Wall clock time and date at job start Tue Mar 31 2020 22:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 114.00342 * 2 1 4 4 C 1.52997 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47307 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47307 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47114 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00114 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99949 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00253 * 179.97438 * 9 7 6 11 11 H 1.09005 * 112.85942 * 23.73732 * 10 9 7 12 12 C 1.52246 * 113.10211 * 251.63148 * 10 9 7 13 13 H 1.09001 * 113.67089 * 103.48155 * 12 10 9 14 14 C 1.51670 * 113.54523 * 334.34123 * 12 10 9 15 15 C 1.53024 * 110.04026 * 213.36664 * 14 12 10 16 16 C 1.52946 * 108.92896 * 63.74963 * 15 14 12 17 17 N 1.45891 * 109.88752 * 302.65044 * 16 15 14 18 18 C 1.36940 * 118.48515 * 219.35936 * 17 16 15 19 19 H 1.07997 * 119.99889 * 153.35082 * 18 17 16 20 20 C 1.38813 * 120.00080 * 333.35331 * 18 17 16 21 21 N 1.31622 * 119.99784 * 344.13684 * 20 18 17 22 22 Si 1.86796 * 120.00216 * 164.13437 * 20 18 17 23 23 H 1.48506 * 109.46804 * 90.00009 * 22 20 18 24 24 H 1.48495 * 109.47293 * 209.99760 * 22 20 18 25 25 H 1.48495 * 109.47177 * 330.00483 * 22 20 18 26 26 C 1.45088 * 123.03319 * 39.34547 * 17 16 15 27 27 H 1.09009 * 112.25703 * 204.20954 * 26 17 16 28 28 C 1.53388 * 114.63111 * 73.76176 * 26 17 16 29 29 C 1.52995 * 113.68412 * 331.11349 * 28 26 17 30 30 C 1.52996 * 113.68897 * 102.15117 * 28 26 17 31 31 H 1.09001 * 109.47039 * 300.00327 * 1 2 3 32 32 H 1.08997 * 109.46938 * 59.99760 * 1 2 3 33 33 H 1.08993 * 109.47367 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46710 * 59.99653 * 3 2 1 35 35 H 1.09001 * 109.47072 * 300.00648 * 3 2 1 36 36 H 1.08996 * 109.46961 * 59.99695 * 4 3 2 37 37 H 1.09004 * 109.46689 * 300.00373 * 4 3 2 38 38 H 1.08996 * 109.47655 * 59.99758 * 5 4 3 39 39 H 1.09007 * 109.46807 * 299.99875 * 5 4 3 40 40 H 1.09005 * 109.47019 * 59.99578 * 6 5 4 41 41 H 1.08994 * 109.47338 * 299.99588 * 6 5 4 42 42 H 0.97008 * 119.99895 * 0.02562 * 9 7 6 43 43 H 1.08994 * 109.89546 * 92.73298 * 14 12 10 44 44 H 1.08999 * 108.43136 * 333.08630 * 14 12 10 45 45 H 1.08992 * 109.56259 * 303.91788 * 15 14 12 46 46 H 1.08992 * 109.55856 * 183.58100 * 15 14 12 47 47 H 1.09000 * 109.40178 * 62.77996 * 16 15 14 48 48 H 1.09005 * 109.39879 * 182.52733 * 16 15 14 49 49 H 0.96995 * 119.99887 * 179.97438 * 21 20 18 50 50 H 1.08998 * 109.47176 * 91.64783 * 29 28 26 51 51 H 1.08999 * 109.47319 * 211.64510 * 29 28 26 52 52 H 1.09003 * 109.47300 * 331.64770 * 29 28 26 53 53 H 1.09005 * 109.47372 * 59.99733 * 30 28 26 54 54 H 1.08995 * 109.47822 * 180.02562 * 30 28 26 55 55 H 1.09007 * 109.46915 * 300.00267 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1579 2.5823 0.0000 6 6 5.6831 2.4615 -0.0013 7 6 6.2960 3.8382 -0.0013 8 8 5.5832 4.8194 0.0001 9 7 7.6364 3.9791 -0.0018 10 6 8.2324 5.3174 -0.0024 11 1 7.5648 6.0784 0.4020 12 6 8.8780 5.6833 -1.3317 13 1 8.2827 6.3704 -1.9330 14 6 9.3295 4.4802 -2.1375 15 6 10.5927 4.8238 -2.9298 16 6 11.7242 5.1351 -1.9491 17 7 11.3288 6.2263 -1.0652 18 6 12.2644 7.1694 -0.7328 19 1 11.9531 8.1692 -0.4686 20 6 13.6129 6.8402 -0.7355 21 7 13.9820 5.5769 -0.7463 22 14 14.9039 8.1903 -0.7238 23 1 15.2458 8.5360 0.6794 24 1 16.1224 7.7161 -1.4277 25 1 14.3697 9.3919 -1.4135 26 6 9.9898 6.3587 -0.5222 27 1 9.7525 7.3885 -0.2551 28 6 9.6506 5.3614 0.5928 29 6 10.4053 4.0352 0.4817 30 6 9.7117 5.9655 1.9972 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.6887 1.8464 0.8900 35 1 1.6887 1.8464 -0.8899 36 1 3.8568 0.6439 -0.8908 37 1 3.8575 0.6435 0.8891 38 1 3.8366 3.1227 0.8904 39 1 3.8359 3.1238 -0.8896 40 1 6.0040 1.9212 -0.8920 41 1 6.0054 1.9200 0.8880 42 1 8.2066 3.1943 -0.0026 43 1 8.5402 4.1770 -2.8252 44 1 9.5439 3.6641 -1.4475 45 1 10.4041 5.6946 -3.5576 46 1 10.8738 3.9757 -3.5541 47 1 11.9421 4.2481 -1.3542 48 1 12.6159 5.4246 -2.5051 49 1 14.9242 5.3469 -0.7485 50 1 11.3308 4.0947 1.0544 51 1 9.7852 3.2302 0.8760 52 1 10.6376 3.8359 -0.5645 53 1 9.0004 6.7882 2.0701 54 1 9.4606 5.2013 2.7327 55 1 10.7182 6.3373 2.1893 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565993288.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:36 Heat of formation + Delta-G solvation = -57.797553 kcal Electronic energy + Delta-G solvation = -31029.952131 eV Core-core repulsion = 27067.628156 eV Total energy + Delta-G solvation = -3962.323976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.47630 -40.20154 -38.89619 -36.90391 -35.61788 -34.50984 -34.37543 -32.17343 -31.49832 -30.74658 -28.34247 -27.55498 -27.22137 -26.24816 -24.78759 -23.94272 -22.71041 -21.92744 -21.16029 -20.69816 -19.06902 -18.71577 -17.90687 -17.30996 -17.26930 -17.03822 -16.56732 -16.45795 -16.27007 -15.94417 -15.66257 -15.27578 -14.97230 -14.83841 -14.66566 -14.25985 -14.00806 -13.78303 -13.58546 -13.46764 -13.39276 -13.07433 -12.92313 -12.82496 -12.78090 -12.61301 -12.49305 -12.46688 -12.35338 -12.28133 -12.10047 -11.96125 -11.85698 -11.56001 -11.53078 -11.42087 -11.17669 -10.93999 -10.81913 -10.60583 -10.58788 -10.29989 -9.76800 -8.52376 -7.79464 -5.23724 1.45398 1.48322 1.56104 1.75952 2.29687 2.54971 2.87968 3.32544 3.57485 3.71162 3.78460 3.86870 3.93395 4.01320 4.01764 4.06404 4.30124 4.35795 4.38780 4.44201 4.45480 4.52566 4.54307 4.56199 4.64092 4.70303 4.71369 4.79428 4.82410 4.86311 4.87119 4.88097 4.92047 4.97564 5.03206 5.05562 5.12276 5.14386 5.19196 5.31189 5.33197 5.37598 5.42162 5.46098 5.58046 5.62249 5.63636 5.73797 5.77559 6.00286 6.24133 6.45376 6.70233 7.26250 7.38118 8.04101 8.38927 9.22950 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.030591 B = 0.002113 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.093331 B =13250.950572 C =13511.349641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.056 3.944 4 C -0.111 4.111 5 C -0.095 4.095 6 C -0.134 4.134 7 C 0.508 3.492 8 O -0.590 6.590 9 N -0.704 5.704 10 C 0.148 3.852 11 H 0.099 0.901 12 C -0.126 4.126 13 H 0.060 0.940 14 C -0.094 4.094 15 C -0.136 4.136 16 C 0.188 3.812 17 N -0.578 5.578 18 C -0.267 4.267 19 H 0.057 0.943 20 C -0.039 4.039 21 N -0.923 5.923 22 Si 0.954 3.046 23 H -0.289 1.289 24 H -0.293 1.293 25 H -0.277 1.277 26 C 0.167 3.833 27 H 0.062 0.938 28 C -0.107 4.107 29 C -0.130 4.130 30 C -0.122 4.122 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.411 0.589 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.024 0.976 48 H 0.028 0.972 49 H 0.247 0.753 50 H 0.029 0.971 51 H 0.066 0.934 52 H 0.087 0.913 53 H 0.054 0.946 54 H 0.057 0.943 55 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.669 -12.026 0.987 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.021 4.021 4 C -0.149 4.149 5 C -0.133 4.133 6 C -0.173 4.173 7 C 0.297 3.703 8 O -0.471 6.471 9 N -0.356 5.356 10 C 0.042 3.958 11 H 0.117 0.883 12 C -0.147 4.147 13 H 0.079 0.921 14 C -0.131 4.131 15 C -0.175 4.175 16 C 0.064 3.936 17 N -0.297 5.297 18 C -0.397 4.397 19 H 0.075 0.925 20 C -0.235 4.235 21 N -0.569 5.569 22 Si 0.783 3.217 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.203 1.203 26 C 0.058 3.942 27 H 0.080 0.920 28 C -0.111 4.111 29 C -0.186 4.186 30 C -0.180 4.180 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.250 0.750 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.093 0.907 47 H 0.042 0.958 48 H 0.047 0.953 49 H 0.056 0.944 50 H 0.048 0.952 51 H 0.084 0.916 52 H 0.105 0.895 53 H 0.073 0.927 54 H 0.076 0.924 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -20.888 -11.582 0.960 23.904 hybrid contribution 1.305 1.146 0.159 1.744 sum -19.583 -10.436 1.119 22.219 Atomic orbital electron populations 1.22912 0.79736 1.03766 1.00717 1.87820 1.21310 1.28990 1.95599 1.22634 0.94588 0.84178 1.00654 1.21451 0.92650 0.96859 1.03893 1.21131 0.93289 0.96180 1.02696 1.21706 0.96179 0.92663 1.06774 1.21389 0.82034 0.92590 0.74315 1.90666 1.61913 1.42658 1.51814 1.46024 1.06661 1.08914 1.73956 1.21984 0.92332 0.85481 0.95999 0.88314 1.22559 0.97130 0.98714 0.96287 0.92112 1.21175 0.96598 0.97008 0.98321 1.21944 0.96606 1.00624 0.98277 1.20405 0.93531 0.89812 0.89894 1.43277 1.06301 1.28073 1.52034 1.19438 0.87620 0.91358 1.41330 0.92543 1.25545 0.99121 0.97397 1.01435 1.70176 1.14983 1.16299 1.55436 0.85490 0.79254 0.79655 0.77278 1.21562 1.21941 1.20284 1.21255 0.84569 0.95782 0.92643 0.92038 1.22909 0.93740 0.98247 0.96252 1.21908 0.98293 0.94651 1.03784 1.21568 1.00487 1.00045 0.95862 0.93378 0.93384 0.88512 0.92961 0.92989 0.90495 0.90497 0.92195 0.92233 0.86479 0.86511 0.75040 0.91403 0.89769 0.93714 0.90691 0.95791 0.95325 0.94352 0.95211 0.91571 0.89504 0.92703 0.92395 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.25 10.70 -148.98 -1.59 -8.84 16 3 C 0.06 0.82 5.94 71.98 0.43 1.25 16 4 C -0.11 -1.48 5.58 30.59 0.17 -1.31 16 5 C -0.09 -1.51 4.50 30.59 0.14 -1.37 16 6 C -0.13 -1.95 5.70 29.85 0.17 -1.78 16 7 C 0.51 12.07 7.83 87.66 0.69 12.76 16 8 O -0.59 -19.15 15.58 -3.01 -0.05 -19.20 16 9 N -0.70 -16.46 4.35 -442.34 -1.92 -18.39 16 10 C 0.15 4.42 3.65 45.03 0.16 4.58 16 11 H 0.10 3.22 7.30 -2.38 -0.02 3.21 16 12 C -0.13 -4.14 3.99 -11.45 -0.05 -4.19 16 13 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 14 C -0.09 -2.78 4.68 30.17 0.14 -2.64 16 15 C -0.14 -4.76 6.06 30.58 0.19 -4.58 16 16 C 0.19 8.50 4.00 86.48 0.35 8.85 16 17 N -0.58 -27.29 2.67 -681.81 -1.82 -29.10 16 18 C -0.27 -14.32 9.46 84.03 0.80 -13.52 16 19 H 0.06 3.05 7.85 -2.91 -0.02 3.02 16 20 C -0.04 -2.11 4.86 84.86 0.41 -1.70 16 21 N -0.92 -52.08 11.05 21.65 0.24 -51.84 16 22 Si 0.95 44.66 29.58 68.60 2.03 46.69 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 26 C 0.17 6.64 3.60 45.45 0.16 6.80 16 27 H 0.06 2.57 7.97 -2.38 -0.02 2.55 16 28 C -0.11 -3.62 1.35 -51.81 -0.07 -3.69 16 29 C -0.13 -4.32 6.84 71.98 0.49 -3.83 16 30 C -0.12 -4.06 9.16 71.98 0.66 -3.40 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 39 H 0.06 1.10 8.10 -2.38 -0.02 1.08 16 40 H 0.12 1.22 8.14 -2.38 -0.02 1.21 16 41 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.41 7.87 5.67 -92.70 -0.53 7.34 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.08 2.31 3.65 -2.39 -0.01 2.30 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.02 1.15 5.66 -2.39 -0.01 1.14 16 48 H 0.03 1.49 6.55 -2.38 -0.02 1.48 16 49 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 50 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 51 H 0.07 1.67 6.54 -2.39 -0.02 1.66 16 52 H 0.09 3.03 1.99 -2.39 0.00 3.02 16 53 H 0.05 1.69 7.95 -2.38 -0.02 1.67 16 54 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 55 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -66.32 409.30 3.31 -63.01 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.34 Total: 23.91 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 6.09 Total: -6.23 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -3.50 Total: -99.34 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -1.64 Total: -28.04 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.32 3.31 -63.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565993288.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.212 kcal (2) G-P(sol) polarization free energy of solvation -66.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds