Wall clock time and date at job start Tue Mar 31 2020 20:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99971 * 2 1 4 4 H 1.48500 * 109.47280 * 270.00294 * 3 2 1 5 5 H 1.48497 * 109.46878 * 30.00686 * 3 2 1 6 6 H 1.48499 * 109.47061 * 150.00243 * 3 2 1 7 7 C 1.38818 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99806 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00152 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00088 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47283 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47435 * 185.07456 * 11 10 9 13 13 H 1.09007 * 109.69921 * 61.30712 * 12 11 10 14 14 C 1.53165 * 109.58899 * 300.94810 * 12 11 10 15 15 C 1.53041 * 109.32623 * 185.56665 * 14 12 11 16 16 C 1.53040 * 109.52494 * 61.36755 * 15 14 12 17 17 C 1.53187 * 109.31830 * 298.64277 * 16 15 14 18 18 N 1.46921 * 109.58603 * 181.66138 * 12 11 10 19 19 C 1.34773 * 120.63534 * 353.41784 * 18 12 11 20 20 O 1.21276 * 119.99785 * 354.48037 * 19 18 12 21 21 C 1.50701 * 120.00007 * 174.47025 * 19 18 12 22 22 O 1.42905 * 109.46748 * 180.02562 * 21 19 18 23 23 C 1.42899 * 113.99596 * 180.02562 * 22 21 19 24 24 C 1.53001 * 109.47335 * 270.00233 * 23 22 21 25 25 C 1.52999 * 109.46836 * 180.02562 * 24 23 22 26 26 C 1.52997 * 109.47735 * 60.00145 * 25 24 23 27 27 C 1.53001 * 109.46840 * 299.99852 * 26 25 24 28 28 C 1.53007 * 109.47302 * 59.99970 * 27 26 25 29 29 H 0.96996 * 120.00196 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99817 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47389 * 60.00288 * 10 9 7 32 32 H 1.09008 * 109.46771 * 300.00045 * 10 9 7 33 33 H 1.09001 * 109.46954 * 65.07898 * 11 10 9 34 34 H 1.09000 * 109.47250 * 305.07843 * 11 10 9 35 35 H 1.08997 * 109.47908 * 65.62045 * 14 12 11 36 36 H 1.08994 * 109.50168 * 305.52748 * 14 12 11 37 37 H 1.09004 * 109.46010 * 301.35796 * 15 14 12 38 38 H 1.08991 * 109.46126 * 181.38200 * 15 14 12 39 39 H 1.09005 * 109.49878 * 58.59570 * 16 15 14 40 40 H 1.09006 * 109.49883 * 178.68848 * 16 15 14 41 41 H 1.08995 * 109.59220 * 174.41969 * 17 16 15 42 42 H 1.08998 * 109.58824 * 294.85095 * 17 16 15 43 43 H 1.08998 * 109.47502 * 300.00329 * 21 19 18 44 44 H 1.08997 * 109.47121 * 60.00872 * 21 19 18 45 45 H 1.09002 * 109.47170 * 30.00628 * 23 22 21 46 46 H 1.08998 * 109.46681 * 299.99937 * 24 23 22 47 47 H 1.09001 * 109.46865 * 60.00382 * 24 23 22 48 48 H 1.08998 * 109.47112 * 299.99279 * 25 24 23 49 49 H 1.09006 * 109.47031 * 179.97438 * 25 24 23 50 50 H 1.08994 * 109.47794 * 179.97438 * 26 25 24 51 51 H 1.08996 * 109.47021 * 59.99350 * 26 25 24 52 52 H 1.09002 * 109.47314 * 299.99685 * 27 26 25 53 53 H 1.09001 * 109.47385 * 179.97438 * 27 26 25 54 54 H 1.08995 * 109.47047 * 180.02562 * 28 27 26 55 55 H 1.09002 * 109.47169 * 59.99626 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 6 1.8245 -6.1411 0.1264 13 1 2.3725 -6.1602 1.0685 14 6 2.8054 -6.2838 -1.0413 15 6 3.4616 -7.6653 -0.9856 16 6 2.3879 -8.7474 -1.1217 17 6 1.4021 -8.6328 0.0451 18 7 0.8752 -7.2617 0.0861 19 6 -0.4536 -7.0365 0.0863 20 8 -0.8773 -5.9081 0.2207 21 6 -1.4129 -8.1867 -0.0809 22 8 -2.7547 -7.6964 -0.0478 23 6 -3.7485 -8.7122 -0.1980 24 6 -4.0722 -8.8936 -1.6824 25 6 -5.1366 -9.9808 -1.8430 26 6 -6.4040 -9.5689 -1.0914 27 6 -6.0803 -9.3875 0.3929 28 6 -5.0159 -8.3002 0.5537 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6847 -3.7146 0.8895 32 1 2.6848 -3.7145 -0.8906 33 1 0.4990 -4.8143 -0.9334 34 1 0.3785 -4.7123 0.8396 35 1 3.5728 -5.5134 -0.9675 36 1 2.2682 -6.1740 -1.9832 37 1 3.9779 -7.7839 -0.0329 38 1 4.1782 -7.7601 -1.8013 39 1 1.8546 -8.6144 -2.0630 40 1 2.8582 -9.7307 -1.1054 41 1 0.5814 -9.3353 -0.0994 42 1 1.9155 -8.8549 0.9806 43 1 -1.2291 -8.6772 -1.0367 44 1 -1.2670 -8.9019 0.7286 45 1 -3.3730 -9.6509 0.2093 46 1 -4.4477 -7.9548 -2.0896 47 1 -3.1692 -9.1867 -2.2179 48 1 -4.7615 -10.9196 -1.4357 49 1 -5.3676 -10.1097 -2.9005 50 1 -7.1625 -10.3432 -1.2062 51 1 -6.7791 -8.6301 -1.4988 52 1 -5.7052 -10.3263 0.8004 53 1 -6.9831 -9.0936 0.9284 54 1 -4.7850 -8.1714 1.6111 55 1 -5.3910 -7.3614 0.1463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568386777.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:44 Heat of formation + Delta-G solvation = -103.802359 kcal Electronic energy + Delta-G solvation = -30558.100855 eV Core-core repulsion = 26593.781962 eV Total energy + Delta-G solvation = -3964.318894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.65442 -40.10600 -38.49830 -37.24943 -36.94558 -34.64752 -33.84640 -32.48455 -31.72886 -30.94619 -29.31484 -28.70690 -26.17540 -25.33347 -24.06689 -23.51776 -23.12828 -22.12868 -21.91186 -20.83894 -19.98850 -19.22410 -18.15446 -17.57994 -17.26475 -16.79212 -16.67342 -16.14576 -15.94348 -15.56401 -15.47305 -15.36040 -15.13421 -14.97084 -14.87782 -14.72279 -14.43447 -14.15588 -14.04661 -13.78975 -13.50256 -13.36400 -13.18301 -13.07138 -12.91972 -12.78362 -12.59891 -12.35058 -12.13060 -12.07204 -11.98335 -11.92374 -11.90459 -11.77185 -11.55062 -11.49828 -11.44604 -11.38037 -11.24640 -10.95293 -10.41997 -9.98492 -9.56247 -9.03928 -7.96211 -5.27820 1.42965 1.47680 1.56165 1.58718 1.72425 2.53765 2.80382 3.35631 3.46448 3.74304 3.77551 3.82692 3.84279 3.94968 4.05511 4.07903 4.12644 4.13568 4.19718 4.25310 4.26809 4.32603 4.34596 4.42413 4.48252 4.55362 4.57389 4.58491 4.66087 4.70982 4.73500 4.78818 4.91782 4.94571 4.98186 5.03320 5.10656 5.11836 5.17224 5.22513 5.23414 5.24900 5.29689 5.36708 5.38478 5.39601 5.48196 5.50413 5.51034 5.69715 6.18869 6.24358 6.47623 7.25441 7.28489 8.05207 8.30001 9.28169 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009806 B = 0.002652 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.661836 B =10557.303965 C =12941.851905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.084 4.084 3 Si 0.984 3.016 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.750 5.750 10 C 0.149 3.851 11 C -0.095 4.095 12 C 0.159 3.841 13 H 0.081 0.919 14 C -0.129 4.129 15 C -0.116 4.116 16 C -0.131 4.131 17 C 0.098 3.902 18 N -0.607 5.607 19 C 0.495 3.505 20 O -0.561 6.561 21 C 0.051 3.949 22 O -0.396 6.396 23 C 0.087 3.913 24 C -0.142 4.142 25 C -0.111 4.111 26 C -0.125 4.125 27 C -0.109 4.109 28 C -0.121 4.121 29 H 0.251 0.749 30 H 0.368 0.632 31 H 0.020 0.980 32 H 0.025 0.975 33 H 0.036 0.964 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.071 0.929 50 H 0.080 0.920 51 H 0.050 0.950 52 H 0.080 0.920 53 H 0.071 0.929 54 H 0.063 0.937 55 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 -34.237 -1.913 34.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.276 4.276 3 Si 0.812 3.188 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.381 4.381 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.022 3.978 11 C -0.133 4.133 12 C 0.056 3.944 13 H 0.099 0.901 14 C -0.168 4.168 15 C -0.153 4.153 16 C -0.169 4.169 17 C -0.022 4.022 18 N -0.342 5.342 19 C 0.284 3.716 20 O -0.439 6.439 21 C -0.028 4.028 22 O -0.316 6.316 23 C 0.030 3.970 24 C -0.180 4.180 25 C -0.148 4.148 26 C -0.163 4.163 27 C -0.147 4.147 28 C -0.159 4.159 29 H 0.060 0.940 30 H 0.199 0.801 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.120 0.880 44 H 0.128 0.872 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.089 0.911 50 H 0.098 0.902 51 H 0.069 0.931 52 H 0.098 0.902 53 H 0.090 0.910 54 H 0.081 0.919 55 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.032 -33.377 -1.809 33.564 hybrid contribution -0.192 1.600 -0.142 1.618 sum -3.224 -31.777 -1.951 32.000 Atomic orbital electron populations 1.69894 1.07049 1.26170 1.59456 1.25780 0.96501 1.01732 1.03565 0.84986 0.77629 0.78585 0.77614 1.21052 1.22024 1.18913 1.19731 0.91622 0.85264 1.41453 0.90171 1.42674 1.05546 1.01634 1.89372 1.20971 0.94031 0.85292 0.97471 1.21913 0.96409 0.93123 1.01822 1.21124 0.89447 0.84349 0.99525 0.90098 1.22001 0.98064 0.99720 0.96979 1.21532 0.97961 0.92492 1.03324 1.21937 0.96606 1.00424 0.97923 1.22173 0.99190 0.80405 1.00479 1.48232 1.04146 1.08626 1.73169 1.21095 0.83561 0.90563 0.76390 1.90869 1.78348 1.25444 1.49249 1.22423 0.82290 0.93794 1.04322 1.88077 1.13980 1.35285 1.94221 1.22371 0.88100 0.90844 0.95695 1.22055 1.00144 0.99724 0.96091 1.21481 0.94411 0.97908 1.01030 1.21609 0.97943 1.01650 0.95051 1.21485 0.97843 0.98327 0.97014 1.21635 0.94594 0.99573 1.00074 0.93985 0.80086 0.96178 0.95720 0.94490 0.92141 0.90833 0.93126 0.90566 0.90490 0.92156 0.87456 0.87309 0.89250 0.87974 0.87240 0.89469 0.93503 0.91178 0.90152 0.91076 0.90177 0.93096 0.90185 0.90987 0.91853 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.81 13.06 21.65 0.28 -65.53 16 2 C -0.08 -5.28 5.50 84.86 0.47 -4.82 16 3 Si 0.98 49.36 29.55 68.60 2.03 51.38 16 4 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 5 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 6 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.25 -15.40 9.99 84.04 0.84 -14.56 16 8 H 0.08 4.65 7.83 -2.91 -0.02 4.63 16 9 N -0.75 -44.58 5.60 -343.45 -1.92 -46.50 16 10 C 0.15 6.96 5.73 86.38 0.50 7.45 16 11 C -0.09 -3.97 3.29 30.59 0.10 -3.87 16 12 C 0.16 4.62 3.03 44.97 0.14 4.75 16 13 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 14 C -0.13 -3.12 4.82 30.66 0.15 -2.97 16 15 C -0.12 -1.70 5.89 30.62 0.18 -1.52 16 16 C -0.13 -1.39 6.08 30.67 0.19 -1.20 16 17 C 0.10 1.18 6.35 86.36 0.55 1.73 16 18 N -0.61 -14.54 2.97 -795.08 -2.36 -16.90 16 19 C 0.50 15.00 7.61 87.66 0.67 15.67 16 20 O -0.56 -24.60 12.05 16.02 0.19 -24.40 16 21 C 0.05 1.03 4.58 71.24 0.33 1.36 16 22 O -0.40 -10.88 9.52 -129.94 -1.24 -12.11 16 23 C 0.09 1.60 2.61 30.60 0.08 1.68 16 24 C -0.14 -2.37 5.54 30.59 0.17 -2.20 16 25 C -0.11 -1.25 5.92 30.59 0.18 -1.07 16 26 C -0.13 -1.48 5.92 30.59 0.18 -1.30 16 27 C -0.11 -1.37 5.92 30.60 0.18 -1.18 16 28 C -0.12 -2.30 5.57 30.60 0.17 -2.13 16 29 H 0.25 16.25 8.31 -92.71 -0.77 15.48 16 30 H 0.37 24.02 7.67 -92.70 -0.71 23.31 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.02 1.11 6.84 -2.38 -0.02 1.10 16 33 H 0.04 1.73 7.25 -2.39 -0.02 1.72 16 34 H 0.06 2.96 6.23 -2.39 -0.01 2.94 16 35 H 0.07 1.88 6.86 -2.39 -0.02 1.87 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.11 0.69 5.93 -2.39 -0.01 0.68 16 42 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 1.46 7.64 -2.39 -0.02 1.45 16 44 H 0.11 1.40 7.66 -2.39 -0.02 1.38 16 45 H 0.09 1.08 7.79 -2.39 -0.02 1.07 16 46 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 1.03 7.87 -2.39 -0.02 1.01 16 48 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 50 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 53 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 54 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 55 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -86.48 414.72 2.17 -84.31 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: 0.13 Total: 33.93 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 5.06 Total: -4.17 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -4.00 Total: -128.94 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.04 Total: -36.52 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.03 Total: 51.38 kcal Total: -86.48 2.17 -84.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568386777.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.490 kcal (2) G-P(sol) polarization free energy of solvation -86.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds