Wall clock time and date at job start Tue Mar 31 2020 22:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47424 * 2 1 4 4 C 1.52993 * 109.46951 * 239.99450 * 2 1 3 5 5 O 1.42912 * 109.46739 * 119.99651 * 2 1 3 6 6 C 1.42894 * 113.99785 * 59.99666 * 5 2 1 7 7 C 1.50703 * 109.46902 * 179.97438 * 6 5 2 8 8 O 1.21279 * 119.99601 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99898 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99966 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.86830 * 23.73549 * 10 9 7 12 12 C 1.52250 * 113.10382 * 251.62815 * 10 9 7 13 13 H 1.09008 * 113.66859 * 103.47768 * 12 10 9 14 14 C 1.51668 * 113.54200 * 334.34647 * 12 10 9 15 15 C 1.53029 * 110.03890 * 213.36240 * 14 12 10 16 16 C 1.52938 * 108.92764 * 63.74694 * 15 14 12 17 17 N 1.45892 * 109.89089 * 302.65233 * 16 15 14 18 18 C 1.36941 * 118.48232 * 219.36433 * 17 16 15 19 19 H 1.08004 * 119.99969 * 153.34787 * 18 17 16 20 20 C 1.38811 * 120.00153 * 333.34466 * 18 17 16 21 21 N 1.31616 * 120.00042 * 344.13447 * 20 18 17 22 22 Si 1.86793 * 119.99997 * 164.13353 * 20 18 17 23 23 H 1.48502 * 109.47404 * 94.95950 * 22 20 18 24 24 H 1.48501 * 109.47200 * 214.96177 * 22 20 18 25 25 H 1.48509 * 109.47208 * 334.96072 * 22 20 18 26 26 C 1.45094 * 123.03265 * 39.33865 * 17 16 15 27 27 H 1.08998 * 112.25812 * 204.21181 * 26 17 16 28 28 C 1.53385 * 114.62322 * 73.76776 * 26 17 16 29 29 C 1.53002 * 113.68747 * 331.11182 * 28 26 17 30 30 C 1.52998 * 113.68913 * 102.15016 * 28 26 17 31 31 H 1.08998 * 109.46790 * 300.00833 * 1 2 3 32 32 H 1.09004 * 109.46414 * 60.00210 * 1 2 3 33 33 H 1.08996 * 109.47124 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47270 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.46740 * 300.00180 * 3 2 1 36 36 H 1.09006 * 109.47320 * 59.99106 * 3 2 1 37 37 H 1.08996 * 109.47227 * 299.99961 * 4 2 1 38 38 H 1.08997 * 109.47195 * 60.00465 * 4 2 1 39 39 H 1.09010 * 109.46986 * 180.02562 * 4 2 1 40 40 H 1.09000 * 109.46941 * 60.00284 * 6 5 2 41 41 H 1.08998 * 109.47627 * 299.99935 * 6 5 2 42 42 H 0.96997 * 120.00654 * 0.02562 * 9 7 6 43 43 H 1.08999 * 109.89975 * 92.73153 * 14 12 10 44 44 H 1.09003 * 108.43278 * 333.07800 * 14 12 10 45 45 H 1.09002 * 109.55823 * 303.90970 * 15 14 12 46 46 H 1.09000 * 109.55996 * 183.58193 * 15 14 12 47 47 H 1.08992 * 109.40686 * 62.78656 * 16 15 14 48 48 H 1.09007 * 109.39629 * 182.52950 * 16 15 14 49 49 H 0.96998 * 120.00546 * 179.97438 * 21 20 18 50 50 H 1.09008 * 109.47094 * 91.84024 * 29 28 26 51 51 H 1.09003 * 109.47104 * 211.83967 * 29 28 26 52 52 H 1.08995 * 109.47448 * 331.83770 * 29 28 26 53 53 H 1.08998 * 109.46784 * 59.99819 * 30 28 26 54 54 H 1.08997 * 109.47446 * 180.02562 * 30 28 26 55 55 H 1.09005 * 109.46855 * 299.99852 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6736 1.1669 6 6 1.5846 -2.0354 1.2647 7 6 2.1419 -2.6446 2.5254 8 8 2.8318 -1.9779 3.2673 9 7 1.8726 -3.9298 2.8289 10 6 2.4139 -4.5218 4.0548 11 1 2.6486 -3.7783 4.8165 12 6 3.5236 -5.5305 3.7917 13 1 4.5225 -5.1457 3.9974 14 6 3.4428 -6.1763 2.4218 15 6 3.9448 -7.6202 2.4923 16 6 3.0162 -8.4243 3.4035 17 7 2.9609 -7.8075 4.7245 18 6 2.9389 -8.6220 5.8251 19 1 3.3207 -8.2637 6.7698 20 6 2.4259 -9.9081 5.7267 21 7 1.6859 -10.2440 4.6914 22 14 2.7858 -11.1620 7.0637 23 1 1.6715 -11.1729 8.0452 24 1 2.9223 -12.5095 6.4547 25 1 4.0500 -10.8005 7.7541 26 6 2.9285 -6.3710 4.9260 27 1 3.3045 -6.0832 5.9078 28 6 1.5885 -5.7077 4.5840 29 6 0.7993 -6.4408 3.4974 30 6 0.7392 -5.3694 5.8109 31 1 -0.3633 0.5140 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6767 -1.7490 -1.2490 38 1 1.6767 -0.2076 -2.1391 39 1 3.1301 -0.7217 -1.2489 40 1 1.9491 -2.5915 0.4010 41 1 0.4957 -2.0776 1.2909 42 1 1.3205 -4.4628 2.2358 43 1 4.0491 -5.6151 1.7107 44 1 2.4020 -6.1687 2.0980 45 1 4.9566 -7.6354 2.8974 46 1 3.9433 -8.0563 1.4934 47 1 2.0155 -8.4464 2.9721 48 1 3.3922 -9.4433 3.4952 49 1 1.3277 -11.1428 4.6224 50 1 0.1236 -7.1594 3.9613 51 1 0.2216 -5.7198 2.9189 52 1 1.4905 -6.9654 2.8377 53 1 1.2876 -4.6808 6.4536 54 1 -0.1928 -4.9039 5.4905 55 1 0.5177 -6.2831 6.3625 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656650693.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:53 Heat of formation + Delta-G solvation = -44.104045 kcal Electronic energy + Delta-G solvation = -31973.061647 eV Core-core repulsion = 28011.331467 eV Total energy + Delta-G solvation = -3961.730181 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.51042 -40.58494 -39.30920 -36.87432 -34.53493 -34.48690 -34.31236 -32.17227 -31.49134 -29.46221 -28.34502 -28.26156 -27.95196 -27.22389 -25.84874 -24.04539 -22.80661 -21.35941 -20.94918 -20.74871 -19.18309 -18.72026 -18.24665 -17.44409 -17.05362 -16.94183 -16.48529 -16.32153 -15.94981 -15.76501 -15.32232 -15.02251 -14.81341 -14.55812 -14.39758 -14.16262 -14.09759 -14.00429 -13.76845 -13.47040 -13.11016 -13.07376 -12.93707 -12.85744 -12.81185 -12.77681 -12.72421 -12.62678 -12.49847 -12.45680 -12.18047 -12.09618 -11.96974 -11.58722 -11.55476 -11.38749 -11.18974 -10.95035 -10.81703 -10.61566 -10.54604 -10.30504 -9.83577 -8.52738 -7.79517 -5.23737 1.45420 1.48673 1.56639 1.61754 1.87942 2.54221 3.03872 3.32575 3.54808 3.67823 3.72932 3.82813 3.91627 3.93451 3.99780 4.04370 4.12172 4.19852 4.29357 4.30870 4.44496 4.51520 4.62971 4.69141 4.69463 4.70690 4.72173 4.82974 4.84442 4.84522 4.88694 4.96597 4.97354 4.97593 5.04660 5.12048 5.13825 5.18474 5.19435 5.30353 5.35581 5.36614 5.39971 5.41152 5.57236 5.60043 5.60764 5.73562 5.75498 6.00274 6.23190 6.45539 6.62907 7.26300 7.28356 8.03765 8.38685 9.23053 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.002602 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.799306 B =10760.294905 C =11015.224354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.094 3.906 3 C -0.138 4.138 4 C -0.178 4.178 5 O -0.385 6.385 6 C 0.042 3.958 7 C 0.510 3.490 8 O -0.576 6.576 9 N -0.697 5.697 10 C 0.149 3.851 11 H 0.099 0.901 12 C -0.126 4.126 13 H 0.061 0.939 14 C -0.095 4.095 15 C -0.135 4.135 16 C 0.188 3.812 17 N -0.579 5.579 18 C -0.265 4.265 19 H 0.057 0.943 20 C -0.039 4.039 21 N -0.923 5.923 22 Si 0.954 3.046 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.277 1.277 26 C 0.169 3.831 27 H 0.062 0.938 28 C -0.107 4.107 29 C -0.130 4.130 30 C -0.122 4.122 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.413 0.587 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.076 0.924 47 H 0.026 0.974 48 H 0.029 0.971 49 H 0.247 0.753 50 H 0.031 0.969 51 H 0.066 0.934 52 H 0.087 0.913 53 H 0.053 0.947 54 H 0.058 0.942 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 17.599 -14.602 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.056 3.944 3 C -0.195 4.195 4 C -0.235 4.235 5 O -0.305 6.305 6 C -0.037 4.037 7 C 0.297 3.703 8 O -0.455 6.455 9 N -0.351 5.351 10 C 0.043 3.957 11 H 0.117 0.883 12 C -0.148 4.148 13 H 0.079 0.921 14 C -0.132 4.132 15 C -0.174 4.174 16 C 0.063 3.937 17 N -0.297 5.297 18 C -0.396 4.396 19 H 0.074 0.926 20 C -0.235 4.235 21 N -0.569 5.569 22 Si 0.783 3.217 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.202 1.202 26 C 0.059 3.941 27 H 0.080 0.920 28 C -0.111 4.111 29 C -0.186 4.186 30 C -0.180 4.180 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.251 0.749 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.043 0.957 48 H 0.048 0.952 49 H 0.057 0.943 50 H 0.050 0.950 51 H 0.085 0.915 52 H 0.105 0.895 53 H 0.072 0.928 54 H 0.077 0.923 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.370 18.009 -14.008 23.063 hybrid contribution -0.151 -1.507 0.939 1.782 sum -3.521 16.502 -13.070 21.343 Atomic orbital electron populations 1.22444 0.94321 1.03290 1.03464 1.21858 0.94315 0.93473 0.84773 1.21792 1.01525 0.93049 1.03146 1.22443 1.01814 1.01540 0.97742 1.88077 1.74930 1.22711 1.44766 1.22306 1.00945 0.85021 0.95410 1.20923 0.79981 0.81810 0.87559 1.90688 1.39900 1.62205 1.52690 1.45812 1.53097 1.11381 1.24779 1.22035 0.94456 0.92294 0.86905 0.88330 1.22574 0.98200 0.96454 0.97524 0.92092 1.21187 1.02584 0.94790 0.94620 1.21941 0.99193 0.96401 0.99840 1.20420 0.95773 0.93945 0.83573 1.43291 1.84028 0.99883 1.02529 1.19433 1.33330 0.95548 0.91302 0.92571 1.25536 0.97893 1.00565 0.99481 1.70170 1.35790 1.18989 1.31956 0.85478 0.77772 0.79104 0.79352 1.21678 1.21924 1.20214 1.21220 0.93947 0.83140 0.95754 0.91976 1.22932 0.97143 0.94687 0.96326 1.21914 0.99806 0.98937 0.97982 1.21569 0.99404 1.00110 0.96886 0.92581 0.89478 0.91312 0.92741 0.88642 0.92724 0.91294 0.89481 0.92592 0.87722 0.87752 0.74852 0.91454 0.89677 0.93735 0.90588 0.95650 0.95231 0.94327 0.94984 0.91514 0.89475 0.92759 0.92330 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 8.25 71.98 0.59 -1.45 16 2 C 0.09 1.45 1.14 -10.80 -0.01 1.44 16 3 C -0.14 -1.97 8.84 71.98 0.64 -1.33 16 4 C -0.18 -2.07 8.25 71.98 0.59 -1.47 16 5 O -0.39 -9.07 9.52 -129.94 -1.24 -10.31 16 6 C 0.04 0.80 5.62 71.24 0.40 1.20 16 7 C 0.51 13.87 7.91 87.66 0.69 14.56 16 8 O -0.58 -21.58 16.10 16.02 0.26 -21.32 16 9 N -0.70 -17.14 4.35 -442.34 -1.92 -19.06 16 10 C 0.15 4.56 3.65 45.03 0.16 4.73 16 11 H 0.10 3.34 7.30 -2.39 -0.02 3.32 16 12 C -0.13 -4.22 3.99 -11.46 -0.05 -4.27 16 13 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 14 C -0.09 -2.82 4.68 30.17 0.14 -2.67 16 15 C -0.14 -4.72 6.06 30.58 0.19 -4.53 16 16 C 0.19 8.42 4.00 86.47 0.35 8.77 16 17 N -0.58 -27.28 2.67 -681.85 -1.82 -29.10 16 18 C -0.27 -14.21 9.46 84.03 0.80 -13.42 16 19 H 0.06 3.03 7.85 -2.91 -0.02 3.01 16 20 C -0.04 -2.10 4.86 84.86 0.41 -1.68 16 21 N -0.92 -51.87 11.05 21.65 0.24 -51.63 16 22 Si 0.95 44.59 29.58 68.60 2.03 46.62 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 C 0.17 6.74 3.60 45.45 0.16 6.90 16 27 H 0.06 2.61 7.97 -2.39 -0.02 2.59 16 28 C -0.11 -3.62 1.35 -51.81 -0.07 -3.69 16 29 C -0.13 -4.28 6.85 71.98 0.49 -3.78 16 30 C -0.12 -4.08 9.16 71.98 0.66 -3.42 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.67 6.54 -2.39 -0.02 0.65 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.07 0.68 6.54 -2.39 -0.02 0.66 16 38 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.11 1.44 6.42 -2.39 -0.02 1.43 16 41 H 0.10 1.43 6.42 -2.39 -0.02 1.41 16 42 H 0.41 8.00 5.66 -92.71 -0.52 7.47 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.09 2.32 3.65 -2.39 -0.01 2.31 16 45 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.03 1.21 5.66 -2.39 -0.01 1.19 16 48 H 0.03 1.53 6.55 -2.38 -0.02 1.52 16 49 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 50 H 0.03 1.26 8.08 -2.38 -0.02 1.24 16 51 H 0.07 1.65 6.53 -2.39 -0.02 1.64 16 52 H 0.09 3.00 1.98 -2.39 0.00 3.00 16 53 H 0.05 1.69 7.95 -2.39 -0.02 1.67 16 54 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 55 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -68.59 401.50 4.05 -64.54 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.36 Total: 24.38 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 6.15 Total: -4.12 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -3.50 Total: -99.78 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.98 Total: -31.63 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -68.59 4.05 -64.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656650693.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.432 kcal (2) G-P(sol) polarization free energy of solvation -68.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds