Wall clock time and date at job start Tue Mar 31 2020 20:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00276 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47236 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.43550 * 54.29785 * 11 10 9 13 13 C 1.54272 * 110.48686 * 291.75556 * 11 10 9 14 14 C 1.53872 * 106.59871 * 217.71344 * 13 11 10 15 15 C 1.54259 * 106.60003 * 0.02562 * 14 13 11 16 16 H 1.09000 * 110.48671 * 264.80334 * 15 14 13 17 17 N 1.46500 * 110.48710 * 142.28843 * 15 14 13 18 18 C 1.34776 * 119.99912 * 86.45489 * 17 15 14 19 19 O 1.21279 * 120.00226 * 359.97438 * 18 17 15 20 20 C 1.50700 * 119.99919 * 180.02562 * 18 17 15 21 21 C 1.52998 * 109.46905 * 179.97438 * 20 18 17 22 22 C 1.53006 * 109.47129 * 179.97438 * 21 20 18 23 23 C 1.52995 * 109.47359 * 179.97438 * 22 21 20 24 24 C 1.53178 * 109.54734 * 294.82828 * 23 22 21 25 25 C 1.53111 * 109.15762 * 183.23887 * 24 23 22 26 26 O 1.42906 * 109.48235 * 57.47223 * 25 24 23 27 27 C 1.42903 * 114.09988 * 298.88409 * 26 25 24 28 28 C 1.53093 * 109.40961 * 61.16532 * 27 26 25 29 29 C 1.54888 * 110.48399 * 176.84157 * 11 10 9 30 30 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 33 33 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 34 34 H 1.09000 * 110.02914 * 336.99956 * 13 11 10 35 35 H 1.08995 * 110.02908 * 98.37603 * 13 11 10 36 36 H 1.09001 * 110.03083 * 119.29016 * 14 13 11 37 37 H 1.08999 * 110.02861 * 240.66310 * 14 13 11 38 38 H 0.96999 * 119.99808 * 266.45476 * 17 15 14 39 39 H 1.09002 * 109.47040 * 299.99617 * 20 18 17 40 40 H 1.08995 * 109.47073 * 60.00008 * 20 18 17 41 41 H 1.09002 * 109.47086 * 299.99745 * 21 20 18 42 42 H 1.08997 * 109.47812 * 59.99929 * 21 20 18 43 43 H 1.08988 * 109.47113 * 300.00129 * 22 21 20 44 44 H 1.09003 * 109.46638 * 59.99938 * 22 21 20 45 45 H 1.09005 * 109.54331 * 55.00513 * 23 22 21 46 46 H 1.08996 * 109.51836 * 303.05248 * 24 23 22 47 47 H 1.09001 * 109.52506 * 63.24335 * 24 23 22 48 48 H 1.09004 * 109.40203 * 297.49178 * 25 24 23 49 49 H 1.08995 * 109.49072 * 177.50632 * 25 24 23 50 50 H 1.08996 * 109.47930 * 301.18268 * 27 26 25 51 51 H 1.08993 * 109.48852 * 181.15143 * 27 26 25 52 52 H 1.09006 * 109.51627 * 182.48406 * 28 27 26 53 53 H 1.09000 * 109.57720 * 62.32552 * 28 27 26 54 54 H 1.09006 * 110.75691 * 274.92986 * 29 11 10 55 55 H 1.09001 * 110.76106 * 38.30683 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8198 -0.0001 12 1 0.3634 -4.7214 -0.8298 13 6 0.3049 -4.8823 1.3418 14 6 0.1304 -6.3735 1.6790 15 6 0.7895 -7.1650 0.5306 16 1 0.0450 -7.4499 -0.2128 17 7 1.4722 -8.3518 1.0518 18 6 0.7889 -9.5005 1.2254 19 8 -0.3913 -9.5515 0.9506 20 6 1.4910 -10.7212 1.7620 21 6 0.4960 -11.8791 1.8621 22 6 1.2090 -13.1186 2.4064 23 6 0.2138 -14.2763 2.5071 24 6 -0.8584 -13.9414 3.5486 25 6 -1.8020 -15.1374 3.7008 26 8 -1.0493 -16.2943 4.0714 27 6 -0.0646 -16.6821 3.1111 28 6 0.9500 -15.5490 2.9369 29 6 1.8123 -6.1732 -0.0801 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3881 0.0005 32 1 2.6845 -3.7147 -0.8894 33 1 2.6845 -3.7147 0.8905 34 1 0.8846 -4.3885 2.1217 35 1 -0.6697 -4.4046 1.2423 36 1 0.6253 -6.6033 2.6226 37 1 -0.9293 -6.6200 1.7438 38 1 2.4160 -8.3109 1.2719 39 1 2.3040 -10.9974 1.0904 40 1 1.8947 -10.5029 2.7506 41 1 -0.3167 -11.6027 2.5339 42 1 0.0919 -12.0975 0.8737 43 1 2.0213 -13.3948 1.7343 44 1 1.6133 -12.9005 3.3948 45 1 -0.2574 -14.4376 1.5375 46 1 -0.3825 -13.7302 4.5062 47 1 -1.4239 -13.0688 3.2215 48 1 -2.3089 -15.3216 2.7536 49 1 -2.5408 -14.9218 4.4726 50 1 -0.5489 -16.8864 2.1563 51 1 0.4482 -17.5791 3.4581 52 1 1.6767 -15.8251 2.1727 53 1 1.4644 -15.3709 3.8812 54 1 2.0336 -6.4317 -1.1157 55 1 2.7247 -6.1458 0.5158 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571536664.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:51 Heat of formation + Delta-G solvation = -138.816430 kcal Electronic energy + Delta-G solvation = -28631.141502 eV Core-core repulsion = 24665.304284 eV Total energy + Delta-G solvation = -3965.837218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.02794 -40.35870 -39.24773 -36.85353 -36.40188 -34.77408 -33.62786 -32.86267 -31.98942 -30.16438 -29.61416 -28.30300 -26.20379 -24.98220 -24.39172 -23.91056 -22.39602 -21.66071 -21.28598 -20.90807 -20.46664 -19.09123 -17.97867 -17.41235 -17.02803 -16.99451 -16.75253 -16.67321 -16.50152 -15.80679 -15.56956 -15.37840 -15.12654 -15.00602 -14.79101 -14.56077 -14.53476 -14.19346 -13.83052 -13.43334 -13.32857 -13.25171 -12.93642 -12.74725 -12.73312 -12.65772 -12.53846 -12.35511 -12.21845 -12.20513 -12.07529 -11.81973 -11.77609 -11.71920 -11.59354 -11.50270 -11.34042 -11.16417 -11.14171 -10.90156 -10.80870 -10.39433 -10.01518 -8.97806 -7.93897 -5.22557 1.47480 1.50773 1.56952 1.71640 2.25354 2.57435 2.98568 3.39415 3.55114 3.61952 3.69179 3.77672 3.84171 3.88735 3.98560 4.10198 4.17972 4.19164 4.25188 4.33160 4.38029 4.49384 4.49772 4.52848 4.54197 4.58577 4.66028 4.70159 4.74398 4.78210 4.79095 4.80094 4.86632 4.91203 4.96251 5.02187 5.03905 5.10595 5.14909 5.15506 5.18620 5.20843 5.24010 5.31900 5.37760 5.46701 5.48917 5.54142 5.54648 5.63625 6.27915 6.28185 6.65332 7.34343 7.35594 8.12224 8.34659 9.29626 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.042945 B = 0.001342 C = 0.001322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.840668 B =20855.848937 C =21173.745715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.161 3.839 11 C -0.091 4.091 12 H 0.063 0.937 13 C -0.108 4.108 14 C -0.122 4.122 15 C 0.147 3.853 16 H 0.073 0.927 17 N -0.712 5.712 18 C 0.504 3.496 19 O -0.590 6.590 20 C -0.132 4.132 21 C -0.102 4.102 22 C -0.104 4.104 23 C -0.091 4.091 24 C -0.151 4.151 25 C 0.055 3.945 26 O -0.408 6.408 27 C 0.052 3.948 28 C -0.146 4.146 29 C -0.104 4.104 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.417 0.583 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.052 0.948 49 H 0.096 0.904 50 H 0.053 0.947 51 H 0.103 0.897 52 H 0.088 0.912 53 H 0.069 0.931 54 H 0.084 0.916 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.816 -35.381 6.122 36.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.095 0.905 9 N -0.389 5.389 10 C 0.034 3.966 11 C -0.111 4.111 12 H 0.082 0.918 13 C -0.146 4.146 14 C -0.161 4.161 15 C 0.042 3.958 16 H 0.091 0.909 17 N -0.364 5.364 18 C 0.293 3.707 19 O -0.471 6.471 20 C -0.172 4.172 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.109 4.109 24 C -0.189 4.189 25 C -0.021 4.021 26 O -0.327 6.327 27 C -0.024 4.024 28 C -0.184 4.184 29 C -0.142 4.142 30 H 0.059 0.941 31 H 0.204 0.796 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.254 0.746 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.070 0.930 49 H 0.115 0.885 50 H 0.071 0.929 51 H 0.121 0.879 52 H 0.107 0.893 53 H 0.088 0.912 54 H 0.103 0.897 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.128 -35.424 6.099 36.309 hybrid contribution -0.142 1.664 -0.224 1.685 sum 4.986 -33.760 5.875 34.628 Atomic orbital electron populations 1.69822 1.06699 1.26085 1.59554 1.25584 0.96374 1.01179 1.03746 0.85199 0.77179 0.79068 0.78242 1.20317 1.22257 1.20294 1.19642 0.91567 0.85468 1.41225 0.90538 1.42588 1.05634 1.01283 1.89363 1.20851 0.93604 0.84426 0.97683 1.21988 0.97076 0.94454 0.97539 0.91803 1.22007 0.99708 0.95763 0.97129 1.22433 1.00530 0.94067 0.99090 1.21635 0.94781 0.84552 0.94882 0.90918 1.46018 1.14357 1.10035 1.65994 1.21503 0.87030 0.85449 0.76720 1.90696 1.18216 1.85470 1.52687 1.21737 0.99897 0.91187 1.04373 1.21326 0.97632 0.93832 1.01267 1.21567 0.97718 0.92898 1.01976 1.21212 0.96066 0.95229 0.98440 1.22271 0.98108 0.98458 1.00022 1.22680 0.93552 0.84907 1.00979 1.87899 1.51571 1.46455 1.46810 1.22756 0.89412 0.97753 0.92487 1.22216 0.98540 0.94829 1.02789 1.22644 0.97865 0.91577 1.02145 0.94088 0.79569 0.96084 0.95762 0.92357 0.93643 0.90733 0.92924 0.74565 0.86315 0.86687 0.92774 0.92913 0.90299 0.91075 0.91437 0.91383 0.90848 0.92989 0.88542 0.92871 0.87939 0.89345 0.91239 0.89712 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 3 Si 0.97 46.29 29.55 68.60 2.03 48.31 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.25 -13.92 9.99 84.04 0.84 -13.08 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.75 -38.25 5.46 -343.44 -1.88 -40.13 16 10 C 0.16 6.24 5.58 86.38 0.48 6.72 16 11 C -0.09 -2.84 2.90 -9.72 -0.03 -2.87 16 12 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 13 C -0.11 -3.39 6.14 31.32 0.19 -3.20 16 14 C -0.12 -3.17 6.53 31.32 0.20 -2.97 16 15 C 0.15 3.33 3.15 46.11 0.15 3.47 16 16 H 0.07 1.96 7.67 -2.39 -0.02 1.95 16 17 N -0.71 -11.89 5.11 -437.26 -2.24 -14.12 16 18 C 0.50 9.84 7.82 87.66 0.69 10.53 16 19 O -0.59 -17.48 15.69 -3.03 -0.05 -17.53 16 20 C -0.13 -1.38 5.70 29.85 0.17 -1.21 16 21 C -0.10 -1.32 4.26 30.60 0.13 -1.19 16 22 C -0.10 -0.87 4.69 30.59 0.14 -0.72 16 23 C -0.09 -0.92 2.27 -10.68 -0.02 -0.94 16 24 C -0.15 -1.83 5.10 30.69 0.16 -1.67 16 25 C 0.06 0.72 6.84 72.02 0.49 1.22 16 26 O -0.41 -6.56 10.77 -148.98 -1.60 -8.16 16 27 C 0.05 0.55 6.84 72.01 0.49 1.04 16 28 C -0.15 -1.25 5.43 30.68 0.17 -1.08 16 29 C -0.10 -2.26 5.94 31.93 0.19 -2.07 16 30 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.37 20.51 7.57 -92.71 -0.70 19.81 16 32 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.02 0.93 8.01 -2.38 -0.02 0.91 16 34 H 0.06 1.96 7.74 -2.39 -0.02 1.94 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.75 8.04 -2.39 -0.02 1.73 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.42 4.09 8.54 -92.71 -0.79 3.30 16 39 H 0.12 0.65 8.14 -2.39 -0.02 0.64 16 40 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.05 0.90 6.61 -2.39 -0.02 0.88 16 42 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 43 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.07 0.96 6.74 -2.39 -0.02 0.95 16 48 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 49 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 51 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 53 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 54 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 55 H 0.09 1.70 7.94 -2.39 -0.02 1.68 16 Total: -1.00 -73.72 427.17 0.81 -72.91 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -0.64 Total: 30.69 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 4.91 Total: -12.00 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -3.83 Total: -114.23 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -1.65 Total: -25.69 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -73.72 0.81 -72.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571536664.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.903 kcal (2) G-P(sol) polarization free energy of solvation -73.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds