Wall clock time and date at job start Tue Mar 31 2020 20:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.09006 * 110.43171 * 305.69621 * 11 10 9 13 13 C 1.54881 * 110.48896 * 68.24079 * 11 10 9 14 14 C 1.55032 * 102.68502 * 156.51815 * 13 11 10 15 15 C 1.54269 * 104.27833 * 322.23515 * 14 13 11 16 16 H 1.09001 * 110.03963 * 142.80122 * 15 14 13 17 17 N 1.46508 * 110.02998 * 264.23564 * 15 14 13 18 18 C 1.34780 * 119.99147 * 272.16350 * 17 15 14 19 19 O 1.21273 * 120.00809 * 0.02562 * 18 17 15 20 20 C 1.50699 * 119.99373 * 180.02562 * 18 17 15 21 21 C 1.53004 * 109.47046 * 179.97438 * 20 18 17 22 22 C 1.53001 * 109.47034 * 180.02562 * 21 20 18 23 23 C 1.52995 * 109.47023 * 180.02562 * 22 21 20 24 24 C 1.53179 * 109.54228 * 294.55496 * 23 22 21 25 25 C 1.53095 * 109.16137 * 183.15161 * 24 23 22 26 26 O 1.42903 * 109.41672 * 57.61115 * 25 24 23 27 27 C 1.42901 * 114.09619 * 298.84297 * 26 25 24 28 28 C 1.53088 * 109.42024 * 61.15494 * 27 26 25 29 29 C 1.53876 * 106.60089 * 23.51415 * 15 14 13 30 30 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 33 33 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 34 34 H 1.09004 * 110.75541 * 274.93172 * 13 11 10 35 35 H 1.08994 * 110.75980 * 38.30785 * 13 11 10 36 36 H 1.08995 * 110.52567 * 203.49052 * 14 13 11 37 37 H 1.09002 * 110.36688 * 80.89768 * 14 13 11 38 38 H 0.96995 * 120.00126 * 92.16324 * 17 15 14 39 39 H 1.09002 * 109.47731 * 300.00045 * 20 18 17 40 40 H 1.09004 * 109.47329 * 60.00231 * 20 18 17 41 41 H 1.08995 * 109.47056 * 299.99918 * 21 20 18 42 42 H 1.08995 * 109.46838 * 60.00161 * 21 20 18 43 43 H 1.09003 * 109.47352 * 299.99620 * 22 21 20 44 44 H 1.08995 * 109.47225 * 60.00339 * 22 21 20 45 45 H 1.09006 * 109.54780 * 54.82269 * 23 22 21 46 46 H 1.08995 * 109.52678 * 303.05608 * 24 23 22 47 47 H 1.09000 * 109.52181 * 63.25056 * 24 23 22 48 48 H 1.09004 * 109.48523 * 297.62518 * 25 24 23 49 49 H 1.09008 * 109.48019 * 177.58996 * 25 24 23 50 50 H 1.09008 * 109.47803 * 301.17061 * 27 26 25 51 51 H 1.09002 * 109.49436 * 181.14901 * 27 26 25 52 52 H 1.08992 * 109.52879 * 182.48625 * 28 27 26 53 53 H 1.08998 * 109.51889 * 62.29306 * 28 27 26 54 54 H 1.09001 * 110.03595 * 240.72276 * 29 15 14 55 55 H 1.09001 * 110.03522 * 119.28528 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 6 5.6163 -2.1913 0.0170 12 1 5.8852 -1.5373 -0.8125 13 6 6.0449 -1.5611 1.3653 14 6 7.5529 -1.9127 1.4414 15 6 7.6424 -3.3343 0.8489 16 1 8.5553 -3.4376 0.2623 17 7 7.6213 -4.3286 1.9247 18 6 8.7723 -4.7075 2.5147 19 8 9.8254 -4.2251 2.1554 20 6 8.7507 -5.7307 3.6209 21 6 10.1778 -5.9803 4.1127 22 6 10.1559 -7.0196 5.2353 23 6 11.5829 -7.2688 5.7275 24 6 12.4057 -7.9141 4.6082 25 6 13.8080 -8.2314 5.1342 26 8 13.7055 -9.0888 6.2729 27 6 12.9869 -8.5194 7.3690 28 6 11.5517 -8.2135 6.9329 29 6 6.4111 -3.5115 -0.0568 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3621 0.0055 32 1 3.8450 -3.0407 0.9008 33 1 3.8524 -3.0443 -0.8791 34 1 5.8982 -0.4811 1.3509 35 1 5.5013 -2.0148 2.1940 36 1 7.8945 -1.9087 2.4764 37 1 8.1363 -1.2127 0.8433 38 1 6.7790 -4.7142 2.2123 39 1 8.1411 -5.3614 4.4456 40 1 8.3279 -6.6627 3.2456 41 1 10.7869 -6.3499 3.2878 42 1 10.6010 -5.0486 4.4878 43 1 9.5467 -6.6505 6.0604 44 1 9.7329 -7.9513 4.8597 45 1 12.0391 -6.3223 6.0179 46 1 11.9211 -8.8351 4.2844 47 1 12.4797 -7.2250 3.7668 48 1 14.3073 -7.3056 5.4201 49 1 14.3845 -8.7298 4.3547 50 1 13.4754 -7.5973 7.6842 51 1 12.9718 -9.2249 8.1998 52 1 11.0147 -7.7387 7.7540 53 1 11.0498 -9.1406 6.6560 54 1 5.7978 -4.3371 0.3041 55 1 6.7264 -3.7006 -1.0829 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571536667.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:06 Heat of formation + Delta-G solvation = -134.599397 kcal Electronic energy + Delta-G solvation = -28895.825243 eV Core-core repulsion = 24930.170889 eV Total energy + Delta-G solvation = -3965.654353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.08747 -40.37062 -39.26716 -36.87919 -36.50530 -34.65969 -33.66091 -33.12908 -31.99216 -30.42064 -29.64896 -28.42403 -26.17942 -25.00230 -24.39287 -23.68233 -22.47868 -21.52850 -21.18191 -20.94095 -20.71252 -19.52241 -17.99425 -17.42248 -17.07283 -16.96067 -16.73256 -16.66279 -16.30178 -15.86022 -15.80542 -15.53675 -14.97814 -14.96221 -14.93506 -14.57615 -14.49466 -14.23658 -13.84438 -13.67871 -13.54381 -13.29482 -12.89446 -12.84967 -12.73213 -12.58936 -12.54021 -12.33736 -12.21121 -12.14379 -11.98937 -11.84874 -11.82106 -11.68689 -11.60751 -11.60096 -11.48437 -11.16988 -11.14394 -10.94749 -10.78426 -10.39465 -10.00421 -9.27413 -8.02638 -5.35159 1.37442 1.40465 1.47868 1.71166 2.29371 2.48284 2.98488 3.28987 3.49704 3.56749 3.67407 3.77140 3.83227 3.86827 3.96525 3.97740 4.10138 4.17994 4.24371 4.32774 4.40842 4.48965 4.50519 4.52163 4.54495 4.60583 4.65758 4.67612 4.72285 4.73946 4.77719 4.79294 4.85524 4.92092 4.95772 5.01170 5.03297 5.09037 5.10724 5.14534 5.16344 5.20373 5.22080 5.30907 5.34512 5.45744 5.50642 5.53666 5.67404 5.76587 6.21808 6.27756 6.63516 7.09083 7.33447 7.86612 8.04981 9.18968 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028978 B = 0.001492 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.017748 B =18763.744285 C =19020.008178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.953 3.047 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.251 1.251 7 C -0.234 4.234 8 H 0.057 0.943 9 N -0.758 5.758 10 C 0.162 3.838 11 C -0.095 4.095 12 H 0.075 0.925 13 C -0.112 4.112 14 C -0.125 4.125 15 C 0.146 3.854 16 H 0.079 0.921 17 N -0.715 5.715 18 C 0.507 3.493 19 O -0.588 6.588 20 C -0.136 4.136 21 C -0.100 4.100 22 C -0.106 4.106 23 C -0.091 4.091 24 C -0.150 4.150 25 C 0.055 3.945 26 O -0.408 6.408 27 C 0.053 3.947 28 C -0.147 4.147 29 C -0.110 4.110 30 H 0.257 0.743 31 H 0.365 0.635 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.413 0.587 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.052 0.948 49 H 0.098 0.902 50 H 0.053 0.947 51 H 0.102 0.898 52 H 0.086 0.914 53 H 0.069 0.931 54 H 0.086 0.914 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.951 -17.848 13.030 35.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.781 3.219 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.176 1.176 7 C -0.365 4.365 8 H 0.075 0.925 9 N -0.404 5.404 10 C 0.036 3.964 11 C -0.114 4.114 12 H 0.094 0.906 13 C -0.150 4.150 14 C -0.163 4.163 15 C 0.041 3.959 16 H 0.098 0.902 17 N -0.367 5.367 18 C 0.295 3.705 19 O -0.469 6.469 20 C -0.176 4.176 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.109 4.109 24 C -0.188 4.188 25 C -0.021 4.021 26 O -0.327 6.327 27 C -0.023 4.023 28 C -0.185 4.185 29 C -0.149 4.149 30 H 0.066 0.934 31 H 0.198 0.802 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.250 0.750 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.070 0.930 49 H 0.116 0.884 50 H 0.071 0.929 51 H 0.120 0.880 52 H 0.104 0.896 53 H 0.087 0.913 54 H 0.104 0.896 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 28.574 -17.814 12.773 36.013 hybrid contribution -0.674 1.459 -0.122 1.612 sum 27.900 -16.354 12.651 34.726 Atomic orbital electron populations 1.69881 1.07129 1.26630 1.59859 1.25491 0.96085 1.01192 1.02753 0.85433 0.78712 0.79722 0.78080 1.20531 1.22304 1.17573 1.19072 0.82900 0.93456 1.41088 0.92497 1.42733 1.02368 1.04378 1.90883 1.20858 0.90210 0.87172 0.98147 1.22123 0.93403 0.97629 0.98265 0.90622 1.22496 0.95307 1.00104 0.97053 1.22723 0.96086 0.96521 1.00992 1.21461 0.98911 0.87584 0.87986 0.90241 1.46235 1.09945 1.43127 1.37418 1.21375 0.83061 0.82633 0.83398 1.90675 1.32261 1.58211 1.65707 1.21753 1.00340 0.98695 0.96791 1.21305 0.94959 0.99114 0.98417 1.21577 0.95927 0.98953 0.97868 1.21209 0.96297 0.98375 0.95027 1.22265 0.96242 1.01446 0.98816 1.22695 0.96699 0.94538 0.88205 1.87897 1.75779 1.43713 1.25312 1.22742 0.91407 0.99172 0.89013 1.22222 0.97443 1.00233 0.98590 1.22345 0.94814 0.97249 1.00474 0.93392 0.80181 0.95421 0.95839 0.92750 0.91609 0.92019 0.90838 0.75027 0.87001 0.86693 0.92361 0.92967 0.90708 0.91043 0.91438 0.91325 0.90652 0.92962 0.88384 0.92870 0.87990 0.89572 0.91253 0.89564 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.03 13.97 21.65 0.30 -62.73 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 3 Si 0.95 45.33 27.74 68.60 1.90 47.23 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.25 -10.73 6.51 99.48 0.65 -10.08 16 7 C -0.23 -13.29 10.47 84.04 0.88 -12.41 16 8 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 9 N -0.76 -34.64 5.27 -343.44 -1.81 -36.45 16 10 C 0.16 5.73 5.54 86.38 0.48 6.21 16 11 C -0.10 -2.51 2.90 -9.72 -0.03 -2.54 16 12 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 13 C -0.11 -2.89 6.11 31.93 0.20 -2.69 16 14 C -0.12 -2.78 6.54 31.72 0.21 -2.57 16 15 C 0.15 2.93 3.25 45.72 0.15 3.08 16 16 H 0.08 1.80 7.57 -2.39 -0.02 1.78 16 17 N -0.72 -12.05 5.03 -439.08 -2.21 -14.26 16 18 C 0.51 9.72 7.83 87.66 0.69 10.41 16 19 O -0.59 -16.42 15.64 -3.01 -0.05 -16.47 16 20 C -0.14 -1.54 5.70 29.85 0.17 -1.37 16 21 C -0.10 -1.30 4.27 30.60 0.13 -1.17 16 22 C -0.11 -0.96 4.69 30.59 0.14 -0.82 16 23 C -0.09 -0.93 2.27 -10.67 -0.02 -0.96 16 24 C -0.15 -1.74 5.10 30.69 0.16 -1.58 16 25 C 0.06 0.69 6.84 72.01 0.49 1.18 16 26 O -0.41 -6.45 10.77 -148.98 -1.60 -8.06 16 27 C 0.05 0.57 6.84 72.01 0.49 1.06 16 28 C -0.15 -1.34 5.42 30.68 0.17 -1.18 16 29 C -0.11 -2.17 6.14 31.32 0.19 -1.98 16 30 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 31 H 0.37 16.01 5.44 -92.71 -0.50 15.50 16 32 H 0.03 0.98 8.06 -2.39 -0.02 0.96 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.07 1.75 8.00 -2.39 -0.02 1.73 16 36 H 0.06 1.43 8.04 -2.39 -0.02 1.41 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.41 5.03 8.32 -92.71 -0.77 4.26 16 39 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.11 0.82 8.14 -2.38 -0.02 0.81 16 41 H 0.06 0.91 6.62 -2.39 -0.02 0.90 16 42 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 43 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.91 6.75 -2.39 -0.02 0.89 16 48 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 49 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 50 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 51 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 53 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 54 H 0.09 1.52 7.31 -2.39 -0.02 1.50 16 55 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -74.07 423.55 1.01 -73.06 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: -0.48 Total: 28.27 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 4.96 Total: -10.60 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -3.72 Total: -113.44 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -1.65 Total: -24.52 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.23 kcal Total: -74.07 1.01 -73.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571536667.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.536 kcal (2) G-P(sol) polarization free energy of solvation -74.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds