Wall clock time and date at job start Tue Mar 31 2020 21:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00655 * 2 1 4 4 H 1.09001 * 109.46991 * 29.99347 * 3 2 1 5 5 C 1.50710 * 109.46990 * 269.99951 * 3 2 1 6 6 O 1.21279 * 119.99611 * 355.27059 * 5 3 2 7 7 N 1.34775 * 119.99931 * 174.99284 * 5 3 2 8 8 C 1.46500 * 119.99640 * 179.97438 * 7 5 3 9 9 C 1.53000 * 109.46812 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.49803 * 299.93639 * 9 8 7 11 11 C 1.53042 * 109.49828 * 179.83864 * 9 8 7 12 12 C 1.53034 * 109.53867 * 178.68562 * 11 9 8 13 13 C 1.53188 * 109.31578 * 61.36475 * 12 11 9 14 14 N 1.46924 * 108.77355 * 305.36420 * 13 12 11 15 15 C 1.36940 * 120.62995 * 233.63001 * 14 13 12 16 16 H 1.07997 * 120.00106 * 27.67224 * 15 14 13 17 17 C 1.38812 * 119.99765 * 207.67456 * 15 14 13 18 18 N 1.31620 * 120.00301 * 17.35957 * 17 15 14 19 19 Si 1.86802 * 119.99721 * 197.36194 * 17 15 14 20 20 H 1.48504 * 109.47339 * 89.99888 * 19 17 15 21 21 H 1.48504 * 109.47129 * 209.99561 * 19 17 15 22 22 H 1.48500 * 109.47165 * 329.99665 * 19 17 15 23 23 C 1.46922 * 118.73852 * 53.61151 * 14 13 12 24 24 C 1.52995 * 109.47746 * 149.99692 * 3 2 1 25 25 C 1.54270 * 110.02790 * 57.16437 * 24 3 2 26 26 C 1.54890 * 104.19577 * 217.10222 * 25 24 3 27 27 C 1.54895 * 102.74592 * 37.94714 * 26 25 24 28 28 C 1.53871 * 110.03204 * 300.00466 * 24 3 2 29 29 H 1.08997 * 109.47514 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47007 * 300.00604 * 1 2 3 31 31 H 1.09008 * 109.46439 * 60.00117 * 1 2 3 32 32 H 0.96996 * 120.00113 * 0.02562 * 7 5 3 33 33 H 1.08996 * 109.47229 * 300.00105 * 8 7 5 34 34 H 1.08992 * 109.47107 * 60.00302 * 8 7 5 35 35 H 1.08998 * 109.47059 * 59.99917 * 10 9 8 36 36 H 1.08999 * 109.46830 * 180.02562 * 10 9 8 37 37 H 1.08997 * 109.46845 * 299.99746 * 10 9 8 38 38 H 1.09011 * 109.45846 * 298.70471 * 11 9 8 39 39 H 1.09002 * 109.45778 * 58.65843 * 11 9 8 40 40 H 1.08999 * 109.49588 * 301.40823 * 12 11 9 41 41 H 1.09006 * 109.49862 * 181.31747 * 12 11 9 42 42 H 1.09005 * 109.58749 * 185.57662 * 13 12 11 43 43 H 1.09003 * 109.70570 * 65.22467 * 13 12 11 44 44 H 0.97004 * 119.99924 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.58753 * 186.60282 * 23 14 13 46 46 H 1.08998 * 109.58951 * 66.17639 * 23 14 13 47 47 H 1.08993 * 110.01866 * 178.60678 * 24 3 2 48 48 H 1.08995 * 110.49077 * 335.78874 * 25 24 3 49 49 H 1.09003 * 110.48554 * 98.43313 * 25 24 3 50 50 H 1.08995 * 110.76037 * 279.63707 * 26 25 24 51 51 H 1.09001 * 110.75531 * 156.25467 * 26 25 24 52 52 H 1.08994 * 110.48570 * 203.37567 * 27 26 25 53 53 H 1.09002 * 110.48704 * 80.72903 * 27 26 25 54 54 H 1.09008 * 110.02814 * 238.56759 * 28 24 3 55 55 H 1.08998 * 110.03140 * 359.97438 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3451 1.9993 0.5137 5 6 2.2147 1.7642 -1.4209 6 8 1.9745 1.0120 -2.3415 7 7 2.6590 3.0123 -1.6687 8 6 2.8582 3.4581 -3.0499 9 6 3.3641 4.9020 -3.0518 10 6 2.3342 5.8048 -2.3697 11 6 3.5762 5.3671 -4.4943 12 6 4.0509 6.8220 -4.4984 13 6 5.3877 6.9209 -3.7570 14 7 5.2287 6.3419 -2.4161 15 6 5.5728 7.0589 -1.3012 16 1 5.5327 8.1379 -1.3195 17 6 5.9731 6.3986 -0.1477 18 7 6.3513 5.1394 -0.2077 19 14 5.9749 7.2974 1.4899 20 1 4.6549 7.1282 2.1490 21 1 7.0387 6.7365 2.3612 22 1 6.2326 8.7419 1.2615 23 6 4.6932 4.9792 -2.2940 24 6 3.3589 1.2632 0.7213 25 6 4.2868 0.2317 0.0467 26 6 5.0608 -0.4105 1.2247 27 6 3.9820 -0.5032 2.3323 28 6 3.1651 0.7958 2.1744 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8901 32 1 2.8476 3.6150 -0.9325 33 1 3.5920 2.8158 -3.5368 34 1 1.9127 3.4033 -3.5893 35 1 2.1848 5.4737 -1.3420 36 1 2.6948 6.8334 -2.3717 37 1 1.3891 5.7505 -2.9100 38 1 4.3280 4.7385 -4.9717 39 1 2.6373 5.2898 -5.0425 40 1 3.3108 7.4475 -3.9993 41 1 4.1793 7.1599 -5.5268 42 1 5.6812 7.9672 -3.6708 43 1 6.1531 6.3707 -4.3043 44 1 6.6307 4.6779 0.5985 45 1 4.5284 4.7442 -1.2424 46 1 5.4001 4.2690 -2.7228 47 1 3.8218 2.2498 0.7049 48 1 3.7010 -0.5212 -0.4805 49 1 4.9757 0.7279 -0.6368 50 1 5.8845 0.2296 1.5405 51 1 5.4227 -1.4024 0.9541 52 1 4.4484 -0.5433 3.3167 53 1 3.3468 -1.3748 2.1742 54 1 3.5347 1.5554 2.8633 55 1 2.1102 0.5995 2.3659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569724326.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:36 Heat of formation + Delta-G solvation = -98.844110 kcal Electronic energy + Delta-G solvation = -32528.095564 eV Core-core repulsion = 28563.991676 eV Total energy + Delta-G solvation = -3964.103888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.49629 -40.19931 -38.93811 -37.70091 -36.25524 -34.89331 -33.14986 -31.84997 -31.39973 -29.59932 -28.06032 -27.61444 -27.49572 -27.08588 -25.58212 -23.86636 -22.24889 -21.84871 -21.33282 -20.61053 -19.64377 -18.60021 -18.41382 -17.81271 -17.05962 -16.87115 -16.48130 -16.34601 -15.90324 -15.80262 -15.43568 -15.36664 -15.07202 -15.00903 -14.78977 -14.33290 -14.16155 -14.07284 -13.90593 -13.76909 -13.62484 -13.09523 -12.99510 -12.71257 -12.58058 -12.55691 -12.34640 -12.25733 -12.13548 -11.96802 -11.92472 -11.83903 -11.72471 -11.68891 -11.58779 -11.46379 -11.40739 -11.35705 -11.16392 -10.96696 -10.48075 -10.25506 -10.04732 -8.60061 -7.80282 -5.25180 1.48889 1.52033 1.55265 1.58957 2.12721 2.55082 2.78837 3.31405 3.51681 3.62615 3.65635 3.75524 3.85208 3.95922 4.03492 4.04224 4.06148 4.30190 4.36222 4.47813 4.51415 4.53894 4.55739 4.59119 4.64642 4.69199 4.73595 4.74590 4.80044 4.80824 4.85222 4.88249 4.97778 4.99668 5.04499 5.08923 5.11535 5.17594 5.23739 5.29453 5.30820 5.33613 5.40782 5.43618 5.47880 5.52071 5.52510 5.65435 5.74340 5.79913 6.02765 6.44775 6.53023 7.19514 7.21444 7.91724 8.44894 9.24736 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010047 B = 0.004511 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.184023 B = 6205.900845 C = 8008.666269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.367 6.367 3 C 0.087 3.913 4 H 0.108 0.892 5 C 0.489 3.511 6 O -0.573 6.573 7 N -0.712 5.712 8 C 0.143 3.857 9 C -0.091 4.091 10 C -0.118 4.118 11 C -0.095 4.095 12 C -0.123 4.123 13 C 0.136 3.864 14 N -0.603 5.603 15 C -0.258 4.258 16 H 0.062 0.938 17 C -0.039 4.039 18 N -0.926 5.926 19 Si 0.954 3.046 20 H -0.279 1.279 21 H -0.300 1.300 22 H -0.276 1.276 23 C 0.199 3.801 24 C -0.086 4.086 25 C -0.116 4.116 26 C -0.122 4.122 27 C -0.113 4.113 28 C -0.109 4.109 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.406 0.594 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.005 0.995 44 H 0.249 0.751 45 H 0.069 0.931 46 H -0.022 1.022 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.038 0.962 50 H 0.061 0.939 51 H 0.070 0.930 52 H 0.076 0.924 53 H 0.069 0.931 54 H 0.071 0.929 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.573 -6.517 2.154 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.284 6.284 3 C 0.026 3.974 4 H 0.126 0.874 5 C 0.276 3.724 6 O -0.453 6.453 7 N -0.365 5.365 8 C 0.019 3.981 9 C -0.093 4.093 10 C -0.175 4.175 11 C -0.133 4.133 12 C -0.161 4.161 13 C 0.011 3.989 14 N -0.326 5.326 15 C -0.388 4.388 16 H 0.080 0.920 17 C -0.235 4.235 18 N -0.572 5.572 19 Si 0.783 3.217 20 H -0.206 1.206 21 H -0.227 1.227 22 H -0.201 1.201 23 C 0.073 3.927 24 C -0.104 4.104 25 C -0.153 4.153 26 C -0.159 4.159 27 C -0.151 4.151 28 C -0.146 4.146 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.243 0.757 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.023 0.977 44 H 0.059 0.941 45 H 0.087 0.913 46 H -0.004 1.004 47 H 0.098 0.902 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.080 0.920 51 H 0.089 0.911 52 H 0.095 0.905 53 H 0.088 0.912 54 H 0.089 0.911 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.568 -7.291 1.622 13.770 hybrid contribution 0.641 0.847 0.807 1.334 sum -10.927 -6.444 2.429 12.916 Atomic orbital electron populations 1.23028 0.79660 1.04174 1.00393 1.87962 1.21158 1.25005 1.94280 1.22079 0.97587 0.87092 0.90682 0.87443 1.21807 0.76343 0.81323 0.92936 1.90638 1.52519 1.54653 1.47460 1.46133 1.66383 1.14295 1.09685 1.21248 0.99950 0.94362 0.82544 1.21351 0.97432 0.92836 0.97699 1.21631 0.97069 0.99786 0.99016 1.21375 1.01093 0.96576 0.94269 1.21913 0.97639 0.96420 1.00156 1.21092 0.95186 0.96655 0.86000 1.44223 1.72991 1.14295 1.01110 1.19422 1.38105 0.90633 0.90660 0.92005 1.25591 0.99145 0.97237 1.01522 1.70189 1.47652 1.11773 1.27621 0.85477 0.77132 0.78296 0.80798 1.20593 1.22653 1.20134 1.20541 0.89032 0.84404 0.98756 1.21905 0.91964 1.00277 0.96299 1.22265 0.97336 0.97873 0.97875 1.22467 0.97875 1.00468 0.95123 1.22276 0.96668 0.97639 0.98481 1.22094 1.01410 0.97779 0.93343 0.87945 0.91707 0.95086 0.75745 0.93843 0.91066 0.93997 0.92478 0.91914 0.93310 0.90425 0.91587 0.90320 0.93061 0.97714 0.94140 0.91309 1.00410 0.90167 0.91850 0.94310 0.91975 0.91099 0.90532 0.91195 0.91070 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.81 113.37 1.23 1.69 16 2 O -0.37 -9.86 8.34 -129.98 -1.08 -10.94 16 3 C 0.09 2.33 2.05 29.85 0.06 2.39 16 4 H 0.11 2.29 7.79 -2.39 -0.02 2.27 16 5 C 0.49 16.18 6.54 87.66 0.57 16.75 16 6 O -0.57 -22.86 16.51 15.97 0.26 -22.59 16 7 N -0.71 -23.01 4.96 -463.06 -2.30 -25.30 16 8 C 0.14 4.74 4.57 86.38 0.39 5.14 16 9 C -0.09 -3.11 0.53 -52.10 -0.03 -3.13 16 10 C -0.12 -3.71 7.82 71.98 0.56 -3.14 16 11 C -0.10 -2.90 4.71 30.62 0.14 -2.76 16 12 C -0.12 -3.79 5.74 30.67 0.18 -3.61 16 13 C 0.14 5.44 6.52 86.36 0.56 6.00 16 14 N -0.60 -28.47 2.43 -699.10 -1.70 -30.17 16 15 C -0.26 -13.37 9.58 84.03 0.81 -12.57 16 16 H 0.06 3.18 7.89 -2.91 -0.02 3.16 16 17 C -0.04 -2.03 4.91 84.86 0.42 -1.62 16 18 N -0.93 -51.21 11.19 21.65 0.24 -50.97 16 19 Si 0.95 42.32 29.59 68.60 2.03 44.35 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 23 C 0.20 8.86 3.73 86.36 0.32 9.18 16 24 C -0.09 -2.32 2.79 -10.07 -0.03 -2.35 16 25 C -0.12 -3.51 5.67 31.67 0.18 -3.33 16 26 C -0.12 -3.05 6.91 31.89 0.22 -2.83 16 27 C -0.11 -2.38 6.83 31.67 0.22 -2.16 16 28 C -0.11 -2.37 6.22 31.32 0.19 -2.18 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 31 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.41 12.99 6.01 -92.71 -0.56 12.43 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.04 1.32 6.87 -2.39 -0.02 1.30 16 36 H 0.06 1.99 5.97 -2.39 -0.01 1.98 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 2.03 6.34 -2.39 -0.02 2.01 16 41 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 42 H 0.05 2.01 7.93 -2.38 -0.02 1.99 16 43 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 44 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 45 H 0.07 3.33 4.94 -2.39 -0.01 3.32 16 46 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 47 H 0.08 2.42 7.93 -2.39 -0.02 2.40 16 48 H 0.06 2.08 7.12 -2.39 -0.02 2.07 16 49 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 52 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 54 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 55 H 0.08 1.51 7.42 -2.39 -0.02 1.49 16 Total: -1.00 -64.28 413.10 3.75 -60.53 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: 0.29 Total: 33.62 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 6.00 Total: 1.47 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -3.75 Total: -106.44 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.82 Total: -33.53 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -64.28 3.75 -60.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569724326.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.313 kcal (2) G-P(sol) polarization free energy of solvation -64.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds