Wall clock time and date at job start Tue Mar 31 2020 20:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99699 * 2 1 4 4 H 1.48505 * 109.46710 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47086 * 300.00089 * 3 2 1 6 6 H 1.48496 * 109.47204 * 60.00414 * 3 2 1 7 7 C 1.38815 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99859 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00063 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00260 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47662 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47288 * 174.74266 * 11 10 9 13 13 H 1.09005 * 109.70168 * 301.57903 * 12 11 10 14 14 C 1.53614 * 109.66891 * 62.17677 * 12 11 10 15 15 C 1.53039 * 109.24516 * 174.54971 * 14 12 11 16 16 C 1.53040 * 109.53553 * 298.51081 * 15 14 12 17 17 C 1.53192 * 109.31311 * 61.36741 * 16 15 14 18 18 N 1.46928 * 108.77401 * 305.36144 * 17 16 15 19 19 C 1.34770 * 120.62913 * 233.58693 * 18 17 16 20 20 O 1.21285 * 120.00022 * 174.86377 * 19 18 17 21 21 C 1.50700 * 120.00572 * 354.86551 * 19 18 17 22 22 O 1.42899 * 109.47658 * 179.97438 * 21 19 18 23 23 C 1.42898 * 114.00057 * 179.97438 * 22 21 19 24 24 C 1.53006 * 109.47224 * 270.00017 * 23 22 21 25 25 C 1.52992 * 109.46949 * 180.02562 * 24 23 22 26 26 C 1.53008 * 109.47362 * 59.99924 * 25 24 23 27 27 C 1.52997 * 109.46991 * 300.00067 * 26 25 24 28 28 C 1.53001 * 109.47137 * 59.99963 * 27 26 25 29 29 H 0.96998 * 120.00176 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00225 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47348 * 59.99464 * 10 9 7 32 32 H 1.09000 * 109.46581 * 299.99715 * 10 9 7 33 33 H 1.09000 * 109.47035 * 54.73883 * 11 10 9 34 34 H 1.09002 * 109.47002 * 294.74052 * 11 10 9 35 35 H 1.09001 * 109.63272 * 54.55998 * 14 12 11 36 36 H 1.09005 * 109.45645 * 294.43633 * 14 12 11 37 37 H 1.09004 * 109.45969 * 178.49182 * 15 14 12 38 38 H 1.08996 * 109.45095 * 58.52666 * 15 14 12 39 39 H 1.08998 * 109.50086 * 301.40746 * 16 15 14 40 40 H 1.09007 * 109.51960 * 181.32942 * 16 15 14 41 41 H 1.08995 * 109.58570 * 185.57477 * 17 16 15 42 42 H 1.08997 * 109.58663 * 65.14861 * 17 16 15 43 43 H 1.08998 * 109.46821 * 59.99536 * 21 19 18 44 44 H 1.09007 * 109.46415 * 300.00182 * 21 19 18 45 45 H 1.08998 * 109.47054 * 29.99978 * 23 22 21 46 46 H 1.09004 * 109.46768 * 300.00227 * 24 23 22 47 47 H 1.08997 * 109.46571 * 60.00233 * 24 23 22 48 48 H 1.09007 * 109.47485 * 300.00194 * 25 24 23 49 49 H 1.08996 * 109.47190 * 180.02562 * 25 24 23 50 50 H 1.08998 * 109.46782 * 179.97438 * 26 25 24 51 51 H 1.09001 * 109.46674 * 60.00148 * 26 25 24 52 52 H 1.08998 * 109.47059 * 299.99875 * 27 26 25 53 53 H 1.08996 * 109.47114 * 179.97438 * 27 26 25 54 54 H 1.09004 * 109.46960 * 179.97438 * 28 27 26 55 55 H 1.08998 * 109.47218 * 60.00009 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.0640 -4.8198 -0.0022 12 6 1.8244 -6.1407 -0.1344 13 1 2.4113 -6.1365 -1.0529 14 6 2.7540 -6.3254 1.0745 15 6 3.4068 -7.7077 1.0024 16 6 2.3245 -8.7883 1.0579 17 6 1.3899 -8.6316 -0.1456 18 7 0.8701 -7.2575 -0.1650 19 6 -0.4566 -7.0259 -0.2154 20 8 -0.8775 -5.8911 -0.1370 21 6 -1.4173 -8.1768 -0.3692 22 8 -2.7566 -7.6792 -0.3960 23 6 -3.7512 -8.6949 -0.5401 24 6 -4.0297 -8.9289 -2.0263 25 6 -5.0952 -10.0160 -2.1806 26 6 -6.3828 -9.5707 -1.4843 27 6 -6.1043 -9.3367 0.0018 28 6 -5.0388 -8.2495 0.1561 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.6842 -3.7149 0.8888 32 1 2.6854 -3.7141 -0.8912 33 1 0.3772 -4.7102 -0.8416 34 1 0.5006 -4.8167 0.9309 35 1 2.1773 -6.2430 1.9958 36 1 3.5268 -5.5568 1.0590 37 1 4.0877 -7.8321 1.8444 38 1 3.9628 -7.7982 0.0693 39 1 1.7520 -8.6828 1.9794 40 1 2.7913 -9.7730 1.0303 41 1 0.5614 -9.3345 -0.0588 42 1 1.9421 -8.8263 -1.0649 43 1 -1.3012 -8.8616 0.4708 44 1 -1.2064 -8.7040 -1.2997 45 1 -3.3942 -9.6199 -0.0874 46 1 -4.3868 -8.0038 -2.4790 47 1 -3.1123 -9.2457 -2.5223 48 1 -4.7386 -10.9412 -1.7277 49 1 -5.2933 -10.1829 -3.2393 50 1 -7.1419 -10.3450 -1.5946 51 1 -6.7394 -8.6455 -1.9372 52 1 -5.7476 -10.2618 0.4546 53 1 -7.0214 -9.0191 0.4978 54 1 -4.8407 -8.0826 1.2149 55 1 -5.3955 -7.3244 -0.2967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568386778.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:49 Heat of formation + Delta-G solvation = -103.443471 kcal Electronic energy + Delta-G solvation = -30522.196780 eV Core-core repulsion = 26557.893449 eV Total energy + Delta-G solvation = -3964.303331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.64782 -40.10355 -38.47536 -37.24827 -36.94194 -34.63318 -33.85877 -32.47926 -31.72795 -30.94108 -29.32721 -28.69375 -26.17187 -25.32281 -24.04499 -23.51725 -23.12820 -22.15730 -21.90644 -20.85527 -19.98342 -19.22705 -18.13797 -17.52920 -17.18127 -16.90468 -16.61417 -16.30434 -15.88358 -15.57273 -15.43886 -15.39535 -15.13521 -14.98367 -14.85329 -14.62586 -14.45654 -14.25206 -13.94655 -13.77280 -13.52913 -13.34346 -13.17264 -13.06164 -12.95025 -12.81367 -12.64139 -12.31836 -12.09976 -12.06760 -11.98279 -11.94484 -11.88637 -11.77396 -11.53414 -11.49815 -11.45487 -11.36839 -11.24308 -10.96078 -10.41845 -10.01053 -9.52479 -9.03944 -7.96335 -5.27893 1.43037 1.46745 1.56887 1.60469 1.71242 2.53628 2.80785 3.35640 3.46807 3.74249 3.78037 3.82204 3.84114 3.94639 4.05708 4.08550 4.11766 4.13777 4.20399 4.25651 4.26893 4.32882 4.34717 4.42785 4.48996 4.55504 4.57537 4.58168 4.66343 4.71759 4.73487 4.78802 4.91881 4.94639 4.97654 5.03467 5.10844 5.11682 5.17738 5.22596 5.23530 5.24492 5.29839 5.38530 5.38635 5.38870 5.48022 5.50841 5.51305 5.69704 6.18926 6.24366 6.47757 7.25434 7.28482 8.05183 8.29985 9.28218 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009659 B = 0.002649 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.232359 B =10567.636657 C =13037.788252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.085 4.085 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.148 3.852 11 C -0.090 4.090 12 C 0.158 3.842 13 H 0.084 0.916 14 C -0.129 4.129 15 C -0.115 4.115 16 C -0.131 4.131 17 C 0.099 3.901 18 N -0.607 5.607 19 C 0.494 3.506 20 O -0.561 6.561 21 C 0.051 3.949 22 O -0.396 6.396 23 C 0.087 3.913 24 C -0.142 4.142 25 C -0.111 4.111 26 C -0.125 4.125 27 C -0.109 4.109 28 C -0.121 4.121 29 H 0.251 0.749 30 H 0.368 0.632 31 H 0.024 0.976 32 H 0.020 0.980 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.047 0.953 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.051 0.949 52 H 0.079 0.921 53 H 0.071 0.929 54 H 0.061 0.939 55 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 -34.314 -1.236 34.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.276 4.276 3 Si 0.812 3.188 4 H -0.185 1.185 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.021 3.979 11 C -0.128 4.128 12 C 0.055 3.945 13 H 0.102 0.898 14 C -0.168 4.168 15 C -0.153 4.153 16 C -0.169 4.169 17 C -0.022 4.022 18 N -0.342 5.342 19 C 0.283 3.717 20 O -0.439 6.439 21 C -0.028 4.028 22 O -0.316 6.316 23 C 0.030 3.970 24 C -0.180 4.180 25 C -0.148 4.148 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.159 4.159 29 H 0.060 0.940 30 H 0.199 0.801 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.090 0.910 50 H 0.098 0.902 51 H 0.069 0.931 52 H 0.098 0.902 53 H 0.090 0.910 54 H 0.080 0.920 55 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.033 -33.455 -1.181 33.613 hybrid contribution -0.215 1.604 0.028 1.619 sum -3.248 -31.851 -1.154 32.037 Atomic orbital electron populations 1.69901 1.07046 1.26086 1.59544 1.25780 0.96507 1.01729 1.03613 0.84922 0.78211 0.78921 0.76771 1.18492 1.21798 1.21797 1.19765 0.91625 0.85253 1.41281 0.90158 1.42679 1.05554 1.01640 1.89343 1.20989 0.94083 0.85375 0.97460 1.21891 0.96100 0.93017 1.01792 1.21249 0.89485 0.84407 0.99374 0.89839 1.22076 0.98428 0.99642 0.96641 1.21529 0.97904 0.92474 1.03379 1.21934 0.96878 1.00390 0.97696 1.22170 0.99535 0.80273 1.00250 1.48226 1.04252 1.08582 1.73107 1.21100 0.83562 0.90657 0.76415 1.90892 1.78357 1.25015 1.49597 1.22426 0.82351 0.93656 1.04382 1.88074 1.14172 1.34804 1.94527 1.22368 0.88000 0.90722 0.95915 1.22053 1.00249 0.99675 0.96004 1.21481 0.94251 0.97798 1.01307 1.21611 0.97929 1.01544 0.95158 1.21482 0.97858 0.98256 0.97079 1.21633 0.94461 0.99512 1.00295 0.93997 0.80083 0.95764 0.96170 0.92781 0.94053 0.93249 0.90898 0.90552 0.90458 0.92371 0.87418 0.87354 0.89103 0.87475 0.87725 0.89538 0.93429 0.91067 0.90195 0.91016 0.90189 0.93062 0.90223 0.91021 0.91978 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.83 13.06 21.65 0.28 -65.55 16 2 C -0.08 -5.32 5.50 84.86 0.47 -4.85 16 3 Si 0.98 49.40 29.55 68.60 2.03 51.42 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 7 C -0.25 -15.31 9.99 84.04 0.84 -14.47 16 8 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 9 N -0.75 -44.59 5.60 -343.46 -1.92 -46.51 16 10 C 0.15 6.90 5.82 86.38 0.50 7.40 16 11 C -0.09 -3.77 3.24 30.59 0.10 -3.67 16 12 C 0.16 4.58 3.01 45.11 0.14 4.72 16 13 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 14 C -0.13 -3.14 4.93 30.81 0.15 -2.99 16 15 C -0.12 -1.71 5.88 30.62 0.18 -1.53 16 16 C -0.13 -1.42 6.08 30.67 0.19 -1.24 16 17 C 0.10 1.17 6.32 86.36 0.55 1.72 16 18 N -0.61 -14.50 2.97 -794.24 -2.36 -16.85 16 19 C 0.49 14.95 7.68 87.66 0.67 15.62 16 20 O -0.56 -24.59 11.91 15.99 0.19 -24.40 16 21 C 0.05 1.03 4.63 71.24 0.33 1.36 16 22 O -0.40 -10.87 9.52 -129.94 -1.24 -12.11 16 23 C 0.09 1.60 2.61 30.60 0.08 1.68 16 24 C -0.14 -2.32 5.54 30.59 0.17 -2.15 16 25 C -0.11 -1.23 5.92 30.59 0.18 -1.05 16 26 C -0.12 -1.47 5.92 30.60 0.18 -1.29 16 27 C -0.11 -1.38 5.92 30.59 0.18 -1.20 16 28 C -0.12 -2.32 5.57 30.60 0.17 -2.15 16 29 H 0.25 16.22 8.31 -92.71 -0.77 15.45 16 30 H 0.37 24.04 7.67 -92.71 -0.71 23.33 16 31 H 0.02 1.10 6.91 -2.39 -0.02 1.08 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 2.63 6.35 -2.39 -0.02 2.61 16 34 H 0.04 1.95 7.12 -2.39 -0.02 1.94 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.87 6.93 -2.38 -0.02 1.85 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.11 0.69 5.96 -2.39 -0.01 0.68 16 42 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.11 1.41 7.42 -2.39 -0.02 1.39 16 44 H 0.11 1.44 7.84 -2.38 -0.02 1.43 16 45 H 0.09 1.08 7.79 -2.39 -0.02 1.07 16 46 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.07 1.02 7.87 -2.39 -0.02 1.00 16 48 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 49 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 52 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 54 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 55 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -86.62 414.93 2.19 -84.43 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.13 Total: 33.67 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 5.08 Total: -4.10 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -4.00 Total: -128.91 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -1.05 Total: -36.51 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.03 Total: 51.42 kcal Total: -86.62 2.19 -84.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568386778.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.016 kcal (2) G-P(sol) polarization free energy of solvation -86.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds