Wall clock time and date at job start Tue Mar 31 2020 21:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 110.01382 * 2 1 4 4 C 1.54267 * 110.02842 * 121.38838 * 2 1 3 5 5 C 1.54883 * 104.19781 * 95.67815 * 4 2 1 6 6 C 1.54896 * 102.75102 * 37.93735 * 5 4 2 7 7 H 1.08999 * 110.48240 * 80.86880 * 6 5 4 8 8 C 1.50696 * 110.48655 * 203.38006 * 6 5 4 9 9 O 1.21289 * 119.99568 * 91.05206 * 8 6 5 10 10 N 1.34777 * 120.00397 * 270.77394 * 8 6 5 11 11 C 1.46928 * 120.62451 * 4.70318 * 10 8 6 12 12 C 1.53625 * 108.53700 * 126.37302 * 11 10 8 13 13 C 1.53040 * 109.24488 * 54.85629 * 12 11 10 14 14 C 1.53038 * 109.53582 * 298.50824 * 13 12 11 15 15 H 1.09000 * 109.50332 * 301.41252 * 14 13 12 16 16 N 1.46498 * 109.49659 * 181.31605 * 14 13 12 17 17 C 1.36937 * 120.00233 * 300.16145 * 16 14 13 18 18 H 1.08003 * 119.99827 * 325.27617 * 17 16 14 19 19 C 1.38812 * 119.99959 * 145.27385 * 17 16 14 20 20 N 1.31620 * 119.99714 * 156.70395 * 19 17 16 21 21 Si 1.86799 * 120.00123 * 336.70143 * 19 17 16 22 22 H 1.48494 * 109.47014 * 92.19911 * 21 19 17 23 23 H 1.48497 * 109.47172 * 212.20218 * 21 19 17 24 24 H 1.48496 * 109.46997 * 332.19867 * 21 19 17 25 25 C 1.46501 * 120.00227 * 120.16599 * 16 14 13 26 26 C 1.52995 * 109.47269 * 83.63559 * 25 16 14 27 27 O 1.42896 * 109.47435 * 66.28158 * 26 25 16 28 28 C 1.46922 * 120.63348 * 184.98857 * 10 8 6 29 29 C 1.54085 * 110.11226 * 238.63088 * 2 1 3 30 30 H 1.09001 * 109.47255 * 300.06298 * 1 2 3 31 31 H 1.09003 * 109.46884 * 60.06927 * 1 2 3 32 32 H 1.09004 * 109.46845 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46859 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46745 * 299.93056 * 3 2 1 35 35 H 1.08994 * 109.47591 * 59.93218 * 3 2 1 36 36 H 1.09002 * 110.49083 * 336.99527 * 4 2 1 37 37 H 1.09008 * 110.48505 * 214.35316 * 4 2 1 38 38 H 1.09004 * 110.75743 * 279.62609 * 5 4 2 39 39 H 1.08998 * 110.76208 * 156.25351 * 5 4 2 40 40 H 1.08993 * 109.58833 * 246.20138 * 11 10 8 41 41 H 1.09002 * 109.58862 * 6.63485 * 11 10 8 42 42 H 1.09011 * 109.63529 * 294.86215 * 12 11 10 43 43 H 1.09000 * 109.43389 * 174.72524 * 12 11 10 44 44 H 1.09000 * 109.45664 * 178.49137 * 13 12 11 45 45 H 1.08996 * 109.45863 * 58.52748 * 13 12 11 46 46 H 0.97002 * 119.99636 * 179.97438 * 20 19 17 47 47 H 1.08996 * 109.47361 * 203.64200 * 25 16 14 48 48 H 1.09008 * 109.46807 * 323.63887 * 25 16 14 49 49 H 1.09005 * 109.47110 * 186.28276 * 26 25 16 50 50 H 1.09009 * 109.47272 * 306.27958 * 26 25 16 51 51 H 0.96697 * 114.00438 * 179.97438 * 27 26 25 52 52 H 1.09000 * 109.58592 * 353.37431 * 28 10 8 53 53 H 1.09002 * 109.58701 * 113.79664 * 28 10 8 54 54 H 1.08998 * 110.15921 * 121.53949 * 29 2 1 55 55 H 1.08996 * 110.00886 * 0.03586 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0584 -0.7549 1.2373 5 6 2.3281 -2.1898 0.7203 6 6 2.8876 -1.9410 -0.7025 7 1 3.9446 -1.6793 -0.6563 8 6 2.6839 -3.1568 -1.5693 9 8 1.6759 -3.2648 -2.2352 10 7 3.6243 -4.1215 -1.6089 11 6 4.8044 -4.0526 -0.7364 12 6 4.9090 -5.3690 0.0486 13 6 4.9217 -6.5424 -0.9338 14 6 3.6140 -6.5586 -1.7286 15 1 2.7718 -6.6432 -1.0419 16 7 3.6138 -7.7004 -2.6464 17 6 4.5869 -7.8097 -3.6037 18 1 4.9817 -6.9223 -4.0761 19 6 5.0659 -9.0609 -3.9668 20 7 5.6263 -9.2344 -5.1451 21 14 4.9152 -10.4983 -2.7834 22 1 3.6515 -11.2303 -3.0521 23 1 6.0679 -11.4157 -2.9696 24 1 4.9065 -9.9915 -1.3876 25 6 2.5725 -8.7255 -2.5402 26 6 1.3253 -8.2659 -3.2978 27 8 1.6140 -8.2008 -4.6957 28 6 3.4920 -5.2586 -2.5298 29 6 2.0599 -0.7532 -1.2354 30 1 -0.3634 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8906 32 1 -0.3633 -1.0277 0.0005 33 1 3.1437 1.4272 0.0005 34 1 1.6962 1.9544 -0.8906 35 1 1.6943 1.9552 0.8893 36 1 1.3061 -0.7686 2.0259 37 1 2.9811 -0.2993 1.5969 38 1 1.4031 -2.7648 0.6765 39 1 3.0676 -2.6924 1.3437 40 1 5.6995 -3.9134 -1.3426 41 1 4.6974 -3.2191 -0.0421 42 1 4.0545 -5.4647 0.7187 43 1 5.8305 -5.3719 0.6307 44 1 5.0228 -7.4769 -0.3818 45 1 5.7620 -6.4329 -1.6193 46 1 5.9613 -10.1087 -5.3987 47 1 2.9359 -9.6586 -2.9707 48 1 2.3229 -8.8825 -1.4908 49 1 0.5147 -8.9743 -3.1268 50 1 1.0269 -7.2796 -2.9421 51 1 0.8665 -7.9160 -5.2390 52 1 2.5188 -5.2210 -3.0193 53 1 4.2822 -5.2157 -3.2793 54 1 2.6917 -0.0964 -1.8334 55 1 1.2265 -1.1183 -1.8354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566034806.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:29 Heat of formation + Delta-G solvation = -96.925169 kcal Electronic energy + Delta-G solvation = -31980.420179 eV Core-core repulsion = 28016.399503 eV Total energy + Delta-G solvation = -3964.020676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.59254 -39.80315 -38.75337 -37.77454 -36.38843 -34.05145 -33.35360 -33.01166 -31.45333 -29.91271 -29.30554 -28.11581 -26.83358 -25.97033 -25.21492 -23.84125 -22.89964 -22.35398 -21.18141 -19.67749 -19.49319 -18.58701 -18.45279 -18.22933 -17.23418 -16.93792 -16.40522 -16.12703 -15.89546 -15.46586 -15.31895 -15.18318 -14.89085 -14.67015 -14.64028 -14.51334 -14.22626 -14.09871 -13.97319 -13.93107 -13.71838 -13.43460 -13.06005 -12.98199 -12.89459 -12.55324 -12.45869 -12.32371 -12.17860 -12.05966 -11.94245 -11.78342 -11.70943 -11.59513 -11.53017 -11.38410 -11.35979 -11.26585 -11.23591 -10.76018 -10.72109 -10.50448 -9.68852 -8.72722 -8.08543 -5.42641 1.31660 1.40851 1.51450 1.63089 2.01282 2.49098 3.06758 3.32135 3.44471 3.59645 3.63698 3.72890 3.94387 4.04759 4.10146 4.14228 4.22823 4.31613 4.32473 4.36690 4.40434 4.43417 4.48755 4.53639 4.56815 4.62526 4.64526 4.68939 4.71676 4.81141 4.86218 4.87337 4.93650 4.96552 5.00497 5.01536 5.06671 5.07395 5.15887 5.18341 5.19502 5.23673 5.36037 5.40355 5.43416 5.49266 5.54985 5.59212 5.62307 6.01435 6.24902 6.52357 6.99987 7.09962 7.21773 7.71386 8.09759 9.11930 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.003026 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.848527 B = 9250.813273 C = 9809.042087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 C -0.136 4.136 4 C -0.106 4.106 5 C -0.106 4.106 6 C -0.106 4.106 7 H 0.120 0.880 8 C 0.512 3.488 9 O -0.593 6.593 10 N -0.606 5.606 11 C 0.102 3.898 12 C -0.120 4.120 13 C -0.123 4.123 14 C 0.170 3.830 15 H 0.066 0.934 16 N -0.601 5.601 17 C -0.221 4.221 18 H 0.037 0.963 19 C -0.021 4.021 20 N -0.953 5.953 21 Si 0.938 3.062 22 H -0.283 1.283 23 H -0.315 1.315 24 H -0.251 1.251 25 C 0.117 3.883 26 C 0.063 3.937 27 O -0.576 6.576 28 C 0.120 3.880 29 C -0.108 4.108 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.121 0.879 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.053 0.947 45 H 0.047 0.953 46 H 0.257 0.743 47 H 0.046 0.954 48 H 0.081 0.919 49 H 0.058 0.942 50 H 0.036 0.964 51 H 0.377 0.623 52 H 0.053 0.947 53 H 0.042 0.958 54 H 0.070 0.930 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.377 18.525 18.846 27.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 C -0.193 4.193 4 C -0.143 4.143 5 C -0.144 4.144 6 C -0.127 4.127 7 H 0.138 0.862 8 C 0.302 3.698 9 O -0.474 6.474 10 N -0.338 5.338 11 C -0.020 4.020 12 C -0.159 4.159 13 C -0.162 4.162 14 C 0.064 3.936 15 H 0.084 0.916 16 N -0.322 5.322 17 C -0.351 4.351 18 H 0.054 0.946 19 C -0.216 4.216 20 N -0.598 5.598 21 Si 0.768 3.232 22 H -0.211 1.211 23 H -0.244 1.244 24 H -0.175 1.175 25 C -0.009 4.009 26 C -0.016 4.016 27 O -0.381 6.381 28 C -0.005 4.005 29 C -0.146 4.146 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.139 0.861 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.100 0.900 49 H 0.076 0.924 50 H 0.055 0.945 51 H 0.223 0.777 52 H 0.072 0.928 53 H 0.060 0.940 54 H 0.089 0.911 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.226 18.164 18.627 26.752 hybrid contribution -0.557 -1.227 -1.087 1.731 sum -6.783 16.937 17.540 25.309 Atomic orbital electron populations 1.21901 0.94760 1.01009 1.01861 1.21209 0.95376 0.95958 0.94234 1.21893 1.01278 0.94162 1.01964 1.22485 1.02160 0.93233 0.96434 1.22469 1.00913 0.98633 0.92387 1.22239 1.03208 0.91414 0.95815 0.86222 1.21362 0.81760 0.84744 0.81938 1.90635 1.30121 1.79901 1.46777 1.48316 1.23173 1.22588 1.39680 1.22177 0.86792 0.99830 0.93189 1.21968 1.03966 0.92693 0.97235 1.21867 0.97951 0.98644 0.97768 1.20738 0.97193 0.85738 0.89975 0.91574 1.44133 1.27200 1.24502 1.36415 1.18299 1.13233 0.92179 1.11385 0.94558 1.25870 0.98214 1.00197 0.97337 1.70038 1.45800 1.23687 1.20300 0.86000 0.75100 0.79998 0.82078 1.21109 1.24421 1.17473 1.21599 0.88683 0.92525 0.98043 1.22862 0.97689 0.98987 0.82112 1.86811 1.41611 1.91202 1.18445 1.21736 1.00407 0.86232 0.92159 1.22326 0.99211 0.95025 0.98059 0.91275 0.93328 0.94105 0.91725 0.93207 0.91570 0.90458 0.89190 0.93008 0.88630 0.91252 0.86099 0.90678 0.88083 0.92819 0.93381 0.93461 0.93644 0.90048 0.92370 0.94525 0.77695 0.92804 0.93975 0.91083 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.15 71.99 0.59 -1.64 16 2 C -0.07 -1.00 0.94 -51.38 -0.05 -1.05 16 3 C -0.14 -1.55 8.16 71.98 0.59 -0.96 16 4 C -0.11 -1.23 5.90 31.67 0.19 -1.04 16 5 C -0.11 -1.63 6.17 31.89 0.20 -1.43 16 6 C -0.11 -2.08 2.25 -10.46 -0.02 -2.10 16 7 H 0.12 1.73 6.69 -2.39 -0.02 1.72 16 8 C 0.51 15.49 6.86 87.66 0.60 16.09 16 9 O -0.59 -23.64 15.01 -3.06 -0.05 -23.69 16 10 N -0.61 -18.14 2.97 -818.07 -2.43 -20.56 16 11 C 0.10 2.12 6.20 86.51 0.54 2.66 16 12 C -0.12 -2.58 6.10 30.82 0.19 -2.39 16 13 C -0.12 -4.08 5.11 30.62 0.16 -3.93 16 14 C 0.17 6.51 2.78 45.07 0.13 6.64 16 15 H 0.07 2.35 7.88 -2.39 -0.02 2.33 16 16 N -0.60 -27.96 2.04 -677.61 -1.38 -29.34 16 17 C -0.22 -12.53 8.58 84.03 0.72 -11.81 16 18 H 0.04 2.32 6.87 -2.91 -0.02 2.30 16 19 C -0.02 -1.26 5.27 84.86 0.45 -0.81 16 20 N -0.95 -61.67 13.97 21.65 0.30 -61.37 16 21 Si 0.94 46.95 25.11 68.60 1.72 48.68 16 22 H -0.28 -13.82 6.50 99.48 0.65 -13.17 16 23 H -0.31 -16.13 7.11 99.48 0.71 -15.43 16 24 H -0.25 -11.53 7.11 99.48 0.71 -10.82 16 25 C 0.12 5.00 4.61 86.38 0.40 5.40 16 26 C 0.06 2.44 7.37 71.98 0.53 2.97 16 27 O -0.58 -25.58 13.49 -148.98 -2.01 -27.60 16 28 C 0.12 4.71 5.77 86.36 0.50 5.21 16 29 C -0.11 -2.22 5.64 31.39 0.18 -2.04 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.81 7.84 -2.39 -0.02 0.79 16 37 H 0.09 0.73 7.85 -2.38 -0.02 0.71 16 38 H 0.05 1.03 8.05 -2.38 -0.02 1.02 16 39 H 0.10 1.04 7.60 -2.39 -0.02 1.03 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.12 1.57 5.12 -2.39 -0.01 1.56 16 42 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.05 1.85 7.70 -2.39 -0.02 1.83 16 46 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 47 H 0.05 2.20 3.20 -2.39 -0.01 2.19 16 48 H 0.08 2.92 8.06 -2.38 -0.02 2.90 16 49 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 50 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 51 H 0.38 12.52 9.12 -74.06 -0.68 11.85 16 52 H 0.05 2.43 7.00 -2.39 -0.02 2.41 16 53 H 0.04 1.91 6.79 -2.39 -0.02 1.90 16 54 H 0.07 1.34 7.68 -2.39 -0.02 1.32 16 55 H 0.05 1.48 6.32 -2.39 -0.02 1.46 16 Total: -1.00 -79.51 408.95 2.15 -77.36 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.13 Total: 26.75 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 5.87 Total: 9.77 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -3.51 Total: -111.27 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -2.06 Total: -51.29 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.72 Total: 48.68 kcal Total: -79.51 2.15 -77.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566034806.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.568 kcal (2) G-P(sol) polarization free energy of solvation -79.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds