Wall clock time and date at job start Tue Mar 31 2020 21:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.01495 * 2 1 4 4 C 1.53877 * 110.03095 * 121.38892 * 2 1 3 5 5 C 1.54272 * 106.59617 * 119.28694 * 4 2 1 6 6 C 1.54895 * 104.19470 * 336.38821 * 5 4 2 7 7 H 1.09005 * 110.75251 * 279.44175 * 6 5 4 8 8 C 1.50697 * 110.75227 * 156.26043 * 6 5 4 9 9 O 1.21286 * 120.00180 * 265.84416 * 8 6 5 10 10 N 1.34779 * 120.00457 * 85.85008 * 8 6 5 11 11 C 1.46930 * 120.62583 * 355.20758 * 10 8 6 12 12 C 1.53194 * 108.77491 * 126.37216 * 11 10 8 13 13 C 1.53039 * 109.31361 * 54.63096 * 12 11 10 14 14 C 1.53080 * 109.66175 * 298.70251 * 13 12 11 15 15 H 1.09007 * 109.38602 * 301.28086 * 14 13 12 16 16 N 1.46495 * 109.62425 * 181.16820 * 14 13 12 17 17 C 1.36939 * 120.00052 * 300.10719 * 16 14 13 18 18 H 1.07997 * 119.99726 * 318.73674 * 17 16 14 19 19 C 1.38816 * 119.99986 * 138.74048 * 17 16 14 20 20 N 1.31619 * 119.99690 * 341.20660 * 19 17 16 21 21 Si 1.86793 * 119.99912 * 161.20480 * 19 17 16 22 22 H 1.48501 * 109.47083 * 60.00225 * 21 19 17 23 23 H 1.48501 * 109.47102 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47320 * 300.00115 * 21 19 17 25 25 C 1.46506 * 119.99864 * 120.10496 * 16 14 13 26 26 C 1.52998 * 109.46748 * 84.53159 * 25 16 14 27 27 O 1.42904 * 109.47422 * 65.00191 * 26 25 16 28 28 C 1.46916 * 120.63192 * 175.18510 * 10 8 6 29 29 C 1.54267 * 110.03122 * 238.55588 * 2 1 3 30 30 H 1.09004 * 109.47127 * 300.05802 * 1 2 3 31 31 H 1.08994 * 109.47119 * 60.06386 * 1 2 3 32 32 H 1.09004 * 109.46857 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46537 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46748 * 299.93631 * 3 2 1 35 35 H 1.08994 * 109.47268 * 59.94201 * 3 2 1 36 36 H 1.08995 * 110.03741 * 0.02562 * 4 2 1 37 37 H 1.09001 * 110.03644 * 238.56618 * 4 2 1 38 38 H 1.09002 * 110.48669 * 217.71019 * 5 4 2 39 39 H 1.08995 * 110.60065 * 95.11848 * 5 4 2 40 40 H 1.08996 * 109.58499 * 246.15791 * 11 10 8 41 41 H 1.09000 * 109.58766 * 6.58667 * 11 10 8 42 42 H 1.08997 * 109.49737 * 174.58503 * 12 11 10 43 43 H 1.09004 * 109.49305 * 294.68394 * 12 11 10 44 44 H 1.08997 * 109.46074 * 58.65751 * 13 12 11 45 45 H 1.09000 * 109.46418 * 178.61676 * 13 12 11 46 46 H 0.96996 * 119.99920 * 180.02562 * 20 19 17 47 47 H 1.08997 * 109.47047 * 204.53220 * 25 16 14 48 48 H 1.09001 * 109.47088 * 324.53172 * 25 16 14 49 49 H 1.09001 * 109.46835 * 184.99997 * 26 25 16 50 50 H 1.09000 * 109.47302 * 304.99920 * 26 25 16 51 51 H 0.96695 * 113.99768 * 180.02562 * 27 26 25 52 52 H 1.08998 * 109.59116 * 353.42085 * 28 10 8 53 53 H 1.08999 * 109.58726 * 113.70258 * 28 10 8 54 54 H 1.09004 * 110.48138 * 145.64689 * 29 2 1 55 55 H 1.09000 * 110.48647 * 23.00759 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0571 -0.7530 1.2341 5 6 2.8875 -1.9403 0.7044 6 6 2.3281 -2.1905 -0.7181 7 1 1.4048 -2.7683 -0.6740 8 6 3.3505 -2.8863 -1.5793 9 8 4.0846 -2.2368 -2.2937 10 7 3.4491 -4.2302 -1.5558 11 6 2.6405 -5.0238 -0.6202 12 6 1.8736 -6.0881 -1.4115 13 6 2.8612 -6.9103 -2.2426 14 6 3.5836 -5.9969 -3.2362 15 1 2.8507 -5.5142 -3.8829 16 7 4.5084 -6.7894 -4.0504 17 6 5.5201 -7.4907 -3.4505 18 1 6.0779 -7.0466 -2.6394 19 6 5.8287 -8.7725 -3.8851 20 7 4.9534 -9.4565 -4.5910 21 14 7.4861 -9.5263 -3.4681 22 1 7.6387 -9.6012 -1.9929 23 1 7.5672 -10.8928 -4.0436 24 1 8.5697 -8.6844 -4.0357 25 6 4.3508 -6.8316 -5.5063 26 6 5.0521 -5.6234 -6.1303 27 8 6.4592 -5.7175 -5.8995 28 6 4.3667 -4.9295 -2.4654 29 6 2.0584 -0.7561 -1.2365 30 1 -0.3633 0.5148 0.8895 31 1 -0.3633 0.5128 -0.8905 32 1 -0.3633 -1.0277 0.0005 33 1 3.1436 1.4271 0.0005 34 1 1.6962 1.9545 -0.8906 35 1 1.6944 1.9552 0.8894 36 1 1.2230 -1.1188 1.8328 37 1 2.6868 -0.0946 1.8326 38 1 2.7402 -2.8191 1.3323 39 1 3.9446 -1.6786 0.6580 40 1 3.2927 -5.5081 0.1065 41 1 1.9347 -4.3729 -0.1042 42 1 1.3449 -6.7445 -0.7204 43 1 1.1566 -5.6027 -2.0737 44 1 3.5928 -7.3754 -1.5820 45 1 2.3209 -7.6842 -2.7878 46 1 5.1688 -10.3523 -4.8943 47 1 4.7943 -7.7490 -5.8933 48 1 3.2906 -6.8063 -5.7579 49 1 4.8603 -5.6061 -7.2032 50 1 4.6701 -4.7080 -5.6782 51 1 6.9682 -4.9827 -6.2682 52 1 4.8000 -4.2164 -3.1667 53 1 5.1611 -5.4040 -1.8893 54 1 2.9811 -0.3008 -1.5965 55 1 1.3061 -0.7705 -2.0251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566034807.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:34 Heat of formation + Delta-G solvation = -104.230118 kcal Electronic energy + Delta-G solvation = -31844.826283 eV Core-core repulsion = 27880.488840 eV Total energy + Delta-G solvation = -3964.337443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.55538 -39.72568 -38.66148 -37.70576 -36.28335 -33.98293 -33.13771 -32.91647 -31.23997 -29.89929 -29.05872 -28.09368 -26.82092 -25.97915 -25.23911 -23.62785 -22.88275 -22.13132 -21.13377 -19.67581 -19.61001 -18.41588 -18.27145 -18.16188 -17.03649 -16.69931 -16.34433 -16.12172 -15.81240 -15.48344 -15.35479 -15.17283 -14.69050 -14.62524 -14.47540 -14.45172 -14.17598 -14.10001 -13.91071 -13.74638 -13.57543 -13.14134 -12.93078 -12.85172 -12.71804 -12.57967 -12.52392 -12.35841 -12.29950 -12.03218 -11.96355 -11.73647 -11.66827 -11.59500 -11.55844 -11.39170 -11.34689 -11.25644 -11.24197 -10.76740 -10.63637 -10.44572 -9.63719 -8.42897 -7.77444 -5.39599 1.43549 1.48264 1.54618 1.63792 2.04404 2.55082 3.33394 3.42682 3.53190 3.58709 3.73665 3.74935 3.96786 4.10240 4.12554 4.19454 4.30076 4.33685 4.36214 4.39865 4.45757 4.48798 4.53735 4.63963 4.64600 4.65275 4.66599 4.80745 4.85193 4.87579 4.89996 4.91156 4.97725 5.01207 5.03431 5.07171 5.10391 5.16550 5.18245 5.23111 5.27364 5.36497 5.43755 5.47421 5.49942 5.57127 5.63278 5.64686 5.68950 5.78198 6.53538 6.54767 7.10973 7.22113 7.24962 7.89467 8.44091 9.20503 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.002934 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.755206 B = 9541.714958 C = 9978.337349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.108 4.108 6 C -0.106 4.106 7 H 0.123 0.877 8 C 0.512 3.488 9 O -0.595 6.595 10 N -0.605 5.605 11 C 0.105 3.895 12 C -0.123 4.123 13 C -0.111 4.111 14 C 0.169 3.831 15 H 0.048 0.952 16 N -0.582 5.582 17 C -0.234 4.234 18 H 0.041 0.959 19 C -0.024 4.024 20 N -0.918 5.918 21 Si 0.946 3.054 22 H -0.275 1.275 23 H -0.293 1.293 24 H -0.290 1.290 25 C 0.148 3.852 26 C 0.067 3.933 27 O -0.574 6.574 28 C 0.122 3.878 29 C -0.100 4.100 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.039 0.961 46 H 0.248 0.752 47 H 0.062 0.938 48 H 0.045 0.955 49 H 0.049 0.951 50 H 0.026 0.974 51 H 0.374 0.626 52 H 0.052 0.948 53 H 0.046 0.954 54 H 0.054 0.946 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.451 16.892 11.641 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.068 4.068 3 C -0.196 4.196 4 C -0.145 4.145 5 C -0.146 4.146 6 C -0.127 4.127 7 H 0.141 0.859 8 C 0.302 3.698 9 O -0.476 6.476 10 N -0.337 5.337 11 C -0.016 4.016 12 C -0.162 4.162 13 C -0.150 4.150 14 C 0.061 3.939 15 H 0.066 0.934 16 N -0.302 5.302 17 C -0.365 4.365 18 H 0.059 0.941 19 C -0.221 4.221 20 N -0.562 5.562 21 Si 0.775 3.225 22 H -0.201 1.201 23 H -0.219 1.219 24 H -0.216 1.216 25 C 0.022 3.978 26 C -0.013 4.013 27 O -0.379 6.379 28 C -0.003 4.003 29 C -0.138 4.138 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.138 0.862 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.044 0.956 51 H 0.221 0.779 52 H 0.071 0.929 53 H 0.065 0.935 54 H 0.072 0.928 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.256 16.482 11.508 23.543 hybrid contribution 1.695 -0.375 -0.931 1.970 sum -10.561 16.106 10.577 21.973 Atomic orbital electron populations 1.21906 0.92918 1.02377 1.02110 1.21177 0.96504 0.95185 0.93892 1.21907 1.00299 0.95284 1.02131 1.22274 0.99757 0.95733 0.96753 1.22335 0.99166 1.00255 0.92834 1.22357 0.97492 0.97178 0.95663 0.85889 1.21332 0.84488 0.81588 0.82376 1.90636 1.46661 1.65722 1.44575 1.48324 1.41796 1.05882 1.37675 1.22057 0.94590 0.93915 0.91056 1.21917 0.97438 0.97500 0.99299 1.21736 0.97680 0.97814 0.97819 1.20694 0.90336 0.90862 0.91964 0.93402 1.43730 1.31859 1.53946 1.00641 1.18709 1.07985 0.93604 1.16221 0.94134 1.25682 0.99785 0.96207 1.00466 1.70087 1.34005 1.10568 1.41520 0.85704 0.82019 0.76798 0.77991 1.20068 1.21904 1.21632 1.20874 0.95873 0.96750 0.84347 1.22908 0.81730 0.99029 0.97647 1.86741 1.19046 1.50217 1.81848 1.21749 0.92270 0.94025 0.92291 1.22395 1.00778 0.92763 0.97819 0.91472 0.92943 0.91860 0.93715 0.92907 0.91271 0.89285 0.91094 0.89005 0.93341 0.90947 0.86183 0.88435 0.91276 0.93684 0.94227 0.94278 0.92003 0.93681 0.93270 0.95572 0.77935 0.92948 0.93546 0.92763 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.14 71.98 0.59 -0.93 16 2 C -0.07 -0.98 0.94 -51.45 -0.05 -1.03 16 3 C -0.14 -2.01 8.16 71.98 0.59 -1.42 16 4 C -0.11 -1.37 6.11 31.32 0.19 -1.18 16 5 C -0.11 -1.81 6.14 31.67 0.19 -1.62 16 6 C -0.11 -2.17 2.25 -10.25 -0.02 -2.19 16 7 H 0.12 1.88 6.69 -2.38 -0.02 1.86 16 8 C 0.51 15.99 6.91 87.66 0.61 16.60 16 9 O -0.59 -24.21 15.18 -3.05 -0.05 -24.25 16 10 N -0.60 -18.85 2.97 -818.92 -2.44 -21.28 16 11 C 0.11 2.37 6.30 86.36 0.54 2.91 16 12 C -0.12 -3.04 6.08 30.67 0.19 -2.85 16 13 C -0.11 -4.15 5.12 30.63 0.16 -3.99 16 14 C 0.17 7.03 2.79 45.08 0.13 7.16 16 15 H 0.05 1.96 7.87 -2.38 -0.02 1.94 16 16 N -0.58 -28.85 2.30 -677.51 -1.56 -30.41 16 17 C -0.23 -12.92 7.96 84.03 0.67 -12.25 16 18 H 0.04 2.31 6.78 -2.91 -0.02 2.29 16 19 C -0.02 -1.37 4.93 84.86 0.42 -0.95 16 20 N -0.92 -53.79 11.67 21.65 0.25 -53.54 16 21 Si 0.95 46.55 29.59 68.60 2.03 48.58 16 22 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 24 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 25 C 0.15 7.11 5.55 86.38 0.48 7.59 16 26 C 0.07 2.74 7.39 71.98 0.53 3.28 16 27 O -0.57 -25.18 13.39 -148.98 -2.00 -27.17 16 28 C 0.12 4.90 5.75 86.37 0.50 5.40 16 29 C -0.10 -2.07 5.16 31.67 0.16 -1.91 16 30 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.80 7.67 -2.39 -0.02 0.78 16 37 H 0.07 0.88 7.67 -2.39 -0.02 0.86 16 38 H 0.09 1.18 7.76 -2.39 -0.02 1.16 16 39 H 0.05 1.04 8.04 -2.39 -0.02 1.02 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.12 1.74 5.13 -2.39 -0.01 1.73 16 42 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.04 1.88 7.70 -2.39 -0.02 1.86 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 47 H 0.06 3.44 5.79 -2.39 -0.01 3.43 16 48 H 0.04 2.02 8.04 -2.39 -0.02 2.00 16 49 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.37 12.14 9.12 -74.06 -0.68 11.46 16 52 H 0.05 2.40 7.03 -2.39 -0.02 2.38 16 53 H 0.05 2.06 6.82 -2.39 -0.02 2.05 16 54 H 0.05 1.46 6.95 -2.38 -0.02 1.45 16 55 H 0.07 1.36 7.84 -2.39 -0.02 1.34 16 Total: -1.00 -72.90 415.03 2.29 -70.60 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.18 Total: 24.87 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 5.87 Total: 12.61 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -3.74 Total: -105.23 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -2.04 Total: -51.43 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -72.90 2.29 -70.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566034807.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.626 kcal (2) G-P(sol) polarization free energy of solvation -72.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds