Wall clock time and date at job start Tue Mar 31 2020 21:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 115.55902 * 2 1 4 4 C 1.52999 * 117.50287 * 145.68800 * 2 1 3 5 5 C 1.50699 * 117.50046 * 214.97871 * 4 2 1 6 6 O 1.21283 * 119.99913 * 254.86485 * 5 4 2 7 7 N 1.34772 * 119.99686 * 74.86882 * 5 4 2 8 8 C 1.46934 * 120.62812 * 180.02562 * 7 5 4 9 9 C 1.53198 * 108.89170 * 126.34270 * 8 7 5 10 10 C 1.53350 * 109.14926 * 54.57963 * 9 8 7 11 11 N 1.46495 * 109.41544 * 178.67559 * 10 9 8 12 12 C 1.36941 * 120.00414 * 60.12462 * 11 10 9 13 13 H 1.08004 * 119.99489 * 324.11196 * 12 11 10 14 14 C 1.38807 * 120.00405 * 144.11187 * 12 11 10 15 15 N 1.31618 * 119.99972 * 338.28193 * 14 12 11 16 16 Si 1.86802 * 120.00218 * 158.27751 * 14 12 11 17 17 H 1.48501 * 109.47070 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46839 * 120.00171 * 16 14 12 19 19 H 1.48497 * 109.47450 * 240.00496 * 16 14 12 20 20 C 1.46498 * 119.99867 * 240.12469 * 11 10 9 21 21 C 1.52998 * 109.47267 * 92.14949 * 20 11 10 22 22 O 1.42896 * 109.47666 * 64.99951 * 21 20 11 23 23 C 1.53047 * 109.60364 * 298.70739 * 10 9 8 24 24 C 1.46922 * 120.63425 * 0.02562 * 7 5 4 25 25 C 1.53000 * 117.50187 * 214.31454 * 2 1 3 26 26 C 1.53001 * 117.50017 * 145.01498 * 25 2 1 27 27 C 1.53001 * 117.49597 * 359.97438 * 25 2 1 28 28 H 1.08993 * 109.47020 * 325.69774 * 1 2 3 29 29 H 1.08998 * 109.46952 * 85.70168 * 1 2 3 30 30 H 1.08999 * 109.46666 * 205.70475 * 1 2 3 31 31 H 1.08996 * 109.46998 * 197.65023 * 3 2 1 32 32 H 1.09001 * 109.46904 * 317.64876 * 3 2 1 33 33 H 1.08999 * 109.47184 * 77.65062 * 3 2 1 34 34 H 1.08995 * 117.49762 * 359.97438 * 4 2 1 35 35 H 1.09002 * 109.58146 * 246.19837 * 8 7 5 36 36 H 1.08994 * 109.58352 * 6.48172 * 8 7 5 37 37 H 1.08997 * 109.49381 * 174.65602 * 9 8 7 38 38 H 1.08993 * 109.49420 * 294.75158 * 9 8 7 39 39 H 1.08995 * 109.42688 * 58.74957 * 10 9 8 40 40 H 0.97005 * 120.00420 * 179.97438 * 15 14 12 41 41 H 1.09000 * 109.47357 * 212.14449 * 20 11 10 42 42 H 1.09005 * 109.47019 * 332.14741 * 20 11 10 43 43 H 1.09000 * 109.46808 * 185.00327 * 21 20 11 44 44 H 1.09003 * 109.46627 * 304.99634 * 21 20 11 45 45 H 0.96689 * 114.00261 * 180.02562 * 22 21 20 46 46 H 1.09000 * 109.49783 * 301.42304 * 23 10 9 47 47 H 1.08998 * 109.51891 * 181.34542 * 23 10 9 48 48 H 1.08997 * 109.58495 * 353.37134 * 24 7 5 49 49 H 1.08998 * 109.59356 * 113.65495 * 24 7 5 50 50 H 1.09005 * 109.46878 * 180.02562 * 26 25 2 51 51 H 1.08991 * 109.47309 * 300.01532 * 26 25 2 52 52 H 1.09003 * 109.46823 * 60.01680 * 26 25 2 53 53 H 1.08999 * 109.47149 * 299.98557 * 27 25 2 54 54 H 1.08996 * 109.47014 * 59.98788 * 27 25 2 55 55 H 1.09003 * 109.47332 * 179.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2366 -1.1209 0.7650 5 6 3.5294 -0.7810 1.4608 6 8 4.5855 -1.1495 0.9919 7 7 3.5119 -0.0676 2.6040 8 6 4.7642 0.2721 3.2936 9 6 4.8116 1.7868 3.5183 10 6 3.5431 2.2252 4.2602 11 7 3.5970 3.6683 4.5062 12 6 3.6807 4.5398 3.4532 13 1 4.2555 4.2754 2.5779 14 6 3.0269 5.7629 3.5108 15 7 2.0113 5.9281 4.3315 16 14 3.5884 7.1744 2.4237 17 1 4.7413 6.7345 1.5976 18 1 2.4729 7.5888 1.5352 19 1 3.9969 8.3216 3.2735 20 6 3.5615 4.1792 5.8788 21 6 4.9909 4.3435 6.3990 22 8 5.6620 5.3500 5.6384 23 6 2.3126 1.8984 3.4109 24 6 2.2405 0.3853 3.1845 25 6 2.2365 -1.1209 -0.7650 26 6 3.5490 -0.7757 -1.4716 27 6 1.3589 -2.1564 -1.4711 28 1 -0.3633 0.8489 0.5791 29 1 -0.3633 0.0770 -1.0248 30 1 -0.3632 -0.9260 0.4457 31 1 3.2303 1.2856 -0.3116 32 1 1.6617 2.0357 -0.6923 33 1 2.1486 1.8029 1.0039 34 1 1.6114 -1.8581 1.2686 35 1 4.8030 -0.2413 4.2544 36 1 5.6127 -0.0333 2.6815 37 1 5.6900 2.0390 4.1123 38 1 4.8641 2.2958 2.5560 39 1 3.4785 1.6968 5.2114 40 1 1.5545 6.7830 4.3721 41 1 3.0561 5.1449 5.8941 42 1 3.0221 3.4767 6.5141 43 1 4.9640 4.6384 7.4481 44 1 5.5241 3.3979 6.3010 45 1 6.5754 5.5073 5.9136 46 1 2.3886 2.4067 2.4497 47 1 1.4135 2.2321 3.9288 48 1 1.4242 0.1570 2.4994 49 1 2.0720 -0.1206 4.1351 50 1 3.9365 -1.6632 -1.9720 51 1 3.3702 0.0075 -2.2080 52 1 4.2754 -0.4257 -0.7380 53 1 0.7302 -2.6607 -0.7373 54 1 0.7291 -1.6573 -2.2075 55 1 1.9923 -2.8888 -1.9716 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566132487.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:00 Heat of formation + Delta-G solvation = -57.426922 kcal Electronic energy + Delta-G solvation = -32740.205397 eV Core-core repulsion = 28777.897493 eV Total energy + Delta-G solvation = -3962.307904 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.92098 -39.69446 -38.60936 -37.61422 -36.18466 -33.75884 -32.39722 -31.99432 -31.71970 -29.57808 -29.57177 -28.87696 -27.10826 -26.48529 -24.97595 -24.11973 -23.09024 -22.00849 -21.12500 -19.62989 -18.80988 -18.26126 -18.15975 -17.72581 -16.78239 -16.75161 -16.52410 -16.05220 -15.80631 -15.55347 -15.35290 -15.04950 -14.89547 -14.54576 -14.45145 -14.04252 -13.95455 -13.73850 -13.55552 -13.36966 -13.25568 -13.19506 -13.10960 -13.02803 -12.95778 -12.85881 -12.71069 -12.69646 -12.57712 -12.54600 -12.29481 -12.01012 -11.75774 -11.65643 -11.56299 -11.47659 -11.08288 -10.80617 -10.60182 -10.57836 -10.35832 -10.13394 -9.53901 -8.43206 -7.68282 -5.24849 1.42705 1.48286 1.54795 1.60056 2.03796 2.58657 2.64092 3.41088 3.48167 3.58713 3.63764 3.68024 3.86702 3.95777 4.06106 4.15688 4.19653 4.26069 4.30877 4.41012 4.46689 4.59016 4.59733 4.65255 4.69595 4.74519 4.78105 4.81024 4.83645 4.87442 4.91648 4.94963 4.96030 5.02102 5.02639 5.08243 5.10877 5.13560 5.16253 5.19000 5.20284 5.24516 5.34804 5.43728 5.50086 5.58684 5.70226 5.78082 5.79750 5.93345 6.49925 6.59023 7.22748 7.23120 7.33076 8.02999 8.49923 9.26786 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.003865 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.559295 B = 7243.038721 C = 8083.501943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.135 4.135 4 C -0.179 4.179 5 C 0.542 3.458 6 O -0.578 6.578 7 N -0.599 5.599 8 C 0.120 3.880 9 C -0.123 4.123 10 C 0.173 3.827 11 N -0.583 5.583 12 C -0.210 4.210 13 H 0.036 0.964 14 C -0.023 4.023 15 N -0.915 5.915 16 Si 0.933 3.067 17 H -0.282 1.282 18 H -0.296 1.296 19 H -0.298 1.298 20 C 0.132 3.868 21 C 0.069 3.931 22 O -0.574 6.574 23 C -0.128 4.128 24 C 0.117 3.883 25 C -0.090 4.090 26 C -0.129 4.129 27 C -0.108 4.108 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.149 0.851 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.066 0.934 40 H 0.244 0.756 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.036 0.964 45 H 0.371 0.629 46 H 0.051 0.949 47 H 0.058 0.942 48 H 0.098 0.902 49 H 0.086 0.914 50 H 0.060 0.940 51 H 0.054 0.946 52 H 0.057 0.943 53 H 0.072 0.928 54 H 0.073 0.927 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 -15.943 -2.890 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.192 4.192 4 C -0.200 4.200 5 C 0.332 3.668 6 O -0.459 6.459 7 N -0.330 5.330 8 C -0.003 4.003 9 C -0.163 4.163 10 C 0.066 3.934 11 N -0.303 5.303 12 C -0.341 4.341 13 H 0.053 0.947 14 C -0.219 4.219 15 N -0.562 5.562 16 Si 0.765 3.235 17 H -0.207 1.207 18 H -0.224 1.224 19 H -0.225 1.225 20 C 0.005 3.995 21 C -0.011 4.011 22 O -0.379 6.379 23 C -0.167 4.167 24 C -0.006 4.006 25 C -0.090 4.090 26 C -0.186 4.186 27 C -0.165 4.165 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.166 0.834 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.217 0.783 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.116 0.884 49 H 0.104 0.896 50 H 0.079 0.921 51 H 0.073 0.927 52 H 0.076 0.924 53 H 0.091 0.909 54 H 0.092 0.908 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.011 -15.972 -3.389 16.603 hybrid contribution 1.244 1.539 -0.065 1.980 sum -1.768 -14.433 -3.454 14.945 Atomic orbital electron populations 1.21372 0.89511 1.03013 1.02971 1.21741 0.96010 0.89675 1.01664 1.21644 0.99321 0.95286 1.02961 1.22728 0.96788 1.04837 0.95618 1.20141 0.90283 0.76753 0.79626 1.90576 1.34173 1.55781 1.65385 1.48173 1.08266 1.52506 1.24103 1.21548 0.86577 0.94853 0.97317 1.22192 0.99716 0.94189 1.00168 1.20579 0.92286 0.84458 0.96028 1.43899 1.84575 1.00382 1.01404 1.18628 1.21347 0.97156 0.96960 0.94674 1.25290 0.95772 1.01089 0.99781 1.70027 1.20674 1.23477 1.41988 0.85746 0.77416 0.81604 0.78729 1.20722 1.22369 1.22491 1.21078 0.92899 1.00825 0.84672 1.22894 0.95853 0.89519 0.92827 1.86801 1.29467 1.59711 1.61905 1.22252 0.99273 0.94416 1.00779 1.21877 0.84927 0.94064 0.99722 1.21795 0.97682 0.99363 0.90187 1.21591 0.95584 1.01243 1.00161 1.21354 0.98380 0.96438 1.00323 0.92150 0.90836 0.90354 0.94271 0.91598 0.91596 0.83369 0.89649 0.90985 0.91876 0.94934 0.91595 0.94658 0.91448 0.92832 0.93928 0.94605 0.78297 0.93016 0.92342 0.88362 0.89579 0.92071 0.92679 0.92425 0.90880 0.90844 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 8.86 71.98 0.64 -1.24 16 2 C -0.09 -2.02 1.75 -52.18 -0.09 -2.11 16 3 C -0.14 -3.91 8.56 71.98 0.62 -3.29 16 4 C -0.18 -4.15 3.83 -11.54 -0.04 -4.20 16 5 C 0.54 16.34 5.69 87.66 0.50 16.84 16 6 O -0.58 -21.21 13.57 -3.04 -0.04 -21.25 16 7 N -0.60 -17.17 2.97 -818.96 -2.44 -19.60 16 8 C 0.12 3.56 6.42 86.36 0.55 4.12 16 9 C -0.12 -4.32 5.33 30.78 0.16 -4.15 16 10 C 0.17 6.37 2.59 45.13 0.12 6.49 16 11 N -0.58 -26.65 2.37 -677.31 -1.60 -28.25 16 12 C -0.21 -11.12 7.64 84.03 0.64 -10.48 16 13 H 0.04 1.99 6.88 -2.91 -0.02 1.97 16 14 C -0.02 -1.28 4.98 84.86 0.42 -0.86 16 15 N -0.92 -52.41 11.34 21.65 0.25 -52.16 16 16 Si 0.93 46.76 29.61 68.60 2.03 48.79 16 17 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 18 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 19 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 20 C 0.13 5.79 5.73 86.38 0.50 6.28 16 21 C 0.07 2.55 7.39 71.98 0.53 3.08 16 22 O -0.57 -23.69 13.03 -148.98 -1.94 -25.63 16 23 C -0.13 -4.40 5.09 30.66 0.16 -4.25 16 24 C 0.12 2.99 5.51 86.35 0.48 3.47 16 25 C -0.09 -1.98 2.69 -52.18 -0.14 -2.12 16 26 C -0.13 -3.40 7.87 71.98 0.57 -2.84 16 27 C -0.11 -1.68 8.88 71.98 0.64 -1.04 16 28 H 0.06 1.11 8.09 -2.39 -0.02 1.09 16 29 H 0.07 1.09 8.02 -2.39 -0.02 1.07 16 30 H 0.08 1.01 7.78 -2.39 -0.02 0.99 16 31 H 0.04 1.26 5.92 -2.39 -0.01 1.25 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 2.15 4.08 -2.39 -0.01 2.14 16 34 H 0.15 2.68 7.96 -2.39 -0.02 2.66 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 2.33 7.00 -2.39 -0.02 2.31 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.03 1.36 7.05 -2.39 -0.02 1.34 16 39 H 0.07 2.18 7.76 -2.39 -0.02 2.16 16 40 H 0.24 13.78 8.31 -92.70 -0.77 13.01 16 41 H 0.07 3.58 5.39 -2.39 -0.01 3.56 16 42 H 0.05 2.11 7.87 -2.38 -0.02 2.09 16 43 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.37 11.03 9.12 -74.06 -0.68 10.36 16 46 H 0.05 2.09 5.03 -2.39 -0.01 2.08 16 47 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.10 2.22 5.50 -2.39 -0.01 2.20 16 49 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.06 1.49 7.92 -2.38 -0.02 1.48 16 51 H 0.05 1.37 8.12 -2.39 -0.02 1.35 16 52 H 0.06 1.91 4.28 -2.39 -0.01 1.90 16 53 H 0.07 0.92 7.78 -2.39 -0.02 0.90 16 54 H 0.07 0.99 8.02 -2.39 -0.02 0.98 16 55 H 0.06 0.95 7.92 -2.39 -0.02 0.94 16 Total: -1.00 -68.42 405.82 2.70 -65.72 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.20 Total: 28.68 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 6.24 Total: 3.70 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -3.79 Total: -100.02 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -1.98 Total: -46.88 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -68.42 2.70 -65.72 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566132487.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.289 kcal (2) G-P(sol) polarization free energy of solvation -68.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds