Wall clock time and date at job start Tue Mar 31 2020 21:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42894 * 113.99987 * 2 1 4 4 H 1.09002 * 109.47396 * 32.22192 * 3 2 1 5 5 C 1.50706 * 109.47090 * 152.21975 * 3 2 1 6 6 O 1.21281 * 119.99717 * 17.11854 * 5 3 2 7 7 N 1.34776 * 119.99825 * 197.11216 * 5 3 2 8 8 C 1.46498 * 119.99569 * 185.28904 * 7 5 3 9 9 C 1.53005 * 109.47110 * 180.02562 * 8 7 5 10 10 C 1.53007 * 109.52224 * 299.92201 * 9 8 7 11 11 C 1.53039 * 109.49662 * 179.84177 * 9 8 7 12 12 C 1.53045 * 109.53629 * 178.68292 * 11 9 8 13 13 C 1.53193 * 109.31240 * 61.36410 * 12 11 9 14 14 N 1.46930 * 108.77722 * 305.36605 * 13 12 11 15 15 C 1.36932 * 120.63016 * 233.58812 * 14 13 12 16 16 H 1.08000 * 120.00184 * 153.94990 * 15 14 13 17 17 C 1.38808 * 120.00054 * 333.94389 * 15 14 13 18 18 N 1.31624 * 120.00247 * 161.61323 * 17 15 14 19 19 Si 1.86803 * 119.99916 * 341.61188 * 17 15 14 20 20 H 1.48505 * 109.47056 * 92.79696 * 19 17 15 21 21 H 1.48501 * 109.46849 * 212.79300 * 19 17 15 22 22 H 1.48499 * 109.47314 * 332.79313 * 19 17 15 23 23 C 1.46922 * 118.73664 * 53.60492 * 14 13 12 24 24 C 1.52996 * 109.47326 * 272.22125 * 3 2 1 25 25 C 1.54272 * 110.03238 * 292.96993 * 24 3 2 26 26 C 1.54963 * 104.16118 * 217.13661 * 25 24 3 27 27 C 1.54892 * 102.77743 * 37.88672 * 26 25 24 28 28 C 1.53882 * 110.03535 * 175.75260 * 24 3 2 29 29 H 1.09001 * 109.47360 * 304.89708 * 1 2 3 30 30 H 1.09004 * 109.46649 * 64.88911 * 1 2 3 31 31 H 1.08994 * 109.47078 * 184.88841 * 1 2 3 32 32 H 0.97001 * 120.00278 * 5.30023 * 7 5 3 33 33 H 1.08999 * 109.47025 * 60.00595 * 8 7 5 34 34 H 1.08998 * 109.47958 * 300.00701 * 8 7 5 35 35 H 1.09003 * 109.46314 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.47173 * 300.07628 * 10 9 8 37 37 H 1.08995 * 109.46625 * 60.08279 * 10 9 8 38 38 H 1.09002 * 109.46349 * 58.66706 * 11 9 8 39 39 H 1.08993 * 109.45150 * 298.69270 * 11 9 8 40 40 H 1.08995 * 109.49732 * 301.41888 * 12 11 9 41 41 H 1.08993 * 109.50052 * 181.31402 * 12 11 9 42 42 H 1.09000 * 109.59080 * 185.57854 * 13 12 11 43 43 H 1.09003 * 109.70361 * 65.22048 * 13 12 11 44 44 H 0.96998 * 120.00379 * 180.02562 * 18 17 15 45 45 H 1.09007 * 109.58752 * 66.18018 * 23 14 13 46 46 H 1.09001 * 109.58421 * 186.60495 * 23 14 13 47 47 H 1.09000 * 110.01554 * 54.36110 * 24 3 2 48 48 H 1.08999 * 110.48393 * 335.78676 * 25 24 3 49 49 H 1.09001 * 110.48012 * 98.42610 * 25 24 3 50 50 H 1.09003 * 110.71619 * 279.57500 * 26 25 24 51 51 H 1.08993 * 110.92123 * 156.29823 * 26 25 24 52 52 H 1.09002 * 110.48531 * 203.40958 * 27 26 25 53 53 H 1.08998 * 110.48559 * 80.76514 * 27 26 25 54 54 H 1.08998 * 110.03180 * 238.56563 * 28 24 3 55 55 H 1.08995 * 110.02661 * 0.02562 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3638 1.9910 0.5479 5 6 3.3630 1.2530 0.6622 6 8 3.9244 0.1883 0.8111 7 7 3.9489 2.3893 1.0889 8 6 5.3111 2.3537 1.6266 9 6 5.7348 3.7658 2.0361 10 6 5.6951 4.6860 0.8143 11 6 7.1564 3.7287 2.6016 12 6 7.5934 5.1455 2.9810 13 6 6.6567 5.6919 4.0630 14 7 5.2717 5.5961 3.5820 15 6 4.4573 6.6969 3.5765 16 1 3.6373 6.7586 2.8764 17 6 4.6856 7.7337 4.4708 18 7 4.1646 8.9217 4.2482 19 14 5.7323 7.4427 5.9905 20 1 7.1437 7.7976 5.6948 21 1 5.2326 8.2875 7.1048 22 1 5.6527 6.0119 6.3799 23 6 4.7771 4.2966 3.1074 24 6 2.1667 1.7941 -1.4414 25 6 3.2153 0.9363 -2.1794 26 6 3.9597 1.9467 -3.0884 27 6 4.0435 3.2114 -2.1981 28 6 2.6927 3.2402 -1.4536 29 1 -0.3634 0.5879 0.8429 30 1 -0.3633 0.4361 -0.9306 31 1 -0.3633 -1.0239 0.0876 32 1 3.4685 3.2306 1.0401 33 1 5.9928 1.9761 0.8645 34 1 5.3411 1.6989 2.4975 35 1 5.9975 5.6915 1.1069 36 1 6.3767 4.3080 0.0524 37 1 4.6818 4.7143 0.4137 38 1 7.8362 3.3283 1.8494 39 1 7.1786 3.0927 3.4865 40 1 7.5475 5.7881 2.1018 41 1 8.6144 5.1216 3.3619 42 1 6.9017 6.7345 4.2660 43 1 6.7679 5.1061 4.9755 44 1 4.3245 9.6463 4.8729 45 1 4.7357 3.5949 3.9405 46 1 3.7819 4.4185 2.6798 47 1 1.2091 1.7407 -1.9594 48 1 3.9056 0.4825 -1.4683 49 1 2.7263 0.1696 -2.7803 50 1 3.3850 2.1480 -3.9925 51 1 4.9565 1.5838 -3.3389 52 1 4.1590 4.1039 -2.8132 53 1 4.8677 3.1255 -1.4901 54 1 1.9908 3.8883 -1.9784 55 1 2.8369 3.5935 -0.4327 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569724327.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:41 Heat of formation + Delta-G solvation = -86.806122 kcal Electronic energy + Delta-G solvation = -32539.045393 eV Core-core repulsion = 28575.463512 eV Total energy + Delta-G solvation = -3963.581881 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.71984 -40.31937 -38.79753 -37.94231 -36.53348 -34.80787 -33.14229 -32.47783 -31.45940 -29.62904 -28.18548 -27.96766 -27.50372 -27.00830 -25.49193 -23.69214 -22.90573 -21.92780 -21.36919 -20.82397 -19.48360 -18.72278 -18.25923 -17.92311 -17.30270 -17.09955 -16.47235 -16.37439 -16.17996 -15.73850 -15.56430 -15.38179 -15.21226 -15.14299 -15.05687 -14.40117 -14.23966 -14.15678 -14.07936 -13.80346 -13.64257 -13.37980 -13.14645 -12.88002 -12.68676 -12.55907 -12.36917 -12.19121 -12.07556 -11.99227 -11.92415 -11.90443 -11.85035 -11.69481 -11.63161 -11.44361 -11.36679 -11.22009 -11.11154 -10.91541 -10.63306 -10.38660 -10.03329 -8.88860 -8.11790 -5.42446 1.29837 1.42453 1.49571 1.59335 1.92035 2.43511 2.97811 3.10713 3.32503 3.56192 3.59617 3.74133 3.80523 3.86721 3.89515 3.94383 4.03907 4.26562 4.31203 4.36176 4.42733 4.49481 4.51516 4.55304 4.63602 4.64515 4.67282 4.71586 4.75625 4.80257 4.82973 4.84467 4.87359 4.91567 4.97607 5.01746 5.06161 5.08797 5.12055 5.16386 5.26383 5.29387 5.33370 5.33578 5.38426 5.40701 5.48840 5.51779 5.69658 5.89474 6.05142 6.16540 6.53630 6.94596 7.21670 7.66572 8.07202 9.07773 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.003304 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.046793 B = 8472.212953 C = 8685.516912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.387 6.387 3 C 0.076 3.924 4 H 0.099 0.901 5 C 0.521 3.479 6 O -0.567 6.567 7 N -0.711 5.711 8 C 0.143 3.857 9 C -0.079 4.079 10 C -0.124 4.124 11 C -0.094 4.094 12 C -0.128 4.128 13 C 0.114 3.886 14 N -0.613 5.613 15 C -0.233 4.233 16 H 0.061 0.939 17 C -0.036 4.036 18 N -0.959 5.959 19 Si 0.944 3.056 20 H -0.279 1.279 21 H -0.319 1.319 22 H -0.264 1.264 23 C 0.159 3.841 24 C -0.100 4.100 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.123 4.123 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.407 0.593 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.027 0.973 44 H 0.259 0.741 45 H 0.023 0.977 46 H 0.057 0.943 47 H 0.102 0.898 48 H 0.049 0.951 49 H 0.067 0.933 50 H 0.078 0.922 51 H 0.062 0.938 52 H 0.074 0.926 53 H 0.059 0.941 54 H 0.086 0.914 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -15.068 -13.795 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.305 6.305 3 C 0.015 3.985 4 H 0.117 0.883 5 C 0.307 3.693 6 O -0.446 6.446 7 N -0.367 5.367 8 C 0.019 3.981 9 C -0.081 4.081 10 C -0.181 4.181 11 C -0.132 4.132 12 C -0.167 4.167 13 C -0.011 4.011 14 N -0.337 5.337 15 C -0.363 4.363 16 H 0.079 0.921 17 C -0.230 4.230 18 N -0.606 5.606 19 Si 0.775 3.225 20 H -0.207 1.207 21 H -0.249 1.249 22 H -0.189 1.189 23 C 0.034 3.966 24 C -0.119 4.119 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.163 4.163 28 C -0.161 4.161 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.247 0.753 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.076 0.924 47 H 0.120 0.880 48 H 0.067 0.933 49 H 0.085 0.915 50 H 0.097 0.903 51 H 0.081 0.919 52 H 0.093 0.907 53 H 0.077 0.923 54 H 0.105 0.895 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.631 -15.855 -13.632 20.974 hybrid contribution -0.146 0.999 1.256 1.611 sum -1.777 -14.857 -12.377 19.418 Atomic orbital electron populations 1.23101 0.78901 1.04107 1.01408 1.88000 1.21596 1.25814 1.95106 1.22237 0.92341 0.86756 0.97167 0.88295 1.20611 0.87640 0.83550 0.77451 1.90672 1.66236 1.30659 1.57056 1.46233 1.16958 1.10127 1.63404 1.21279 0.82458 0.96018 0.98351 1.21143 0.96935 0.93463 0.96522 1.21724 1.01426 0.99194 0.95768 1.21382 0.94624 0.96276 1.00938 1.21946 0.98468 0.97150 0.99104 1.21459 0.84995 0.98657 0.95990 1.44374 1.08023 1.06024 1.75239 1.18877 1.10265 0.94606 1.12545 0.92098 1.25774 1.00684 0.95739 1.00822 1.69922 1.50825 1.01640 1.38261 0.86010 0.78215 0.77515 0.80772 1.20654 1.24854 1.18858 1.21070 0.95873 0.85391 0.94303 1.22202 1.01205 0.95484 0.93031 1.22403 0.97261 0.97696 0.98335 1.22490 1.00200 0.94872 0.98118 1.22371 0.97074 0.98314 0.98519 1.22326 0.97818 0.94939 1.01037 0.92972 0.92120 0.88414 0.75291 0.90972 0.92348 0.93363 0.91756 0.92918 0.89915 0.91934 0.91804 0.90435 0.93557 0.95482 0.93240 0.95905 0.92443 0.87975 0.93272 0.91456 0.90315 0.91932 0.90740 0.92254 0.89511 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.85 113.37 1.23 1.54 16 2 O -0.39 -9.23 9.78 -130.52 -1.28 -10.51 16 3 C 0.08 1.62 2.22 29.85 0.07 1.69 16 4 H 0.10 1.71 7.74 -2.39 -0.02 1.69 16 5 C 0.52 14.00 5.57 87.66 0.49 14.49 16 6 O -0.57 -19.95 15.70 15.43 0.24 -19.71 16 7 N -0.71 -16.96 4.34 -463.05 -2.01 -18.97 16 8 C 0.14 3.56 4.58 86.38 0.40 3.96 16 9 C -0.08 -2.13 0.53 -52.10 -0.03 -2.15 16 10 C -0.12 -3.31 7.81 71.98 0.56 -2.74 16 11 C -0.09 -2.43 4.71 30.62 0.14 -2.29 16 12 C -0.13 -3.92 5.74 30.67 0.18 -3.74 16 13 C 0.11 4.57 4.17 86.36 0.36 4.93 16 14 N -0.61 -26.65 2.24 -699.09 -1.57 -28.21 16 15 C -0.23 -12.41 10.08 84.03 0.85 -11.57 16 16 H 0.06 3.48 8.05 -2.91 -0.02 3.46 16 17 C -0.04 -2.04 5.29 84.86 0.45 -1.59 16 18 N -0.96 -58.80 13.97 21.65 0.30 -58.50 16 19 Si 0.94 46.16 24.27 68.60 1.66 47.82 16 20 H -0.28 -12.99 6.61 99.48 0.66 -12.34 16 21 H -0.32 -16.11 7.11 99.48 0.71 -15.41 16 22 H -0.26 -12.41 6.37 99.48 0.63 -11.78 16 23 C 0.16 5.53 4.93 86.36 0.43 5.96 16 24 C -0.10 -1.74 2.91 -10.07 -0.03 -1.77 16 25 C -0.12 -2.40 6.02 31.70 0.19 -2.21 16 26 C -0.12 -2.00 6.91 31.91 0.22 -1.78 16 27 C -0.13 -2.15 6.83 31.67 0.22 -1.93 16 28 C -0.12 -2.00 5.93 31.32 0.19 -1.81 16 29 H 0.05 0.69 7.97 -2.39 -0.02 0.67 16 30 H 0.06 0.68 7.72 -2.38 -0.02 0.66 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.41 8.95 3.97 -92.71 -0.37 8.58 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.61 5.97 -2.39 -0.01 1.59 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 1.32 6.59 -2.39 -0.02 1.31 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 2.04 6.33 -2.39 -0.02 2.03 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 2.10 4.16 -2.39 -0.01 2.09 16 43 H 0.03 1.09 6.94 -2.39 -0.02 1.07 16 44 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 45 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.06 1.98 6.83 -2.39 -0.02 1.96 16 47 H 0.10 1.42 7.71 -2.39 -0.02 1.40 16 48 H 0.05 1.30 5.81 -2.39 -0.01 1.29 16 49 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 50 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 54 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 55 H 0.06 1.06 4.50 -2.39 -0.01 1.05 16 Total: -1.00 -70.04 398.04 3.63 -66.41 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.38 Total: 22.70 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.90 Total: -1.02 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -3.27 Total: -105.68 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -1.03 Total: -30.22 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.66 Total: 47.82 kcal Total: -70.04 3.63 -66.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569724327.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.399 kcal (2) G-P(sol) polarization free energy of solvation -70.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds