7803 25 1 15.1960 3.2667 -1.3606 26 6 10.1559 5.0542 -0.8236 27 1 10.2022 3.9854 -1.0329 28 6 9.6503 5.3620 0.5915 29 6 10.0594 6.7446 1.1031 30 6 9.9279 4.2471 1.6018 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.6886 1.8464 0.8900 35 1 1.6885 1.8464 -0.8899 36 1 3.8566 0.6441 -0.8910 37 1 3.8575 0.6436 0.8890 38 1 3.8365 3.1236 0.8888 39 1 3.8355 3.1232 -0.8912 40 1 6.0038 1.9208 -0.8928 41 1 6.0053 1.9209 0.8871 42 1 8.2064 3.1947 -0.0039 43 1 8.1034 7.5983 -2.0400 44 1 9.0299 7.6917 -0.5227 45 1 10.2781 8.6440 -2.4820 46 1 10.2324 7.0369 -3.2504 47 1 11.4996 7.7154 -0.5584 48 1 12.3696 7.3467 -2.0659 49 1 14.6965 7.2186 -0.3683 50 1 9.2540 7.1611 1.7083 51 1 10.2549 7.4023 0.2562 52 1 10.9607 6.6556 1.7096 53 1 9.5128 4.5234 2.5710 54 1 9.4646 3.3220 1.2585 55 1 11.0040 4.1015 1.6956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565993287.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:25 Heat of formation + Delta-G solvation = -59.470076 kcal Electronic energy + Delta-G solvation = -30886.062006 eV Core-core repulsion = 26923.665504 eV Total energy + Delta-G solvation = -3962.396502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 5.13 seconds Orbital eigenvalues (eV) -42.30880 -40.25019 -38.90319 -36.97610 -35.62969 -34.79917 -33.94971 -32.25313 -31.43779 -30.70825 -28.27195 -27.55493 -27.13833 -26.23657 -24.63575 -24.05119 -22.72875 -22.11822 -21.20062 -20.78387 -19.06816 -18.67769 -17.88160 -17.32914 -17.28529 -17.07167 -16.56247 -16.46105 -16.10274 -15.84572 -15.63772 -15.40966 -14.99635 -14.85005 -14.59566 -14.18749 -14.09386 -13.74207 -13.57328 -13.53243 -13.41599 -13.15685 -12.92629 -12.83772 -12.73775 -12.63336 -12.53605 -12.44045 -12.35778 -12.28300 -12.06499 -11.96496 -11.86385 -11.57149 -11.54227 -11.38047 -11.11703 -10.98560 -10.78481 -10.60881 -10.60734 -10.29627 -9.79586 -8.53933 -7.77767 -5.21301 1.47618 1.50263 1.56480 1.71988 2.21705 2.55335 2.86637 3.33961 3.58570 3.71340 3.78168 3.83336 3.98383 4.00786 4.02737 4.07255 4.30270 4.34907 4.37881 4.42612 4.44656 4.50756 4.54034 4.55829 4.61263 4.71072 4.73830 4.78497 4.81974 4.84476 4.86485 4.87412 4.94868 4.97936 5.02070 5.03699 5.11780 5.13703 5.16928 5.32024 5.32346 5.34963 5.41797 5.43975 5.54907 5.58372 5.64707 5.73432 5.80703 6.00004 6.23855 6.45733 6.65818 7.26575 7.34654 8.04660 8.40805 9.25169 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.002195 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.489545 B =12751.476638 C =13303.268279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.056 3.944 4 C -0.111 4.111 5 C -0.095 4.095 6 C -0.133 4.133 7 C 0.510 3.490 8 O -0.586 6.586 9 N -0.701 5.701 10 C 0.144 3.856 11 H 0.085 0.915 12 C -0.123 4.123 13 H 0.073 0.927 14 C -0.103 4.103 15 C -0.133 4.133 16 C 0.187 3.813 17 N -0.581 5.581 18 C -0.262 4.262 19 H 0.065 0.935 20 C -0.044 4.044 21 N -0.927 5.927 22 Si 0.955 3.045 23 H -0.290 1.290 24 H -0.300 1.300 25 H -0.271 1.271 26 C 0.174 3.826 27 H 0.072 0.928 28 C -0.110 4.110 29 C -0.130 4.130 30 C -0.120 4.120 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.412 0.588 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.049 0.951 47 H 0.020 0.980 48 H 0.031 0.969 49 H 0.246 0.754 50 H 0.052 0.948 51 H 0.084 0.916 52 H 0.029 0.971 53 H 0.052 0.948 54 H 0.069 0.931 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.184 -9.975 1.498 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.020 4.020 4 C -0.149 4.149 5 C -0.133 4.133 6 C -0.172 4.172 7 C 0.299 3.701 8 O -0.467 6.467 9 N -0.352 5.352 10 C 0.037 3.963 11 H 0.103 0.897 12 C -0.144 4.144 13 H 0.091 0.909 14 C -0.140 4.140 15 C -0.172 4.172 16 C 0.062 3.938 17 N -0.300 5.300 18 C -0.393 4.393 19 H 0.083 0.917 20 C -0.240 4.240 21 N -0.573 5.573 22 Si 0.785 3.215 23 H -0.217 1.217 24 H -0.227 1.227 25 H -0.196 1.196 26 C 0.065 3.935 27 H 0.089 0.911 28 C -0.114 4.114 29 C -0.187 4.187 30 C -0.178 4.178 31 H 0.115 0.885 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.250 0.750 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.037 0.963 48 H 0.049 0.951 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.102 0.898 52 H 0.049 0.951 53 H 0.071 0.929 54 H 0.088 0.912 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -21.434 -9.368 1.525 23.441 hybrid contribution 1.499 -0.094 -0.156 1.510 sum -19.935 -9.462 1.369 22.109 Atomic orbital electron populations 1.22911 0.79730 1.03763 1.00726 1.87821 1.21318 1.28993 1.95601 1.22633 0.94547 0.84182 1.00684 1.21453 0.92696 0.96846 1.03885 1.21136 0.93187 0.96215 1.02768 1.21700 0.96217 0.92460 1.06825 1.21386 0.81751 0.92684 0.74279 1.90672 1.61796 1.42627 1.51571 1.45770 1.06793 1.08474 1.74161 1.21920 0.93060 0.85151 0.96182 0.89706 1.23160 0.97177 0.96890 0.97211 0.90910 1.21496 0.97300 0.93996 1.01247 1.21922 0.96076 1.00412 0.98788 1.20393 0.94139 0.83669 0.95588 1.43395 1.03449 1.05408 1.77721 1.19498 0.85369 0.92990 1.41414 0.91740 1.25577 1.00300 0.98053 1.00053 1.70213 1.23880 1.17050 1.46169 0.85461 0.80168 0.78525 0.77319 1.21747 1.22668 1.19625 1.21521 0.84768 0.95140 0.92110 0.91058 1.22836 0.94101 0.96515 0.97965 1.21925 0.99012 0.96178 1.01548 1.21524 1.00484 0.97662 0.98105 0.88529 0.93354 0.93383 0.92900 0.92980 0.90569 0.90457 0.92077 0.92200 0.86551 0.86369 0.75039 0.91543 0.90538 0.91162 0.93181 0.96264 0.95089 0.94506 0.92930 0.89766 0.95143 0.92908 0.91196 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.27 10.70 -148.98 -1.59 -8.87 16 3 C 0.06 0.83 5.94 71.98 0.43 1.25 16 4 C -0.11 -1.49 5.58 30.59 0.17 -1.32 16 5 C -0.09 -1.51 4.50 30.59 0.14 -1.37 16 6 C -0.13 -1.95 5.70 29.85 0.17 -1.78 16 7 C 0.51 12.21 7.83 87.66 0.69 12.90 16 8 O -0.59 -19.04 15.58 -3.02 -0.05 -19.09 16 9 N -0.70 -16.68 4.69 -439.34 -2.06 -18.74 16 10 C 0.14 4.30 3.34 45.67 0.15 4.46 16 11 H 0.08 2.79 7.35 -2.39 -0.02 2.78 16 12 C -0.12 -4.05 4.12 -10.32 -0.04 -4.09 16 13 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 14 C -0.10 -3.38 5.18 30.62 0.16 -3.22 16 15 C -0.13 -4.91 6.04 30.58 0.18 -4.73 16 16 C 0.19 8.68 4.01 86.47 0.35 9.02 16 17 N -0.58 -27.09 2.67 -681.85 -1.82 -28.91 16 18 C -0.26 -13.69 9.47 84.03 0.80 -12.89 16 19 H 0.06 3.30 7.83 -2.91 -0.02 3.28 16 20 C -0.04 -2.38 4.84 84.86 0.41 -1.97 16 21 N -0.93 -52.90 11.03 21.65 0.24 -52.66 16 22 Si 0.96 44.16 29.59 68.60 2.03 46.19 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 C 0.17 6.55 3.37 45.45 0.15 6.70 16 27 H 0.07 2.63 7.84 -2.39 -0.02 2.61 16 28 C -0.11 -3.72 1.34 -51.76 -0.07 -3.79 16 29 C -0.13 -4.85 7.38 71.98 0.53 -4.32 16 30 C -0.12 -3.67 8.93 71.98 0.64 -3.03 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 39 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 40 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.41 7.99 6.84 -92.70 -0.63 7.35 16 43 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.08 2.56 4.72 -2.39 -0.01 2.54 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.05 1.86 8.14 -2.38 -0.02 1.85 16 47 H 0.02 0.98 5.63 -2.39 -0.01 0.97 16 48 H 0.03 1.65 6.49 -2.38 -0.02 1.63 16 49 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 50 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.08 3.36 1.91 -2.39 0.00 3.35 16 52 H 0.03 1.28 8.03 -2.38 -0.02 1.26 16 53 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 54 H 0.07 1.70 5.97 -2.39 -0.01 1.68 16 55 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -66.14 411.55 3.08 -63.06 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.23 Total: 25.67 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 6.10 Total: -6.66 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -3.64 Total: -100.31 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -1.64 Total: -27.96 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -66.14 3.08 -63.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565993287.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.593 kcal (2) G-P(sol) polarization free energy of solvation -66.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.13 seconds