Wall clock time and date at job start Tue Mar 31 2020 20:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99590 * 2 1 4 4 H 1.48500 * 109.47020 * 269.99668 * 3 2 1 5 5 H 1.48502 * 109.47628 * 29.99980 * 3 2 1 6 6 H 1.48506 * 109.46941 * 149.99885 * 3 2 1 7 7 C 1.38805 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00202 * 161.20011 * 7 2 1 9 9 N 1.36943 * 119.99832 * 341.20049 * 7 2 1 10 10 C 1.46495 * 120.00264 * 321.49366 * 9 7 2 11 11 C 1.53004 * 109.47124 * 264.67309 * 10 9 7 12 12 O 1.42902 * 109.47201 * 64.99984 * 11 10 9 13 13 C 1.46505 * 119.99596 * 141.49253 * 9 7 2 14 14 H 1.09001 * 109.49193 * 179.97438 * 13 9 7 15 15 C 1.53042 * 109.49707 * 59.84359 * 13 9 7 16 16 C 1.53043 * 109.53826 * 178.68140 * 15 13 9 17 17 C 1.52761 * 109.38222 * 61.23594 * 16 15 13 18 18 N 1.46926 * 109.00779 * 305.58891 * 17 16 15 19 19 C 1.34784 * 120.63106 * 233.58015 * 18 17 16 20 20 O 1.21278 * 119.99901 * 185.30284 * 19 18 17 21 21 C 1.50697 * 119.99654 * 5.31628 * 19 18 17 22 22 C 1.54072 * 108.87492 * 203.28442 * 21 19 18 23 23 C 1.54064 * 112.81771 * 197.50017 * 22 21 19 24 24 C 1.50468 * 112.50029 * 318.28609 * 23 22 21 25 25 C 1.54237 * 108.52073 * 94.15075 * 24 23 22 26 26 C 1.45547 * 112.40735 * 280.00737 * 25 24 23 27 27 C 1.50475 * 108.88166 * 80.30961 * 21 19 18 28 28 C 1.46926 * 118.74025 * 53.31328 * 18 17 16 29 29 H 0.97001 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47056 * 24.67392 * 10 9 7 31 31 H 1.09000 * 109.47040 * 144.66960 * 10 9 7 32 32 H 1.08997 * 109.47053 * 184.99622 * 11 10 9 33 33 H 1.08994 * 109.46924 * 305.00061 * 11 10 9 34 34 H 0.96695 * 114.00374 * 180.02562 * 12 11 10 35 35 H 1.09004 * 109.45529 * 298.70018 * 15 13 9 36 36 H 1.09000 * 109.46294 * 58.66968 * 15 13 9 37 37 H 1.08992 * 109.49901 * 181.31431 * 16 15 13 38 38 H 1.08995 * 109.49364 * 301.41361 * 16 15 13 39 39 H 1.09004 * 109.50879 * 185.70985 * 17 16 15 40 40 H 1.09000 * 109.43207 * 65.42262 * 17 16 15 41 41 H 1.09004 * 108.76804 * 321.79205 * 21 19 18 42 42 H 1.09002 * 108.81272 * 318.36591 * 22 21 19 43 43 H 1.08998 * 108.81119 * 76.64078 * 22 21 19 44 44 H 1.09003 * 108.87947 * 197.50170 * 23 22 21 45 45 H 1.09006 * 108.87391 * 79.06004 * 23 22 21 46 46 H 1.09002 * 109.63107 * 334.43786 * 24 23 22 47 47 H 1.08998 * 109.62695 * 213.85577 * 24 23 22 48 48 H 1.08996 * 108.89772 * 40.76384 * 25 24 23 49 49 H 1.09000 * 108.89974 * 159.25636 * 25 24 23 50 50 H 1.08997 * 108.89791 * 182.68762 * 26 25 24 51 51 H 1.08999 * 108.89629 * 301.18427 * 26 25 24 52 52 H 1.08992 * 109.62810 * 95.21592 * 27 21 19 53 53 H 1.08993 * 109.78444 * 334.72735 * 27 21 19 54 54 H 1.08996 * 109.58837 * 66.42473 * 28 18 17 55 55 H 1.09001 * 109.58617 * 186.71497 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0471 -1.2271 -0.3009 9 7 1.3804 -2.3562 0.3832 10 6 0.4270 -2.3363 1.4954 11 6 1.1418 -2.7383 2.7871 12 8 2.1246 -1.7537 3.1139 13 6 1.6600 -3.6109 -0.3196 14 1 1.0708 -4.4144 0.1223 15 6 3.1493 -3.9424 -0.2002 16 6 3.4364 -5.2696 -0.9060 17 6 3.0863 -5.1421 -2.3875 18 7 1.6973 -4.6797 -2.5128 19 6 0.8112 -5.3630 -3.2641 20 8 -0.3046 -4.9208 -3.4381 21 6 1.2069 -6.6766 -3.8877 22 6 0.3019 -6.9427 -5.1059 23 6 0.3200 -8.4170 -5.5530 24 6 1.7022 -9.0109 -5.5227 25 6 1.9021 -9.7178 -4.1665 26 6 2.2297 -8.7856 -3.0979 27 6 1.1056 -7.7594 -2.8478 28 6 1.2911 -3.4615 -1.7989 29 1 -0.4850 0.8401 -0.0004 30 1 0.0169 -1.3323 1.6044 31 1 -0.3813 -3.0391 1.2935 32 1 0.4158 -2.8097 3.5969 33 1 1.6274 -3.7041 2.6481 34 1 2.6182 -1.9442 3.9233 35 1 3.7360 -3.1497 -0.6645 36 1 3.4197 -4.0252 0.8525 37 1 4.4927 -5.5167 -0.8006 38 1 2.8314 -6.0580 -0.4583 39 1 3.1933 -6.1128 -2.8717 40 1 3.7552 -4.4212 -2.8575 41 1 2.2411 -6.6072 -4.2252 42 1 -0.7209 -6.6651 -4.8513 43 1 0.6368 -6.3198 -5.9353 44 1 -0.0698 -8.4823 -6.5688 45 1 -0.3263 -8.9940 -4.8915 46 1 2.4433 -8.2197 -5.6360 47 1 1.8078 -9.7339 -6.3315 48 1 0.9852 -10.2461 -3.9053 49 1 2.7101 -10.4432 -4.2622 50 1 2.4051 -9.3476 -2.1806 51 1 3.1425 -8.2519 -3.3626 52 1 0.1364 -8.2519 -2.9252 53 1 1.2186 -7.3277 -1.8534 54 1 1.8107 -2.6008 -2.2198 55 1 0.2145 -3.3223 -1.8969 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566031844.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:25 Heat of formation + Delta-G solvation = -101.980729 kcal Electronic energy + Delta-G solvation = -32190.258928 eV Core-core repulsion = 28226.019026 eV Total energy + Delta-G solvation = -3964.239902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.67144 -39.56404 -38.64332 -37.69957 -36.27481 -34.02340 -33.32369 -33.03523 -32.84307 -31.16524 -29.08164 -27.00654 -26.04578 -25.75880 -25.16358 -23.78731 -22.29290 -21.77618 -21.40694 -20.67394 -19.31079 -18.47359 -18.21930 -18.05247 -17.16612 -16.80774 -16.42055 -16.19098 -15.77814 -15.53844 -15.35032 -15.24435 -15.01756 -14.92035 -14.66068 -14.36212 -14.18774 -14.02966 -13.85502 -13.84533 -13.44991 -13.14055 -13.04258 -13.01253 -12.88165 -12.74660 -12.47772 -12.28940 -12.16383 -11.90959 -11.81811 -11.73676 -11.64153 -11.57424 -11.40283 -11.28808 -11.20090 -11.18065 -11.13317 -10.66368 -10.50929 -10.43390 -9.60092 -8.46994 -7.76521 -5.36760 1.43691 1.46904 1.56161 1.66042 2.04465 2.55370 3.35398 3.47201 3.56190 3.65445 3.79298 3.80922 4.02462 4.08989 4.14963 4.20938 4.24024 4.28375 4.33644 4.38391 4.42439 4.47290 4.50117 4.53013 4.58554 4.67682 4.71805 4.80576 4.91860 4.92765 4.96763 4.98113 5.00539 5.03300 5.10703 5.11713 5.16750 5.24297 5.27575 5.33778 5.39684 5.43085 5.46951 5.48577 5.57319 5.59016 5.62656 5.64105 5.72191 5.80059 6.52608 6.55447 7.18813 7.23683 7.26173 7.91517 8.43364 9.21993 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.003130 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.298731 B = 8942.622462 C = 9517.615319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.038 4.038 3 Si 0.952 3.048 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.272 1.272 7 C -0.228 4.228 8 H 0.053 0.947 9 N -0.582 5.582 10 C 0.140 3.860 11 C 0.073 3.927 12 O -0.573 6.573 13 C 0.169 3.831 14 H 0.047 0.953 15 C -0.115 4.115 16 C -0.120 4.120 17 C 0.101 3.899 18 N -0.605 5.605 19 C 0.501 3.499 20 O -0.599 6.599 21 C -0.086 4.086 22 C -0.105 4.105 23 C -0.109 4.109 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.109 4.109 27 C -0.106 4.106 28 C 0.124 3.876 29 H 0.245 0.755 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.376 0.624 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.075 0.925 52 H 0.065 0.935 53 H 0.059 0.941 54 H 0.045 0.955 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.354 -22.642 -5.002 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.234 4.234 3 Si 0.781 3.219 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.197 1.197 7 C -0.358 4.358 8 H 0.071 0.929 9 N -0.302 5.302 10 C 0.014 3.986 11 C -0.007 4.007 12 O -0.378 6.378 13 C 0.061 3.939 14 H 0.066 0.934 15 C -0.154 4.154 16 C -0.159 4.159 17 C -0.021 4.021 18 N -0.338 5.338 19 C 0.291 3.709 20 O -0.481 6.481 21 C -0.107 4.107 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.147 4.147 27 C -0.144 4.144 28 C 0.000 4.000 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.222 0.778 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.135 0.865 40 H 0.089 0.911 41 H 0.132 0.868 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.093 0.907 50 H 0.092 0.908 51 H 0.094 0.906 52 H 0.084 0.916 53 H 0.077 0.923 54 H 0.063 0.937 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.440 -21.991 -5.632 24.219 hybrid contribution -0.317 1.673 0.662 1.827 sum 8.123 -20.318 -4.971 22.439 Atomic orbital electron populations 1.70115 1.06786 1.25418 1.54843 1.25757 0.95542 1.01268 1.00811 0.85529 0.78538 0.80722 0.77086 1.21509 1.22442 1.19711 1.18889 0.92389 0.85723 1.38830 0.92895 1.43844 1.49275 1.04262 1.32798 1.20926 0.90492 1.01313 0.85893 1.22786 0.90400 0.90327 0.97160 1.86763 1.54010 1.49529 1.47489 1.20764 0.95589 0.88100 0.89408 0.93445 1.21797 0.96024 0.97278 1.00286 1.21813 1.03308 0.96651 0.94092 1.22029 0.80222 1.01616 0.98199 1.48379 1.12020 1.25920 1.47432 1.21718 0.84106 0.87059 0.78045 1.90653 1.23784 1.71078 1.62536 1.21197 1.02606 0.90207 0.96713 1.21812 0.99062 0.97979 0.95488 1.21294 0.98636 0.93516 1.01249 1.21386 0.96281 1.00081 0.97815 1.20508 1.02314 0.98328 0.94431 1.20465 0.97335 0.97039 0.99818 1.21304 1.00996 0.95334 0.96730 1.21766 0.98511 0.85700 0.94069 0.94544 0.91808 0.94833 0.93681 0.94190 0.77787 0.93402 0.92480 0.87711 0.91105 0.86489 0.91127 0.86841 0.93567 0.92573 0.91623 0.92098 0.91355 0.90781 0.92400 0.90749 0.90754 0.90611 0.91643 0.92252 0.93711 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 11.45 21.65 0.25 -56.48 16 2 C -0.04 -2.18 4.96 84.86 0.42 -1.76 16 3 Si 0.95 47.15 29.59 68.60 2.03 49.18 16 4 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 5 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 6 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.23 -12.46 7.89 84.03 0.66 -11.80 16 8 H 0.05 2.90 6.88 -2.91 -0.02 2.88 16 9 N -0.58 -28.73 2.32 -677.59 -1.57 -30.30 16 10 C 0.14 6.77 5.56 86.38 0.48 7.25 16 11 C 0.07 2.79 7.39 71.98 0.53 3.32 16 12 O -0.57 -23.12 13.39 -148.98 -1.99 -25.12 16 13 C 0.17 6.96 2.79 45.07 0.13 7.08 16 14 H 0.05 1.93 7.87 -2.39 -0.02 1.91 16 15 C -0.11 -3.75 5.11 30.62 0.16 -3.60 16 16 C -0.12 -2.63 6.07 30.53 0.19 -2.44 16 17 C 0.10 2.26 6.17 86.22 0.53 2.79 16 18 N -0.61 -20.09 2.98 -819.74 -2.44 -22.53 16 19 C 0.50 17.07 6.50 87.66 0.57 17.64 16 20 O -0.60 -27.06 15.06 -3.02 -0.05 -27.11 16 21 C -0.09 -1.91 1.26 -12.00 -0.02 -1.93 16 22 C -0.11 -2.40 5.04 31.32 0.16 -2.24 16 23 C -0.11 -1.73 5.31 30.13 0.16 -1.57 16 24 C -0.12 -1.36 5.61 30.19 0.17 -1.19 16 25 C -0.12 -1.22 5.26 28.74 0.15 -1.07 16 26 C -0.11 -1.23 5.21 28.74 0.15 -1.08 16 27 C -0.11 -1.94 4.66 30.20 0.14 -1.80 16 28 C 0.12 5.46 5.75 86.36 0.50 5.96 16 29 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.06 3.64 5.56 -2.38 -0.01 3.62 16 31 H 0.03 1.58 8.04 -2.39 -0.02 1.56 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.38 10.48 9.12 -74.06 -0.68 9.81 16 35 H 0.05 1.74 7.05 -2.38 -0.02 1.73 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 37 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.12 1.77 4.48 -2.39 -0.01 1.76 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.11 1.92 4.92 -2.38 -0.01 1.91 16 42 H 0.05 1.35 7.10 -2.39 -0.02 1.34 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.06 0.98 6.63 -2.38 -0.02 0.96 16 46 H 0.07 0.77 6.98 -2.39 -0.02 0.76 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.06 0.65 7.47 -2.39 -0.02 0.63 16 49 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.08 0.68 6.78 -2.39 -0.02 0.66 16 52 H 0.06 1.30 6.98 -2.39 -0.02 1.29 16 53 H 0.06 1.23 7.71 -2.39 -0.02 1.21 16 54 H 0.04 2.19 7.50 -2.39 -0.02 2.17 16 55 H 0.04 1.95 7.04 -2.39 -0.02 1.94 16 Total: -1.00 -76.58 402.62 1.50 -75.08 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.20 Total: 23.69 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 5.08 Total: 13.58 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -3.77 Total: -109.31 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -2.04 Total: -52.23 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -76.58 1.50 -75.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566031844.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.896 kcal (2) G-P(sol) polarization free energy of solvation -76.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds