Wall clock time and date at job start Tue Mar 31 2020 21:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47404 * 2 1 4 4 C 1.52998 * 109.47153 * 120.00304 * 2 1 3 5 5 C 1.53000 * 109.47214 * 59.99579 * 4 2 1 6 6 C 1.52997 * 109.47217 * 60.00376 * 5 4 2 7 7 C 1.50696 * 109.47242 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00123 * 119.99913 * 7 6 5 9 9 N 1.34780 * 120.00108 * 299.99569 * 7 6 5 10 10 C 1.46499 * 119.99956 * 174.63653 * 9 7 6 11 11 C 1.53000 * 109.46320 * 302.48761 * 10 9 7 12 12 O 1.42895 * 109.47024 * 302.90471 * 11 10 9 13 13 C 1.53042 * 109.45870 * 182.52627 * 10 9 7 14 14 C 1.53184 * 109.31435 * 301.34947 * 13 10 9 15 15 N 1.46930 * 108.77622 * 305.36121 * 14 13 10 16 16 C 1.36936 * 120.63068 * 233.63480 * 15 14 13 17 17 H 1.07997 * 119.99729 * 148.89284 * 16 15 14 18 18 C 1.38808 * 120.00140 * 328.88600 * 16 15 14 19 19 N 1.31618 * 120.00103 * 161.57489 * 18 16 15 20 20 Si 1.86801 * 119.99955 * 341.58213 * 18 16 15 21 21 H 1.48497 * 109.47322 * 91.94390 * 20 18 16 22 22 H 1.48502 * 109.46849 * 211.94212 * 20 18 16 23 23 H 1.48500 * 109.47263 * 331.94267 * 20 18 16 24 24 C 1.46923 * 118.73532 * 53.60875 * 15 14 13 25 25 C 1.53037 * 109.45806 * 62.46069 * 10 9 7 26 26 C 1.53000 * 109.47068 * 299.99811 * 6 5 4 27 27 C 1.53000 * 109.46947 * 60.00023 * 26 6 5 28 28 H 1.09004 * 109.47049 * 300.00328 * 1 2 3 29 29 H 1.09007 * 109.47210 * 59.99721 * 1 2 3 30 30 H 1.08998 * 109.47429 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47012 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46810 * 299.99728 * 3 2 1 33 33 H 1.08994 * 109.47134 * 59.99775 * 3 2 1 34 34 H 1.09001 * 109.47568 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.47139 * 299.99503 * 4 2 1 36 36 H 1.09007 * 109.47165 * 179.97438 * 5 4 2 37 37 H 1.08995 * 109.47364 * 300.00264 * 5 4 2 38 38 H 1.08996 * 109.47555 * 59.99811 * 6 5 4 39 39 H 0.97003 * 119.99851 * 354.64272 * 9 7 6 40 40 H 1.09000 * 109.46756 * 62.89678 * 11 10 9 41 41 H 1.08994 * 109.47397 * 182.89978 * 11 10 9 42 42 H 0.96701 * 114.00000 * 180.02562 * 12 11 10 43 43 H 1.09008 * 109.48987 * 61.29795 * 13 10 9 44 44 H 1.09004 * 109.49732 * 181.39070 * 13 10 9 45 45 H 1.09000 * 109.58887 * 185.57517 * 14 13 10 46 46 H 1.08997 * 109.58700 * 65.14970 * 14 13 10 47 47 H 0.97001 * 120.00340 * 179.97438 * 19 18 16 48 48 H 1.08999 * 109.58492 * 186.60671 * 24 15 14 49 49 H 1.09006 * 109.70248 * 66.25314 * 24 15 14 50 50 H 1.09008 * 109.49782 * 178.60361 * 25 10 9 51 51 H 1.08995 * 109.50064 * 298.70414 * 25 10 9 52 52 H 1.09002 * 109.47329 * 300.00470 * 26 6 5 53 53 H 1.08994 * 109.47528 * 179.97438 * 26 6 5 54 54 H 1.09007 * 109.47165 * 180.02562 * 27 26 6 55 55 H 1.08995 * 109.47364 * 59.99998 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0399 -2.8851 0.0000 7 6 1.5380 -4.3060 0.0003 8 8 0.8407 -4.7031 -0.9091 9 7 1.8641 -5.1357 1.0112 10 6 1.2823 -6.4788 1.0731 11 6 -0.2438 -6.3726 1.0978 12 8 -0.6474 -5.5670 2.2069 13 6 1.7645 -7.1852 2.3422 14 6 3.2946 -7.2591 2.3306 15 7 3.7276 -7.9003 1.0816 16 6 4.5625 -8.9854 1.1073 17 1 4.4939 -9.7379 0.3356 18 6 5.4969 -9.1183 2.1252 19 7 6.0399 -10.2917 2.3710 20 14 5.9835 -7.6316 3.1462 21 1 5.1148 -7.5505 4.3478 22 1 7.4012 -7.7635 3.5682 23 1 5.8214 -6.3989 2.3341 24 6 3.2474 -7.3554 -0.1955 25 6 1.7178 -7.2802 -0.1557 26 6 1.5299 -2.1638 -1.2493 27 6 2.0399 -0.7214 -1.2493 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1392 36 1 1.8936 -2.6778 2.1390 37 1 0.4399 -2.1638 1.2492 38 1 3.1298 -2.8851 -0.0001 39 1 2.4840 -4.8435 1.6977 40 1 -0.5912 -5.9154 0.1713 41 1 -0.6758 -7.3684 1.1958 42 1 -1.6049 -5.4566 2.2851 43 1 1.4339 -6.6262 3.2177 44 1 1.3517 -8.1935 2.3766 45 1 3.6385 -7.8472 3.1815 46 1 3.7095 -6.2528 2.3878 47 1 6.6931 -10.3845 3.0821 48 1 3.5601 -8.0069 -1.0115 49 1 3.6584 -6.3572 -0.3470 50 1 1.3055 -8.2877 -0.0979 51 1 1.3541 -6.7890 -1.0581 52 1 0.4398 -2.1637 -1.2493 53 1 1.8935 -2.6773 -2.1392 54 1 1.6762 -0.2073 -2.1391 55 1 3.1299 -0.7214 -1.2493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570499302.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:43 Heat of formation + Delta-G solvation = -109.644406 kcal Electronic energy + Delta-G solvation = -32604.480536 eV Core-core repulsion = 28639.908313 eV Total energy + Delta-G solvation = -3964.572224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -41.84005 -40.36353 -38.78559 -37.50786 -35.64694 -34.46251 -33.71977 -32.16201 -32.04224 -31.54269 -28.57858 -28.15191 -27.65243 -25.43092 -24.51732 -23.64689 -23.48044 -22.57662 -21.23283 -20.22402 -19.30884 -18.90588 -18.26957 -18.03375 -17.24324 -16.56625 -16.35094 -16.08463 -15.87739 -15.69185 -15.46685 -15.36915 -15.08249 -14.85092 -14.75293 -14.36139 -14.18072 -14.13289 -13.75833 -13.63540 -13.48077 -13.31956 -13.25092 -13.13869 -12.79543 -12.75699 -12.53931 -12.43284 -12.29685 -12.17394 -12.12075 -11.86555 -11.83338 -11.70282 -11.54274 -11.41604 -11.27046 -11.07487 -10.95300 -10.83472 -10.72270 -10.24057 -9.91223 -8.88800 -8.17301 -5.53943 1.30196 1.41397 1.50930 1.77044 2.27140 2.41557 3.06382 3.20311 3.38235 3.58968 3.68867 3.77794 3.81862 3.90615 4.10144 4.14045 4.17300 4.24118 4.32461 4.40274 4.43228 4.48103 4.50530 4.58592 4.61719 4.62405 4.63824 4.74249 4.77101 4.87866 4.88497 4.93869 4.95934 4.98348 5.06232 5.09279 5.10442 5.12256 5.14632 5.17567 5.19464 5.24594 5.29159 5.29788 5.38341 5.51765 5.55110 5.66084 5.69993 5.88349 6.12825 6.68573 6.88608 6.91116 7.36897 7.59849 8.02094 9.02820 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.003545 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.370499 B = 7896.420621 C = 8664.719514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.104 4.104 5 C -0.102 4.102 6 C -0.102 4.102 7 C 0.521 3.479 8 O -0.572 6.572 9 N -0.703 5.703 10 C 0.193 3.807 11 C 0.077 3.923 12 O -0.573 6.573 13 C -0.121 4.121 14 C 0.124 3.876 15 N -0.615 5.615 16 C -0.252 4.252 17 H 0.045 0.955 18 C -0.033 4.033 19 N -0.959 5.959 20 Si 0.951 3.049 21 H -0.269 1.269 22 H -0.312 1.312 23 H -0.258 1.258 24 C 0.157 3.843 25 C -0.133 4.133 26 C -0.092 4.092 27 C -0.104 4.104 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.402 0.598 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.392 0.608 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.036 0.964 47 H 0.262 0.738 48 H 0.048 0.952 49 H 0.026 0.974 50 H 0.063 0.937 51 H 0.081 0.919 52 H 0.062 0.938 53 H 0.052 0.948 54 H 0.069 0.931 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 23.969 -1.641 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 C -0.196 4.196 4 C -0.142 4.142 5 C -0.139 4.139 6 C -0.124 4.124 7 C 0.309 3.691 8 O -0.452 6.452 9 N -0.354 5.354 10 C 0.107 3.893 11 C -0.002 4.002 12 O -0.380 6.380 13 C -0.161 4.161 14 C -0.001 4.001 15 N -0.340 5.340 16 C -0.382 4.382 17 H 0.063 0.937 18 C -0.228 4.228 19 N -0.604 5.604 20 Si 0.779 3.221 21 H -0.195 1.195 22 H -0.241 1.241 23 H -0.182 1.182 24 C 0.032 3.968 25 C -0.173 4.173 26 C -0.130 4.130 27 C -0.142 4.142 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.238 0.762 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.240 0.760 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.044 0.956 50 H 0.082 0.918 51 H 0.099 0.901 52 H 0.081 0.919 53 H 0.070 0.930 54 H 0.088 0.912 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.566 23.627 -2.105 27.326 hybrid contribution 0.388 -0.327 0.558 0.754 sum -13.178 23.300 -1.547 26.813 Atomic orbital electron populations 1.21954 0.94721 1.01571 1.01803 1.20549 0.95697 0.95485 0.94774 1.21833 1.01049 0.94663 1.02043 1.21595 1.00860 0.93899 0.97799 1.21477 1.01207 0.96111 0.95149 1.21366 1.02087 0.90082 0.98817 1.21009 0.79386 0.88051 0.80642 1.90579 1.40212 1.77856 1.36582 1.45969 1.47535 1.14016 1.27837 1.20155 0.91517 0.82306 0.95346 1.22404 0.93619 0.94626 0.89531 1.86405 1.29283 1.73004 1.49312 1.22098 0.96059 1.00776 0.97142 1.21369 0.94065 0.95866 0.88765 1.44408 1.54377 1.33908 1.01281 1.18807 1.10804 0.97514 1.11046 0.93694 1.26031 0.97245 0.99019 1.00467 1.69958 1.32510 1.24244 1.33730 0.85830 0.75874 0.81400 0.79035 1.19546 1.24077 1.18182 1.20855 0.92461 0.96128 0.87336 1.22217 0.97091 0.99593 0.98412 1.21283 1.00958 0.95360 0.95441 1.21605 1.00701 0.93953 0.97918 0.92299 0.92631 0.93052 0.92517 0.92434 0.92212 0.91432 0.90792 0.91375 0.91617 0.88415 0.76189 0.92639 0.92551 0.75952 0.89390 0.91204 0.92913 0.94631 0.92896 0.93365 0.95595 0.91827 0.90104 0.91927 0.92953 0.91247 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.78 71.98 0.56 -1.42 16 2 C -0.07 -0.87 0.77 -52.18 -0.04 -0.91 16 3 C -0.14 -1.56 8.47 71.98 0.61 -0.95 16 4 C -0.10 -1.45 4.73 30.59 0.14 -1.30 16 5 C -0.10 -1.75 4.83 30.59 0.15 -1.60 16 6 C -0.10 -2.14 2.52 -11.54 -0.03 -2.17 16 7 C 0.52 14.25 6.56 87.66 0.58 14.82 16 8 O -0.57 -18.69 12.26 -3.03 -0.04 -18.73 16 9 N -0.70 -19.44 3.79 -422.80 -1.60 -21.05 16 10 C 0.19 5.84 0.44 3.63 0.00 5.84 16 11 C 0.08 2.01 5.64 71.98 0.41 2.41 16 12 O -0.57 -12.97 12.89 -148.98 -1.92 -14.89 16 13 C -0.12 -3.99 4.86 30.67 0.15 -3.84 16 14 C 0.12 5.02 3.93 86.36 0.34 5.36 16 15 N -0.61 -28.71 2.72 -699.11 -1.90 -30.61 16 16 C -0.25 -14.38 10.01 84.03 0.84 -13.54 16 17 H 0.05 2.85 8.06 -2.91 -0.02 2.82 16 18 C -0.03 -1.91 5.24 84.86 0.44 -1.46 16 19 N -0.96 -60.35 13.97 21.65 0.30 -60.05 16 20 Si 0.95 45.62 24.37 68.60 1.67 47.29 16 21 H -0.27 -12.03 6.65 99.48 0.66 -11.37 16 22 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 23 H -0.26 -11.64 6.67 99.48 0.66 -10.98 16 24 C 0.16 6.38 6.26 86.36 0.54 6.92 16 25 C -0.13 -4.60 4.70 30.67 0.14 -4.45 16 26 C -0.09 -1.87 4.22 30.59 0.13 -1.74 16 27 C -0.10 -1.61 4.73 30.60 0.14 -1.46 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.72 8.14 -2.38 -0.02 0.71 16 30 H 0.05 0.84 4.81 -2.39 -0.01 0.83 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.17 7.69 -2.38 -0.02 1.15 16 37 H 0.07 1.22 6.43 -2.39 -0.02 1.21 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.40 10.46 6.79 -92.71 -0.63 9.83 16 40 H 0.06 1.58 6.26 -2.39 -0.01 1.56 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.39 5.42 9.12 -74.06 -0.68 4.75 16 43 H 0.09 2.57 7.72 -2.38 -0.02 2.55 16 44 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 45 H 0.05 2.37 4.82 -2.39 -0.01 2.36 16 46 H 0.04 1.34 5.77 -2.39 -0.01 1.33 16 47 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 48 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 49 H 0.03 1.03 7.74 -2.38 -0.02 1.01 16 50 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 51 H 0.08 2.81 6.21 -2.39 -0.01 2.79 16 52 H 0.06 1.38 6.39 -2.39 -0.02 1.36 16 53 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 54 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 55 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -69.11 394.11 1.12 -67.99 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -0.51 Total: 29.53 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 5.11 Total: 0.51 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -3.20 Total: -111.70 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.96 Total: -33.62 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.67 Total: 47.29 kcal Total: -69.11 1.12 -67.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570499302.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.653 kcal (2) G-P(sol) polarization free energy of solvation -69.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds