Wall clock time and date at job start Tue Mar 31 2020 21:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48499 * 109.47295 * 269.99905 * 3 2 1 5 5 H 1.48501 * 109.47103 * 30.00400 * 3 2 1 6 6 H 1.48506 * 109.47044 * 150.00094 * 3 2 1 7 7 C 1.37879 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00389 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99690 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46756 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46751 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47034 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47369 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99498 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00367 * 179.72051 * 13 12 11 16 16 C 1.46928 * 120.62808 * 354.28562 * 15 13 12 17 17 C 1.53195 * 108.77257 * 233.58004 * 16 15 13 18 18 C 1.53042 * 109.31393 * 305.36350 * 17 16 15 19 19 C 1.53043 * 109.53530 * 61.36776 * 18 17 16 20 20 C 1.46923 * 120.63225 * 173.99935 * 15 13 12 21 21 H 1.09007 * 109.58632 * 246.20317 * 20 15 13 22 22 C 1.52995 * 109.58803 * 6.63094 * 20 15 13 23 23 H 1.09007 * 109.48104 * 50.71091 * 22 20 15 24 24 C 1.53092 * 109.48321 * 170.74541 * 22 20 15 25 25 C 1.53181 * 109.16436 * 177.59286 * 24 22 20 26 26 H 1.09000 * 109.54419 * 183.15803 * 25 24 22 27 27 N 1.46895 * 109.54472 * 62.88535 * 25 24 22 28 28 C 1.53187 * 109.03515 * 303.01876 * 25 24 22 29 29 C 1.53092 * 109.16016 * 56.97851 * 28 25 24 30 30 O 1.42895 * 109.42097 * 302.39275 * 29 28 25 31 31 H 0.97004 * 120.00269 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47034 * 60.00445 * 9 7 2 33 33 H 1.09000 * 109.47036 * 299.99850 * 9 7 2 34 34 H 1.08993 * 109.47140 * 59.99956 * 10 9 7 35 35 H 1.09000 * 109.47088 * 299.99649 * 10 9 7 36 36 H 1.09006 * 109.47177 * 59.99881 * 11 10 9 37 37 H 1.09000 * 109.47062 * 299.99694 * 11 10 9 38 38 H 1.08998 * 109.47242 * 59.99548 * 12 11 10 39 39 H 1.09000 * 109.46956 * 299.99771 * 12 11 10 40 40 H 1.08998 * 109.58927 * 353.36675 * 16 15 13 41 41 H 1.09004 * 109.58832 * 113.65147 * 16 15 13 42 42 H 1.09000 * 109.49863 * 65.31952 * 17 16 15 43 43 H 1.09002 * 109.49316 * 185.41150 * 17 16 15 44 44 H 1.08994 * 109.45595 * 181.38745 * 18 17 16 45 45 H 1.08998 * 109.45977 * 301.34911 * 18 17 16 46 46 H 1.08998 * 109.49735 * 58.58605 * 19 18 17 47 47 H 1.08999 * 109.49596 * 178.64882 * 19 18 17 48 48 H 1.08997 * 109.52202 * 297.49623 * 24 22 20 49 49 H 1.09002 * 109.51946 * 57.69015 * 24 22 20 50 50 H 1.00895 * 111.00153 * 180.44339 * 27 25 24 51 51 H 1.00902 * 111.00309 * 304.40232 * 27 25 24 52 52 H 1.09003 * 109.51998 * 297.07832 * 28 25 24 53 53 H 1.08997 * 109.52043 * 176.88454 * 28 25 24 54 54 H 1.09003 * 109.47840 * 182.40302 * 29 28 25 55 55 H 1.09004 * 109.48148 * 62.37872 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4744 -6.1500 -0.0005 13 6 1.7209 -7.4552 -0.0005 14 8 0.5081 -7.4551 0.0004 15 7 2.3947 -8.6223 -0.0067 16 6 3.8579 -8.6413 -0.1394 17 6 4.2354 -9.5628 -1.3036 18 6 3.6064 -10.9404 -1.0832 19 6 2.0822 -10.8072 -1.0474 20 6 1.6808 -9.8996 0.1253 21 1 1.9526 -10.3744 1.0681 22 6 0.1718 -9.6498 0.0898 23 1 -0.0749 -9.0365 -0.7770 24 6 -0.5653 -10.9882 -0.0052 25 6 -2.0756 -10.7335 0.0204 26 1 -2.6061 -11.6856 0.0096 27 7 -2.4603 -9.9411 -1.1551 28 6 -2.4308 -9.9635 1.2961 29 6 -1.6217 -8.6647 1.3408 30 8 -0.2272 -8.9713 1.2826 31 1 -0.4851 0.8401 0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6246 -2.5571 0.8897 34 1 2.8719 -3.6044 0.8894 35 1 2.8719 -3.6044 -0.8905 36 1 0.8532 -5.0451 -0.8897 37 1 0.8539 -5.0446 0.8904 38 1 3.1018 -6.0922 0.8889 39 1 3.1004 -6.0924 -0.8910 40 1 4.2198 -7.6328 -0.3395 41 1 4.3037 -9.0132 0.7831 42 1 3.8659 -9.1392 -2.2375 43 1 5.3199 -9.6615 -1.3523 44 1 3.8938 -11.6052 -1.8977 45 1 3.9572 -11.3527 -0.1371 46 1 1.7329 -10.3720 -1.9836 47 1 1.6340 -11.7919 -0.9144 48 1 -0.2958 -11.4872 -0.9360 49 1 -0.2877 -11.6177 0.8403 50 1 -3.4518 -9.7541 -1.1564 51 1 -1.9305 -9.0837 -1.2024 52 1 -2.1908 -10.5723 2.1678 53 1 -3.4954 -9.7296 1.2958 54 1 -1.8386 -8.1329 2.2673 55 1 -1.8919 -8.0385 0.4905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051597.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:50 Heat of formation + Delta-G solvation = -115.609969 kcal Electronic energy + Delta-G solvation = -31583.543004 eV Core-core repulsion = 27618.712094 eV Total energy + Delta-G solvation = -3964.830910 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.86472 -40.04153 -38.39445 -36.64198 -35.87043 -34.73592 -34.01114 -33.60732 -31.34634 -30.74297 -30.05910 -27.77369 -26.35746 -25.15229 -24.98394 -24.08194 -22.61766 -21.83682 -21.46739 -20.58820 -19.66205 -18.42695 -18.00696 -17.31977 -17.11989 -16.75951 -16.68020 -16.50395 -16.22450 -15.91955 -15.65506 -15.46679 -15.02600 -14.85048 -14.67708 -14.58588 -14.37753 -14.16392 -13.79160 -13.54943 -13.47372 -13.33199 -13.20693 -13.08904 -12.91011 -12.80516 -12.51865 -12.32654 -12.20840 -12.16055 -12.11179 -11.89437 -11.71947 -11.64082 -11.47223 -11.37962 -11.31406 -11.11675 -11.06020 -10.55721 -10.31968 -9.91701 -9.64502 -9.39761 -8.19340 -6.31549 1.39502 1.41914 1.52980 1.82554 2.07990 2.41359 2.89660 3.13266 3.52049 3.57921 3.82597 3.85578 3.90176 4.02478 4.04848 4.05276 4.07268 4.13598 4.15842 4.19568 4.27041 4.33364 4.47543 4.54607 4.62942 4.67632 4.68200 4.70167 4.75559 4.84303 4.87927 4.88973 4.92744 4.97253 5.01682 5.06940 5.09457 5.10947 5.18141 5.20194 5.25346 5.28809 5.32545 5.37578 5.49175 5.56147 5.76019 5.77504 5.87122 6.13348 6.24951 6.43386 6.49758 6.54970 6.86603 7.38012 7.40737 8.92915 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.002659 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.909771 B =10527.783576 C =12284.901251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.022 3.978 10 C -0.095 4.095 11 C -0.087 4.087 12 C -0.127 4.127 13 C 0.505 3.495 14 O -0.542 6.542 15 N -0.612 5.612 16 C 0.099 3.901 17 C -0.133 4.133 18 C -0.116 4.116 19 C -0.121 4.121 20 C 0.153 3.847 21 H 0.075 0.925 22 C 0.102 3.898 23 H 0.061 0.939 24 C -0.145 4.145 25 C 0.092 3.908 26 H 0.095 0.905 27 N -0.849 5.849 28 C -0.183 4.183 29 C 0.073 3.927 30 O -0.378 6.378 31 H 0.263 0.737 32 H -0.016 1.016 33 H -0.017 1.017 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.079 0.921 50 H 0.345 0.655 51 H 0.335 0.665 52 H 0.077 0.923 53 H 0.078 0.922 54 H 0.076 0.924 55 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 -29.928 -0.728 30.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.015 4.015 10 C -0.133 4.133 11 C -0.125 4.125 12 C -0.167 4.167 13 C 0.294 3.706 14 O -0.420 6.420 15 N -0.347 5.347 16 C -0.022 4.022 17 C -0.171 4.171 18 C -0.153 4.153 19 C -0.159 4.159 20 C 0.050 3.950 21 H 0.093 0.907 22 C 0.044 3.956 23 H 0.079 0.921 24 C -0.183 4.183 25 C -0.020 4.020 26 H 0.113 0.887 27 N -0.379 5.379 28 C -0.223 4.223 29 C -0.005 4.005 30 O -0.297 6.297 31 H 0.072 0.928 32 H 0.003 0.997 33 H 0.001 0.999 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.109 0.891 48 H 0.107 0.893 49 H 0.097 0.903 50 H 0.159 0.841 51 H 0.149 0.851 52 H 0.095 0.905 53 H 0.096 0.904 54 H 0.094 0.906 55 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.750 -30.400 -1.014 30.956 hybrid contribution -0.851 2.016 0.686 2.293 sum 4.899 -28.385 -0.327 28.807 Atomic orbital electron populations 1.70130 1.08056 1.27746 1.51865 1.26087 0.95787 1.03707 0.94748 0.85390 0.78681 0.78060 0.78570 1.19627 1.20882 1.18354 1.21754 0.93712 0.92262 1.50290 0.91677 1.19025 0.94590 0.93723 0.94191 1.21444 0.97828 0.93007 1.01005 1.21165 0.97279 0.93377 1.00725 1.21668 0.98984 0.90677 1.05324 1.20944 0.88031 0.86012 0.75630 1.90661 1.15180 1.86887 1.49257 1.48135 1.08303 1.04958 1.73279 1.22004 0.78127 1.02365 0.99748 1.21927 1.02127 0.95386 0.97650 1.21518 0.93444 0.97153 1.03197 1.22020 0.97782 0.99458 0.96670 1.21366 0.89860 0.84311 0.99430 0.90672 1.22084 0.92960 0.91087 0.89422 0.92108 1.22394 0.94581 0.97865 1.03488 1.21485 0.96101 0.97185 0.87212 0.88736 1.59041 1.10682 1.25909 1.42309 1.22968 1.00543 0.98043 1.00760 1.22251 0.81908 0.95596 1.00714 1.87869 1.23825 1.77725 1.40330 0.92844 0.99714 0.99875 0.92500 0.92234 0.93867 0.94189 0.87751 0.87331 0.88697 0.90189 0.92376 0.88508 0.90160 0.90784 0.92489 0.89057 0.89338 0.90261 0.84147 0.85075 0.90457 0.90375 0.90618 0.95096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.50 13.29 21.45 0.28 -59.22 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 3 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -4.02 5.15 30.60 0.16 -3.86 16 11 C -0.09 -3.27 4.50 30.59 0.14 -3.13 16 12 C -0.13 -3.42 4.12 29.85 0.12 -3.30 16 13 C 0.50 14.35 7.41 87.66 0.65 15.00 16 14 O -0.54 -18.85 9.42 21.04 0.20 -18.65 16 15 N -0.61 -12.95 2.97 -794.21 -2.36 -15.30 16 16 C 0.10 1.38 6.32 86.36 0.55 1.92 16 17 C -0.13 -1.41 6.08 30.67 0.19 -1.22 16 18 C -0.12 -1.13 5.88 30.62 0.18 -0.95 16 19 C -0.12 -1.66 4.59 30.82 0.14 -1.52 16 20 C 0.15 2.99 2.81 45.12 0.13 3.11 16 21 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 22 C 0.10 2.41 1.19 30.62 0.04 2.44 16 23 H 0.06 1.78 4.88 -2.38 -0.01 1.77 16 24 C -0.14 -2.59 4.45 30.69 0.14 -2.46 16 25 C 0.09 1.65 3.73 45.04 0.17 1.82 16 26 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 27 N -0.85 -17.02 9.18 -168.18 -1.54 -18.57 16 28 C -0.18 -3.53 5.80 30.69 0.18 -3.36 16 29 C 0.07 1.93 6.08 72.01 0.44 2.37 16 30 O -0.38 -11.03 8.07 -124.90 -1.01 -12.04 16 31 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 32 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 33 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.04 1.74 8.10 -2.38 -0.02 1.72 16 37 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 38 H 0.10 2.46 8.13 -2.39 -0.02 2.44 16 39 H 0.11 2.42 7.44 -2.39 -0.02 2.41 16 40 H 0.09 1.21 5.96 -2.39 -0.01 1.20 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.09 0.99 6.76 -2.39 -0.02 0.97 16 48 H 0.09 1.43 6.62 -2.39 -0.02 1.42 16 49 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.35 5.97 9.04 -89.70 -0.81 5.16 16 51 H 0.34 8.19 5.70 -89.69 -0.51 7.68 16 52 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 53 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 54 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 55 H 0.03 0.93 6.56 -2.38 -0.02 0.91 16 Total: -1.00 -73.97 405.06 1.20 -72.77 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -0.45 Total: 27.12 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 4.05 Total: -23.35 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -3.62 Total: -93.09 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.81 Total: -30.70 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -73.97 1.20 -72.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051597.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.841 kcal (2) G-P(sol) polarization free energy of solvation -73.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds