Wall clock time and date at job start Tue Mar 31 2020 21:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46834 * 2 1 4 4 C 1.52998 * 109.46701 * 240.00113 * 2 1 3 5 5 C 1.52995 * 109.47352 * 299.99977 * 4 2 1 6 6 C 1.53002 * 109.46812 * 300.00014 * 5 4 2 7 7 C 1.53004 * 109.47145 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47089 * 64.99939 * 7 6 5 9 9 O 1.21289 * 120.00041 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00157 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00356 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47507 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.50754 * 304.89676 * 12 11 10 14 14 C 1.53296 * 109.51692 * 184.74704 * 12 11 10 15 15 N 1.47148 * 108.38587 * 187.77569 * 14 12 11 16 16 C 1.36935 * 120.97836 * 230.51302 * 15 14 12 17 17 H 1.08003 * 120.00149 * 26.24643 * 16 15 14 18 18 C 1.38811 * 119.99957 * 206.24993 * 16 15 14 19 19 N 1.31624 * 120.00080 * 16.90176 * 18 16 15 20 20 Si 1.86799 * 120.00022 * 196.90847 * 18 16 15 21 21 H 1.48503 * 109.47404 * 59.99640 * 20 18 16 22 22 H 1.48506 * 109.47054 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47017 * 299.99281 * 20 18 16 24 24 C 1.47151 * 118.03710 * 50.53048 * 15 14 12 25 25 C 1.53291 * 108.38599 * 309.46682 * 24 15 14 26 26 O 1.42959 * 109.51033 * 64.99582 * 12 11 10 27 27 C 1.52998 * 109.47118 * 60.00269 * 6 5 4 28 28 C 1.52995 * 109.47060 * 299.99579 * 27 6 5 29 29 H 1.08994 * 109.47598 * 59.99898 * 1 2 3 30 30 H 1.09002 * 109.46817 * 299.99338 * 1 2 3 31 31 H 1.09003 * 109.46629 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46763 * 59.99980 * 3 2 1 33 33 H 1.09002 * 109.46632 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47111 * 300.00400 * 3 2 1 35 35 H 1.09002 * 109.47195 * 60.00322 * 4 2 1 36 36 H 1.09005 * 109.46466 * 179.97438 * 4 2 1 37 37 H 1.09006 * 109.46872 * 180.02562 * 5 4 2 38 38 H 1.08996 * 109.47621 * 60.00127 * 5 4 2 39 39 H 1.09001 * 109.47123 * 299.99936 * 6 5 4 40 40 H 1.09001 * 109.47409 * 185.00221 * 7 6 5 41 41 H 1.08996 * 109.47024 * 305.00189 * 7 6 5 42 42 H 0.97003 * 119.99604 * 359.97438 * 10 8 7 43 43 H 1.09001 * 109.46991 * 300.00053 * 11 10 8 44 44 H 1.09000 * 109.47436 * 59.99982 * 11 10 8 45 45 H 1.09008 * 109.67685 * 307.49646 * 14 12 11 46 46 H 1.08999 * 109.68124 * 68.04463 * 14 12 11 47 47 H 0.96997 * 120.00275 * 180.02562 * 19 18 16 48 48 H 1.09001 * 109.67964 * 189.74070 * 24 15 14 49 49 H 1.09001 * 109.71252 * 69.21076 * 24 15 14 50 50 H 1.09002 * 109.51291 * 292.38088 * 25 24 15 51 51 H 1.08996 * 109.51129 * 172.22480 * 25 24 15 52 52 H 1.09004 * 109.47139 * 179.97438 * 27 6 5 53 53 H 1.08996 * 109.47002 * 60.00078 * 27 6 5 54 54 H 1.08996 * 109.47621 * 300.00120 * 28 27 6 55 55 H 1.09006 * 109.47283 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 6 1.5306 -4.3277 -0.0004 8 6 2.1319 -5.0725 -1.1643 9 8 2.8934 -4.5054 -1.9190 10 7 1.8235 -6.3688 -1.3666 11 6 2.4085 -7.0931 -2.4977 12 6 1.8990 -8.5357 -2.4981 13 1 2.1102 -8.9966 -1.5332 14 6 2.6002 -9.3262 -3.6087 15 7 1.9625 -10.6484 -3.7109 16 6 2.7118 -11.7945 -3.7068 17 1 3.6775 -11.8066 -3.2235 18 6 2.2301 -12.9408 -4.3239 19 7 1.2374 -12.8575 -5.1842 20 14 2.9905 -14.6017 -3.9332 21 1 2.8419 -14.8854 -2.4831 22 1 2.3015 -15.6583 -4.7170 23 1 4.4322 -14.5819 -4.2886 24 6 0.4959 -10.7025 -3.8181 25 6 -0.1028 -9.8450 -2.6973 26 8 0.4888 -8.5440 -2.7328 27 6 1.5301 -2.1638 1.2492 28 6 2.0401 -0.7213 1.2492 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.8937 -2.6776 -2.1392 38 1 0.4400 -2.1638 -1.2493 39 1 3.1301 -2.8849 -0.0002 40 1 1.8190 -4.8151 0.9310 41 1 0.4443 -4.3294 -0.0902 42 1 1.2148 -6.8224 -0.7628 43 1 2.1209 -6.6055 -3.4292 44 1 3.4948 -7.0919 -2.4073 45 1 2.5001 -8.7961 -4.5559 46 1 3.6557 -9.4455 -3.3641 47 1 0.9006 -13.6586 -5.6152 48 1 0.1578 -11.7333 -3.7122 49 1 0.1833 -10.3114 -4.7863 50 1 0.1012 -10.3115 -1.7335 51 1 -1.1799 -9.7592 -2.8404 52 1 1.8931 -2.6779 2.1391 53 1 0.4401 -2.1638 1.2492 54 1 3.1301 -0.7212 1.2492 55 1 1.6764 -0.2073 2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568229748.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:52 Heat of formation + Delta-G solvation = -112.607936 kcal Electronic energy + Delta-G solvation = -30154.540027 eV Core-core repulsion = 26189.839295 eV Total energy + Delta-G solvation = -3964.700732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.22644 -40.31526 -39.67751 -36.52589 -35.78840 -35.07489 -33.38446 -32.42016 -31.61496 -30.31016 -29.10207 -28.14066 -27.22102 -25.49314 -24.90421 -23.61086 -23.32511 -21.90890 -21.47206 -20.79814 -19.31014 -18.89980 -17.92143 -17.52585 -17.12612 -16.79369 -16.35347 -16.24354 -16.00834 -15.65572 -15.51776 -15.38601 -15.01690 -14.88051 -14.78041 -14.57599 -14.44653 -14.28142 -13.68446 -13.57128 -13.23112 -13.09227 -13.01271 -12.72535 -12.69225 -12.64148 -12.62179 -12.53037 -12.26464 -12.19670 -12.14682 -12.09163 -11.87825 -11.75975 -11.60988 -11.34741 -11.12823 -10.97164 -10.82396 -10.79352 -10.57704 -10.46273 -10.02242 -8.76967 -7.92372 -5.40021 1.46624 1.48349 1.55614 1.74318 2.23678 2.48298 2.77823 3.22530 3.48315 3.72405 3.76039 3.83567 3.94582 4.00097 4.07249 4.15189 4.23526 4.26013 4.41106 4.48523 4.51802 4.53775 4.56908 4.62060 4.65707 4.69424 4.70417 4.77568 4.78953 4.83683 4.88836 4.89072 4.90226 5.02196 5.04983 5.11164 5.14681 5.17885 5.23234 5.25498 5.29479 5.29689 5.36173 5.47617 5.52482 5.54079 5.55311 5.59840 5.67962 5.75744 6.24575 6.32027 6.63816 7.04805 7.34638 7.72816 8.26509 9.13480 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.034679 B = 0.001779 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.207347 B =15737.991126 C =15865.306763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.141 4.141 4 C -0.103 4.103 5 C -0.119 4.119 6 C -0.065 4.065 7 C -0.130 4.130 8 C 0.506 3.494 9 O -0.581 6.581 10 N -0.716 5.716 11 C 0.142 3.858 12 C 0.081 3.919 13 H 0.070 0.930 14 C 0.116 3.884 15 N -0.612 5.612 16 C -0.268 4.268 17 H 0.073 0.927 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.973 3.027 21 H -0.274 1.274 22 H -0.294 1.294 23 H -0.276 1.276 24 C 0.142 3.858 25 C 0.054 3.946 26 O -0.389 6.389 27 C -0.111 4.111 28 C -0.106 4.106 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.414 0.586 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.015 0.985 46 H 0.071 0.929 47 H 0.252 0.748 48 H 0.068 0.932 49 H -0.003 1.003 50 H 0.052 0.948 51 H 0.109 0.891 52 H 0.073 0.927 53 H 0.076 0.924 54 H 0.054 0.946 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.071 23.907 16.914 29.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.198 4.198 4 C -0.141 4.141 5 C -0.156 4.156 6 C -0.084 4.084 7 C -0.170 4.170 8 C 0.294 3.706 9 O -0.461 6.461 10 N -0.369 5.369 11 C 0.017 3.983 12 C 0.021 3.979 13 H 0.088 0.912 14 C -0.011 4.011 15 N -0.337 5.337 16 C -0.398 4.398 17 H 0.090 0.910 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.800 3.200 21 H -0.200 1.200 22 H -0.220 1.220 23 H -0.202 1.202 24 C 0.017 3.983 25 C -0.023 4.023 26 O -0.308 6.308 27 C -0.149 4.149 28 C -0.143 4.143 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.250 0.750 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.033 0.967 46 H 0.089 0.911 47 H 0.061 0.939 48 H 0.086 0.914 49 H 0.015 0.985 50 H 0.070 0.930 51 H 0.127 0.873 52 H 0.092 0.908 53 H 0.094 0.906 54 H 0.072 0.928 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.696 24.331 16.241 29.377 hybrid contribution 0.347 -1.700 -0.591 1.833 sum -2.349 22.630 15.650 27.615 Atomic orbital electron populations 1.21950 0.94177 1.02169 1.01629 1.20557 0.96084 0.95040 0.94892 1.21858 1.00732 0.95292 1.01910 1.21525 0.99748 0.95302 0.97529 1.21681 1.00360 0.95459 0.98143 1.20843 0.99818 0.92182 0.95605 1.21810 1.02896 0.95787 0.96493 1.21406 0.80744 0.81434 0.86972 1.90663 1.38082 1.68110 1.49271 1.45931 1.49082 1.11583 1.30258 1.21100 0.97931 0.89249 0.90040 1.22629 0.82223 0.94660 0.98370 0.91200 1.21610 0.97015 0.86497 0.95950 1.44335 1.02111 1.01110 1.86114 1.19523 1.02633 0.88920 1.28730 0.90972 1.25847 0.99867 1.02448 0.96418 1.70188 1.30691 1.28500 1.28784 0.85267 0.77891 0.79033 0.77789 1.20017 1.22017 1.20199 1.21324 0.83380 0.99297 0.94345 1.23157 0.97819 0.83140 0.98207 1.87804 1.20909 1.28953 1.93161 1.21617 1.01566 0.95183 0.96486 1.21561 1.00177 0.95398 0.97182 0.93277 0.92044 0.91927 0.91896 0.93108 0.92917 0.92769 0.93373 0.93231 0.91641 0.92620 0.86449 0.87003 0.74997 0.92530 0.89871 0.96721 0.91074 0.93905 0.91375 0.98460 0.92953 0.87296 0.90804 0.90565 0.92758 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 7.78 71.98 0.56 -1.13 16 2 C -0.07 -0.88 0.77 -52.18 -0.04 -0.92 16 3 C -0.14 -1.71 8.47 71.98 0.61 -1.10 16 4 C -0.10 -1.83 4.73 30.59 0.14 -1.69 16 5 C -0.12 -2.33 4.67 30.59 0.14 -2.18 16 6 C -0.07 -1.09 1.84 -10.79 -0.02 -1.11 16 7 C -0.13 -1.96 5.18 29.85 0.15 -1.81 16 8 C 0.51 12.15 7.55 87.66 0.66 12.81 16 9 O -0.58 -18.79 13.97 -3.06 -0.04 -18.84 16 10 N -0.72 -16.73 5.50 -463.06 -2.55 -19.28 16 11 C 0.14 4.09 5.35 86.38 0.46 4.55 16 12 C 0.08 2.66 2.81 30.69 0.09 2.75 16 13 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 14 C 0.12 4.79 6.02 86.36 0.52 5.31 16 15 N -0.61 -30.63 3.05 -697.55 -2.13 -32.76 16 16 C -0.27 -14.55 9.65 84.03 0.81 -13.73 16 17 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 18 C -0.05 -2.77 4.95 84.86 0.42 -2.35 16 19 N -0.94 -54.82 11.14 21.65 0.24 -54.58 16 20 Si 0.97 43.94 29.59 68.60 2.03 45.97 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.14 6.80 5.44 86.35 0.47 7.27 16 25 C 0.05 1.97 6.98 72.08 0.50 2.47 16 26 O -0.39 -13.64 10.33 -148.98 -1.54 -15.18 16 27 C -0.11 -1.28 4.93 30.59 0.15 -1.13 16 28 C -0.11 -1.28 4.73 30.59 0.14 -1.13 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.75 4.81 -2.39 -0.01 0.73 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.05 1.31 5.95 -2.38 -0.01 1.30 16 38 H 0.07 1.15 6.43 -2.39 -0.02 1.13 16 39 H 0.06 1.17 7.95 -2.39 -0.02 1.15 16 40 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.41 7.76 8.47 -92.71 -0.79 6.97 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 46 H 0.07 2.79 7.96 -2.39 -0.02 2.77 16 47 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 48 H 0.07 3.60 6.14 -2.39 -0.01 3.59 16 49 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 50 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 52 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 53 H 0.08 0.76 6.43 -2.39 -0.02 0.74 16 54 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 55 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -67.85 411.78 1.86 -65.99 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.06 Total: 21.78 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.78 Total: 6.89 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -4.43 Total: -106.62 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.58 Total: -34.01 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -67.85 1.86 -65.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568229748.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.620 kcal (2) G-P(sol) polarization free energy of solvation -67.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds